BLASTX nr result
ID: Lithospermum22_contig00008053
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00008053
(2220 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 577 e-162
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 568 e-159
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 564 e-158
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]... 563 e-158
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 563 e-158
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 577 bits (1488), Expect = e-162
Identities = 320/598 (53%), Positives = 397/598 (66%), Gaps = 37/598 (6%)
Frame = -2
Query: 1949 YSARKPSGSQVPLKKRLDTGDRGNAHTTHEDDDQHGYDKD---PISDNDSIGSDLYTGED 1779
YS+RKPSGSQVPLKKRLD +R + + ++ D + D SD +G DLY ED
Sbjct: 54 YSSRKPSGSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNED 113
Query: 1778 DRQNLARMSELQRESILADRAEKRSDRELHDKLR-----------RRRSPEHPQPXXXXX 1632
DR+ LA+MSEL+RE IL++RA+K+ D+ L +++R R+ +P P
Sbjct: 114 DRRKLAQMSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRT 173
Query: 1631 XXXXXXXXXXXXXALNEIRAKQKRQHDPDGYRK------GDSGNRGYSPVKRKSFSAID- 1473
ALNE++A++ +Q DP+ +RK SG+RG+SP+KRK F++
Sbjct: 174 SARSADRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASL 233
Query: 1472 ----------SSYHXXXXXXXXXXXXXXXXXXXXXEFPTFEEVKGITIRRSKLAKWFMEP 1323
S + PTF++++ ITIRRSKLAKWFMEP
Sbjct: 234 SSSSSESESRSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEP 293
Query: 1322 FFDELIVGCFVRVGIGRSRSGPIYRLCIVRNVDASDSDRLYKLDNKTTYKYLNVVWGNES 1143
+F+ELIVGCFVRVGIGRS+SGPIYRLC+VRNVDA+D DR YKL+NKTTYKYLNV+WGNES
Sbjct: 294 WFEELIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNES 353
Query: 1142 SAARWQMAMISDSSPLKEEYDQWIREVERSGGRMPSKQDVLEKEEAIQKINDYVYSAETV 963
SAARWQMAMISDS+P ++EY QW+REVERSGGRMP+KQD+LEK+EAI+K N +VYSA TV
Sbjct: 354 SAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATV 413
Query: 962 KQMLQEKKSATWRPLNVAAEKDRLRREMEVAKTRHDDEEVEKIQARIQELEAARESQEKD 783
KQMLQEKKSA+ RPLNVAAEKDRLRRE+EVA+++ DD EVE+I+ARIQELEA+R++Q KD
Sbjct: 414 KQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKD 473
Query: 782 SKAIRLAEMNRKNRVENFKNASELK---SNSLAGQAGYDPFSRRWTRSRNYYVGKXXXXX 612
+KAIRLAEMNRKNR ENF+NASELK ++ AG+AGYDPFSRRWTRSRNYYV K
Sbjct: 474 AKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGD 533
Query: 611 XXXXXXXXXXASVNATDNQASSSTG---EXXXXXXXXXXXXXXXXXXXVDTRAPIDQGTE 441
+V A N+ S+ G E VDT AP+DQGTE
Sbjct: 534 AAAATNNEASGTV-AVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTE 592
Query: 440 TYTLHNFELPISLAVXXXXXXXXXXXXXXXXRKQMIEATVGVQVPENDGRRHALTLTV 267
+ TLHNFELPISL RKQ IEAT+G +V END +RH LTLTV
Sbjct: 593 SNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTV 650
>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Cucumis
sativus]
Length = 660
Score = 568 bits (1465), Expect = e-159
Identities = 316/598 (52%), Positives = 391/598 (65%), Gaps = 37/598 (6%)
Frame = -2
