BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00007938
         (1088 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253...   336   7e-90
sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig ...   332   8e-89
pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regul...   326   5e-87
ref|NP_172893.1| ssDNA-binding transcriptional regulator [Arabid...   324   3e-86
ref|NP_001077872.1| ssDNA-binding transcriptional regulator [Ara...   322   8e-86

>ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253653 [Vitis vinifera]
           gi|296086421|emb|CBI32010.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score =  336 bits (861), Expect = 7e-90
 Identities = 165/213 (77%), Positives = 186/213 (87%), Gaps = 6/213 (2%)
 Frame = -1

Query: 869 CLQSHYFEQNTFI---PPQSSQTG---PPRVFVGYSIYKGKAALTVDPRAPEFTPLDSGA 708
           C QS YF+Q       PP  S  G    PRVFVG+SIYKGKAALTV+P+APEFTPLDSGA
Sbjct: 57  CRQSDYFQQQNITRRQPPNDSSFGGALQPRVFVGHSIYKGKAALTVEPKAPEFTPLDSGA 116

Query: 707 YKLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGSLISLGAKESCEFFHDPFKGKS 528
           +K+SKEGFVLLQFAPAAGVRQYDW RKQVFSLSVTE+GSLISLGA+ESCEFFHDPFKG+S
Sbjct: 117 FKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRS 176

Query: 527 DEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINVDESIYIPVTKAEFTVLTSAFNFIVPYL 348
           +EG+VRKVLKVEPLPDGSGHFFNLSVQNKL+N+DE+IYIPVT+AEF VL SAFNFIVPYL
Sbjct: 177 EEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFNFIVPYL 236

Query: 347 IGWQTFANAMKLEDASRVNNVNPRSGGELEWSR 249
           +GW  +AN++K +D SRVNN NPRS G+ EWSR
Sbjct: 237 LGWHAYANSIKPDDTSRVNNANPRS-GDFEWSR 268


>sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY1,
           chloroplastic; AltName: Full=DNA-binding protein p24;
           AltName: Full=PR-10a binding factor 2; Short=PBF-2;
           AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags:
           Precursor gi|9651810|gb|AAF91282.1|AF233342_1
           DNA-binding protein p24 [Solanum tuberosum]
          Length = 274

 Score =  332 bits (852), Expect = 8e-89
 Identities = 164/212 (77%), Positives = 183/212 (86%), Gaps = 5/212 (2%)
 Frame = -1

Query: 869 CLQSHYFE-----QNTFIPPQSSQTGPPRVFVGYSIYKGKAALTVDPRAPEFTPLDSGAY 705
           C  S YFE     Q     PQ + T  P+VFVGYSIYKGKAALTV+PR+PEF+PLDSGA+
Sbjct: 65  CRHSDYFEPQQQQQQQQQQPQGAST--PKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAF 122

Query: 704 KLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGSLISLGAKESCEFFHDPFKGKSD 525
           KLS+EG V+LQFAPAAGVRQYDWSRKQVFSLSVTE+GS+ISLGAK+SCEFFHDP KG+SD
Sbjct: 123 KLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSD 182

Query: 524 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINVDESIYIPVTKAEFTVLTSAFNFIVPYLI 345
           EGRVRKVLKVEPLPDGSGHFFNLSVQNKLIN+DE+IYIPVTKAEF VL SAFNF++PYL+
Sbjct: 183 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLL 242

Query: 344 GWQTFANAMKLEDASRVNNVNPRSGGELEWSR 249
           GW T  N+ K EDASR NN NPRSG ELEW+R
Sbjct: 243 GWHTAVNSFKPEDASRSNNANPRSGAELEWNR 274


>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
           gi|157878743|pdb|1L3A|B Chain B, Structure Of The Plant
           Transcriptional Regulator Pbf-2 gi|157878744|pdb|1L3A|C
           Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 gi|157878745|pdb|1L3A|D Chain D,
           Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 227

 Score =  326 bits (836), Expect = 5e-87
 Identities = 161/208 (77%), Positives = 180/208 (86%), Gaps = 5/208 (2%)
 Frame = -1

Query: 860 SHYFE-----QNTFIPPQSSQTGPPRVFVGYSIYKGKAALTVDPRAPEFTPLDSGAYKLS 696
           S YFE     Q     PQ + T  P+VFVGYSIYKGKAALTV+PR+PEF+PLDSGA+KLS
Sbjct: 14  SDYFEPQQQQQQQQQQPQGAST--PKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLS 71

Query: 695 KEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGSLISLGAKESCEFFHDPFKGKSDEGR 516
           +EG V+LQFAPAAGVRQYDWSRKQVFSLSVTE+GS+ISLG K+SCEFFHDP KG+SDEGR
Sbjct: 72  REGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGR 131

