BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00007623
         (4551 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vit...   879   0.0  
emb|CBI34953.3| unnamed protein product [Vitis vinifera]              874   0.0  
ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus c...   818   0.0  
ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana] ...   788   0.0  
dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]        788   0.0  

>ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
          Length = 1513

 Score =  879 bits (2270), Expect = 0.0
 Identities = 575/1336 (43%), Positives = 763/1336 (57%), Gaps = 49/1336 (3%)
 Frame = -2

Query: 4550 DDDEEMILPAMHGNVDPAVLASLPPSMQLDLLVQMRERLMAENRQRYQKVKKVPSRFSEL 4371
            D+DEEM+LP M+G VDPAVLA+LPPSMQLDLLVQMRE+LMAENRQ+YQKVKK P+ FSEL
Sbjct: 198  DEDEEMMLPIMNGKVDPAVLAALPPSMQLDLLVQMREKLMAENRQKYQKVKKAPAEFSEL 257

Query: 4370 QIQAYLKTVAFRREIDAVQKSAAGKGLGGMQTSRIASEANREFIFSSSFTGDKQVLASGG 4191
            QIQAYLKTVAFRREID VQKSAAG+G+GG+QTSRIASEANRE+IFSSSFTGDK+ L +GG
Sbjct: 258  QIQAYLKTVAFRREIDEVQKSAAGRGVGGVQTSRIASEANREYIFSSSFTGDKEALTNGG 317

Query: 4190 EVKTDAR----PTENSRVDVSSKAFNDIVSITRSNQTEECSRDTAGTELPKGVETYVDER 4023
              K   +    PTE         + N++ S ++SN   E       +     VETY+DER
Sbjct: 318  VEKNGDKQYQIPTE-----CPPDSPNNVASTSKSNTAAESVAGEPASVFNDDVETYLDER 372

Query: 4022 GRIRVSRGRAMGIRMTRDLQRNLELMKESEQVRVPSEEYVNNEXXXXXXXXXXXXXXXXX 3843
            GR+RVSR RAMGIRMTRDLQRNL+LMKE EQ R                           
Sbjct: 373  GRVRVSRVRAMGIRMTRDLQRNLDLMKEIEQDRT-------------------------- 406

Query: 3842 XXXPKEGNEAMLHTSQSYEDPTLQGVASLEISFETNGEQK--SGDDEDLFARLVAGETLM 3669
                 E N  ++  +++ E       AS+EISFE +GE    +GDDE LFA LVAG  ++
Sbjct: 407  ----NEDNNGIVTLNKTNEQSIPDNGASIEISFEDDGEHNCLNGDDE-LFASLVAGNPVI 461

Query: 3668 NIPADSSPAEK-PSDLEDISASDCEWEDGVIDGKSAVLNKQTVHELNSYLAHDDMEDDSG 3492
               +D++ + + P+D    SASD +WE+G+I+ K          E+   +  + + DDS 
Sbjct: 462  ISSSDAALSNRRPAD----SASDSDWEEGIIEEKGGSCIDNVGVEIKPSVMEERVSDDSE 517

Query: 3491 VEWEDGCASISKDVSPPPAECSESLSRGALEEEAEYQEAIRRSLVDLKGSGDSNASCENL 3312
            VEWE+G   +SK+VS  P++     S+G LEEE + QEAIRRSL DL   G   A  E+ 
Sbjct: 518  VEWEEGPCDVSKNVSACPSKFGNPASKGRLEEETDLQEAIRRSLEDL---GGEKAVGESF 574

Query: 3311 KSGDAGLIDNLG---ESSSIINEYSIPESSIPVKDNVKSCKSSFETQTNKMIDNQVKLDM 3141
            K  D    D      +  +   +    E   P+ +N+     SF     K++D   KLD 
Sbjct: 575  KDSDIKEYDEKVHEVKDDAFHKKNDKAEQDFPL-ENLPEQNGSF----CKIVDVVEKLDS 629

Query: 3140 PQHSNNSETQSTPRLGVDLVGLELSP--GDAPGRCSNSVQDKTNDL--RTQEEIIERVKN 2973
                N S++       +D  G +L+    D P    + ++   N+L    Q+++ E    
Sbjct: 630  VDGMNTSQS-------IDASGRQLTSLLEDNP----HKMEVLNNELCEEYQKDVGESGNV 678