Query: 1949 YSARKPSGSQVPLKKRLDTGDR---GNAHTTHEDDDQHGYDKDPISDNDSIGSDLYTGED 1779
Y++RKPSGSQVPLKKRLD +R G + ED+D + SD +G DLY +D
Sbjct: 54 YASRKPSGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDD 113
Query: 1778 DRQNLARMSELQRESILADRAEKRSDRELHDKLR-----------RRRSPEHPQPXXXXX 1632
DR+ LA MSELQRE IL+DRA K++D+ L++ LR R+ +P P
Sbjct: 114 DRRKLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSS 173
Query: 1631 XXXXXXXXXXXXXALNEIRAKQKRQHDPDGYRK------GDSGNRGYSPVKRKSFSAIDS 1470
LNE+RAK+ +Q DP+ +RK G++ +R +SP KRK F+A
Sbjct: 174 ARSADRAAAKDDA-LNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSL 232
Query: 1469 SYHXXXXXXXXXXXXXXXXXXXXXEF-------------PTFEEVKGITIRRSKLAKWFM 1329
S PTFE++K +TIRRSKLAKW M
Sbjct: 233 SSSSQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLM 292
Query: 1328 EPFFDELIVGCFVRVGIGRSRSGPIYRLCIVRNVDASDSDRLYKLDNKTTYKYLNVVWGN 1149
EPFF+ELIVGCFVRVGIGRSRSGPIYRLC+VRNVDA++ DR YKL+NK T+KYLNV+WGN
Sbjct: 293 EPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGN 352
Query: 1148 ESSAARWQMAMISDSSPLKEEYDQWIREVERSGGRMPSKQDVLEKEEAIQKINDYVYSAE 969
E+SAARWQMAM+SDS+PL++EY QW++EVER+GGRM SKQD+LEK+EAIQK+N++VYSA
Sbjct: 353 EASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAA 412
Query: 968 TVKQMLQEKKSATWRPLNVAAEKDRLRREMEVAKTRHDDEEVEKIQARIQELEAARESQE 789
TVKQMLQ+KKSA+ RPLN+AAEKDRLRREM+VA +++D+ EVE+I+ R+Q+LEA+R Q
Sbjct: 413 TVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQM 472
Query: 788 KDSKAIRLAEMNRKNRVENFKNASELK--SNSLAGQAGYDPFSRRWTRSRNYYVGKXXXX 615
KD+KAIRLAEMNRKNRVENFKNASEL+ + AG+AGYDPFSRRWTRSRNYYV
Sbjct: 473 KDAKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEA 532
Query: 614 XXXXXXXXXXXASVNATDNQASSS--TGEXXXXXXXXXXXXXXXXXXXVDTRAPIDQGTE 441
A +N + + T + VDT AP+D GTE
Sbjct: 533 NGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTE 592
Query: 440 TYTLHNFELPISLAVXXXXXXXXXXXXXXXXRKQMIEATVGVQVPENDGRRHALTLTV 267
+ +LHNFELPISLA+ RKQ IEATVG QVPENDGRRHALTLTV
Sbjct: 593 SNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTV 650
>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 564 bits (1454), Expect = e-158
Identities = 315/596 (52%), Positives = 398/596 (66%), Gaps = 35/596 (5%)
Frame = -2
Query: 1949 YSARKPSGSQVPLKKRLDTGDRGNAHTTHEDDDQHG---YDKDPISDNDSIGSDLYTGED 1779
Y++RKPSGSQVPLKKRLD +R + + E+ D G +D D SD +IG DLY ED
Sbjct: 54 YASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDS-SDESNIGDDLYKDED 112
Query: 1778 DRQNLARMSELQRESILADRAEKRSDRELHDKLR-----------RRRSPEHPQPXXXXX 1632
DR+ L+ M+ELQRE IL+DRA K+ D+ L K+ R++SP P
Sbjct: 113 DRRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSP--PMSSSRMR 170
Query: 1631 XXXXXXXXXXXXXALNEIRAKQKRQHDPDGYRK-----GDSGNRGYSPVKRKSFSA--ID 1473
ALNE+RAK+ +Q DP+ +R+ ++G R +SP KRK+F++ +
Sbjct: 171 ASARSADRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLS 230
Query: 1472 SSYHXXXXXXXXXXXXXXXXXXXXXEF-----------PTFEEVKGITIRRSKLAKWFME 1326