Query: 515 VRKVLKVEPLPDGSGHFFNLSVQNKLINVDESIYIPVTKAEFTVLTSAFNFIVPYLIGWQ 336
           VRKVLKVEPLPDGSGHFFNLSVQNKLIN+DE+IYIPVTKAEF VL SAFNF++PYL+GW 
Sbjct: 132 VRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWH 191

Query: 335 TFANAMKLEDASRVNNVNPRSGGELEWS 252
           T  N+ K EDASR NN NPRSG ELEW+
Sbjct: 192 TAVNSFKPEDASRSNNANPRSGAELEWN 219


>ref|NP_172893.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
           gi|75191428|sp|Q9M9S3.1|WHY1_ARATH RecName:
           Full=Single-stranded DNA-binding protein WHY1,
           chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 1; AltName: Full=Protein WHIRLY
           1; Short=AtWHY1; Flags: Precursor
           gi|7262683|gb|AAF43941.1|AC012188_18 Contains similarity
           to a hypothetical protein from Arabidopsis thaliana
           gb|AC002521.2. EST gb|AI995686 comes from this gene
           [Arabidopsis thaliana]
           gi|12083312|gb|AAG48815.1|AF332452_1 putative
           DNA-binding protein p24 [Arabidopsis thaliana]
           gi|13877787|gb|AAK43971.1|AF370156_1 putative
           DNA-binding protein p24 [Arabidopsis thaliana]
           gi|16323418|gb|AAL15203.1| putative DNA-binding protein
           p24 [Arabidopsis thaliana] gi|332191039|gb|AEE29160.1|
           ssDNA-binding transcriptional regulator [Arabidopsis
           thaliana]
          Length = 263

 Score =  324 bits (830), Expect = 3e-86
 Identities = 155/209 (74%), Positives = 181/209 (86%), Gaps = 4/209 (1%)
 Frame = -1

Query: 863 QSHYFEQNTFIPPQSSQTG----PPRVFVGYSIYKGKAALTVDPRAPEFTPLDSGAYKLS 696
           Q+ YFE+  F    SS +     P R +VG+SIYKGKAALTVDPRAPEF  LDSGA+KLS
Sbjct: 55  QTDYFEKQRFGDSSSSPSPAEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLS 114

Query: 695 KEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGSLISLGAKESCEFFHDPFKGKSDEGR 516
           K+GF+LLQFAP+AGVRQYDWS+KQVFSLSVTE+G+L+SLG +ESCEFFHDPFKGKSDEG+
Sbjct: 115 KDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGK 174

Query: 515 VRKVLKVEPLPDGSGHFFNLSVQNKLINVDESIYIPVTKAEFTVLTSAFNFIVPYLIGWQ 336
           VRKVLKVEPLPDGSGHFFNLSVQNKL+NVDESIYIP+T+AEF VL SAFNF++PYLIGW 
Sbjct: 175 VRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWH 234

Query: 335 TFANAMKLEDASRVNNVNPRSGGELEWSR 249
            FAN++K E+ SRVNN +P  GG+ EW+R
Sbjct: 235 AFANSIKPEETSRVNNASPNYGGDYEWNR 263


>ref|NP_001077872.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
           gi|330250525|gb|AEC05619.1| ssDNA-binding
           transcriptional regulator [Arabidopsis thaliana]
          Length = 267

 Score =  322 bits (826), Expect = 8e-86
 Identities = 153/208 (73%), Positives = 181/208 (87%), Gaps = 3/208 (1%)
 Frame = -1

Query: 863 QSHYFEQNTFIPPQSSQTGP---PRVFVGYSIYKGKAALTVDPRAPEFTPLDSGAYKLSK 693
           QS YFE+  F    SSQ      PR +VG+SIYKGKAALT++PRAPEF  L+SGA+KL+K
Sbjct: 60  QSDYFEKQRFGDSSSSQNAEVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTK 119

Query: 692 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGSLISLGAKESCEFFHDPFKGKSDEGRV 513
           EGF+LLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L+SLG +ESCEFFHDPFKGK DEG+V
Sbjct: 120 EGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGDEGKV 179

Query: 512 RKVLKVEPLPDGSGHFFNLSVQNKLINVDESIYIPVTKAEFTVLTSAFNFIVPYLIGWQT 333
           RKVLKVEPLPDGSG FFNLSVQNKL+NVDES+YIP+TKAEF VL SAFNF++P+LIGW  
Sbjct: 180 RKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSA 239

Query: 332 FANAMKLEDASRVNNVNPRSGGELEWSR 249
           FAN++K ED++R+NN +P+ GG+ EWSR
Sbjct: 240 FANSIKPEDSNRLNNASPKYGGDYEWSR 267