SS H + P+F+++K ITIRRSKLAKWFME
Sbjct: 231 SSSHSESESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFME 290
Query: 1325 PFFDELIVGCFVRVGIGRSRSGPIYRLCIVRNVDASDSDRLYKLDNKTTYKYLNVVWGNE 1146
PFF+ELIVGCFVRVGIGRS++GPIYRLC+V+NVDAS+ DR YKL+NKTTYKYLNVVWGNE
Sbjct: 291 PFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNE 350
Query: 1145 SSAARWQMAMISDSSPLKEEYDQWIREVERSGGRMPSKQDVLEKEEAIQKINDYVYSAET 966
SSAARWQMAM+SDS+P++EE+ QW++EV+ SGGRMPSKQDVLEK++AIQK +VYSA T
Sbjct: 351 SSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAAT 410
Query: 965 VKQMLQEKKSATWRPLNVAAEKDRLRREMEVAKTRHDDEEVEKIQARIQELEAARESQEK 786
VKQMLQEKKSA+ RPLNVAAEKDRLRRE+E+A+++HD+ EVE+I+ R+QELEA+R++++K
Sbjct: 411 VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQK 470
Query: 785 DSKAIRLAEMNRKNRVENFKNASELKSNSL---AGQAGYDPFSRRWTRSRNYYVGKXXXX 615
D+KA++LAEMNRKNR ENFKNASELK ++ AG+AGYDPFSRRWTRSRNYY K
Sbjct: 471 DAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK 530
Query: 614 XXXXXXXXXXXASVNATDNQASSSTGEXXXXXXXXXXXXXXXXXXXVDTRAPIDQGTETY 435
+ ++ + T E VDT AP+DQGTE+
Sbjct: 531 AAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESN 590
Query: 434 TLHNFELPISLAVXXXXXXXXXXXXXXXXRKQMIEATVGVQVPENDGRRHALTLTV 267
LHNFELPISLA+ RKQ IE+TVG +V ENDGRRHALTLTV
Sbjct: 591 MLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTV 646
>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
gi|222859693|gb|EEE97240.1| PAF1 complex component
[Populus trichocarpa]
Length = 664
Score = 563 bits (1451), Expect = e-158
Identities = 312/600 (52%), Positives = 391/600 (65%), Gaps = 39/600 (6%)
Frame = -2
Query: 1949 YSARKPSGSQVPLKKRLDTGDRGNAHTTHE--DDDQHGYDKD-PISDNDSIGSDLYTGED 1779
Y++RKPSGSQVPLKKRL+T +R + + E D D G D++ SD IG DLY ED
Sbjct: 55 YASRKPSGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDED 114
Query: 1778 DRQNLARMSELQRESILADRAEKRSDRELHDKLR-----------RRRSPEHPQPXXXXX 1632
DRQ LA+MSEL RE ILADRA+K+ D+ L +K+R R+ +P P
Sbjct: 115 DRQKLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRS 174
Query: 1631 XXXXXXXXXXXXXALNEIRAKQKRQHDPDGYRK------GDSGNRGYSPVKRKSFSAIDS 1470
ALNE+RAK+ +Q DP+ +RK G +G+RG++ VK+ +F++
Sbjct: 175 SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARL 234
Query: 1469 SYHXXXXXXXXXXXXXXXXXXXXXEF-------------PTFEEVKGITIRRSKLAKWFM 1329
S PT+E++K ITIRR+KLAKWFM
Sbjct: 235 SSSSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFM 294
Query: 1328 EPFFDELIVGCFVRVGIGRSRSGPIYRLCIVRNVDASDSDRLYKLDNKTTYKYLNVVWGN 1149
EP+F+ELI+GCFVRVGIGRS++GP+YRLC+VRNVDA++ D+ YKL+NK+TYKYLNV WG
Sbjct: 295 EPWFEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGA 354
Query: 1148 ESSAARWQMAMISDSSPLKEEYDQWIREVERSGGRMPSKQDVLEKEEAIQKINDYVYSAE 969
+SSAARWQMAM+SDS+P +EEY QW+RE ER GGR+PSKQD+LEK+EAI+K N +VYSA
Sbjct: 355 DSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAA 414
Query: 968 TVKQMLQEKKSATWRPLNVAAEKDRLRREMEVAKTRHDDEEVEKIQARIQELEAARESQE 789
TVKQMLQEKKSA+ RPLNVAAEKDRLRRE+E+A++RHD+ EVE+I+ARI ELEA+R+++
Sbjct: 415 TVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKV 474
Query: 788 KDSKAIRLAEMNRKNRVENFKNASELK---SNSLAGQAGYDPFSRRWTRSRNYYVGKXXX 618
KD+KA+RLAEMNRKNRVENF+NASELK + AG+AGYDPFSRRWTRSRNYYV
Sbjct: 475 KDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAG 534
Query: 617 XXXXXXXXXXXXASVNA---TDNQASSSTGEXXXXXXXXXXXXXXXXXXXVDTRAPIDQG 447
A +D+ + + E VDT AP+DQG
Sbjct: 535 GDDAVAASNSEANDTAALADSDHVVAGAISESGVAATAAALDAAADAGKLVDTSAPVDQG 594
Query: 446 TETYTLHNFELPISLAVXXXXXXXXXXXXXXXXRKQMIEATVGVQVPENDGRRHALTLTV 267
TE+ T+HNFEL ISL RKQ IEA VG QV ENDGRRHALTLTV
Sbjct: 595 TESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTV 654
>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 563 bits (1450), Expect = e-158
Identities = 316/596 (53%), Positives = 396/596 (66%), Gaps = 35/596 (5%)
Frame = -2
Query: 1949 YSARKPSGSQVPLKKRLDTGDRGNAHTTHEDDDQHGY---DKDPISDNDSIGSDLYTGED 1779
Y++RKPSGSQVPLKKRLD +R + + E+ D G D D SD +IG DLY ED
Sbjct: 54 YASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDS-SDESNIGDDLYKDED 112
Query: 1778 DRQNLARMSELQRESILADRAEKRSDRELHDKLR-----------RRRSPEHPQPXXXXX 1632
DR+ L+ M+ELQRE IL+DRA K+ D+ L K+ R++SP P
Sbjct: 113 DRRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSP--PMSSSRMR 170
Query: 1631 XXXXXXXXXXXXXALNEIRAKQKRQHDPDGYRK-----GDSGNRGYSPVKRKSFSA--ID 1473
ALNE+RAK+ +Q DP+ +R+ ++G+R +SP KRK F++ +
Sbjct: 171 ASARSADRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLS 230
Query: 1472 SSYHXXXXXXXXXXXXXXXXXXXXXEF-----------PTFEEVKGITIRRSKLAKWFME 1326
SS H + P+F++VK ITIRRSKLAKWFME
Sbjct: 231 SSSHSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFME 290
Query: 1325 PFFDELIVGCFVRVGIGRSRSGPIYRLCIVRNVDASDSDRLYKLDNKTTYKYLNVVWGNE 1146
PFF+ELIVGCFVRVGIGRS++GPIYRLC+V+NVDAS+ DR YKL+NKTTYKYLNVVWGNE
Sbjct: 291 PFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNE 350
Query: 1145 SSAARWQMAMISDSSPLKEEYDQWIREVERSGGRMPSKQDVLEKEEAIQKINDYVYSAET 966
SSAARWQMAM+SDS+PL+EE+ QW++EV+RSGGRMPSKQDVLEK++AIQK +VYSA T
Sbjct: 351 SSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAAT 410
Query: 965 VKQMLQEKKSATWRPLNVAAEKDRLRREMEVAKTRHDDEEVEKIQARIQELEAARESQEK 786
VKQMLQEKKSA+ RPLNVAAEKDRLRRE+E+A++++D+ EVE+I+ R+ ELEA+R++++K
Sbjct: 411 VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQK 470
Query: 785 DSKAIRLAEMNRKNRVENFKNASELK---SNSLAGQAGYDPFSRRWTRSRNYYVGKXXXX 615
D+KA++LAEMNRKNR ENFKNASE+K + AG+AGYDPFSRRWTRSRNYY K
Sbjct: 471 DAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK 530
Query: 614 XXXXXXXXXXXASVNATDNQASSSTGEXXXXXXXXXXXXXXXXXXXVDTRAPIDQGTETY 435
+ ++ + T E VDT AP+DQGTE+
Sbjct: 531 AAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESN 590
Query: 434 TLHNFELPISLAVXXXXXXXXXXXXXXXXRKQMIEATVGVQVPENDGRRHALTLTV 267
LHNFELPISLA+ RKQ IEATVG +V ENDGRRHALTLTV
Sbjct: 591 MLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTV 646