Query: 2972 CNPEKDI-LIQEQQGDIKSSKVXXXXXXXXXXXXXXXTPYTLSGDLHTFTHVDEPHLELE 2796
                 ++ +I+EQ        V                   + G++   T  D    + E
Sbjct: 679  GRETNEVYMIREQLSHASKKSVDTSTLANSCSGDGSHISDAMLGNMPDATPADSSKYDSE 738

Query: 2795 AKVDDRLHESLISESSSFADVENKSDVENKSDFEPKSSPGHNVLHF--EKEKYGGNSSFI 2622
            A      H +   E++  A    ++ ++ K+  E K + G+N ++F  EKE+  GNS   
Sbjct: 739  AA--PTWHSN---ETTDPAIPPGETCIKGKTAVEQKLAEGNNHVNFFMEKERNMGNSVTE 793

Query: 2621 ENMVEQVPXXXXXXXXXXXXXXXXXXXLGNEQRRLERNAESVSGEMFAECQELLQMFGLP 2442
            +    Q                     LG+EQR+LERNA+ VS EMFAECQELLQMFGLP
Sbjct: 794  DKKNVQF-GVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQELLQMFGLP 852

Query: 2441 YIIAPMEAEAQCAFMELANLVDGVVTDDSDAFLFGARSVYKNIFDDRKYVETYFMKDIES 2262
            YIIAPMEAEAQCA+MELANLVDGVVTDDSD FLFGARSVYKNIFD+RKYVETYFMKDIE+
Sbjct: 853  YIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDERKYVETYFMKDIET 912

Query: 2261 ELGLDRDKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLRQFRKWIESPDPSIL 2082
            ELGL+R+K+IRMALLLGSDYTEG+SGIGIVNAIEV+N+FPEEDGL +FR+W+ESPDP+IL
Sbjct: 913  ELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWVESPDPNIL 972

Query: 2081 GKFDVQEGCGSRKRGSKI----RENEKNKHGGKLEGSSDCDLNMXXXXXXXXXXKQIFME 1914
            GK +V+ G  SRKRGSK+    + + KN      E  S  + N           KQIFM+
Sbjct: 973  GKVNVETGSSSRKRGSKVGSGDQSHSKNNMDAFDENVSQNEHN--ESVDDIQSGKQIFMD 1030

Query: 1913 KHRNVSKNWHIPSTFPSDVVIAAYASPQVDNSTDSFSWGRPDLVTLHKVCWEKFGWGSKK 1734
            KHRNVSKNWHIPS+FPS+ VI+AYASPQVD ST+ FSWG+PDL  L K+C EKFGWG++K
Sbjct: 1031 KHRNVSKNWHIPSSFPSETVISAYASPQVDQSTEPFSWGKPDLFVLRKLCLEKFGWGNQK 1090

Query: 1733 ADEVLLPVLKEYDKHETQLRLEAFYTFNEKFAKIRSKRIKSALKGVRGNKSEDVMNDSGE 1554
            ADE+LLPVLKEY+KHETQLRLEAFYTFNE+FAKIRSKRIK A+KG+ G+++ ++++D+ +
Sbjct: 1091 ADELLLPVLKEYNKHETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQTSELLDDAVQ 1150

Query: 1553 GDSKNRKRRKA------NYVEAKTNEVEKDSGLRDHGVIKQKIAKILKPKQSRGRNSQGE 1392
              SK  KR K       N  E   NE+   +         +       PKQSR R  +  
Sbjct: 1151 EGSKRGKRSKESPSKLDNKQEIPINEIGSTAARNGSNATAK-----TTPKQSRRRRIRKP 1205

Query: 1391 A-VEGIDTQPSEEASMTXXXXXXXXXXXXXXXXXXXXXRKKNKINSCLE-----DVGTSS 1230
               +G   +P  +A                         ++ +  S ++     ++  +S
Sbjct: 1206 VPSDGESAEPPVQAGQKQCNDTGSSKNGRGKGRKKGRGVRRGRGRSRIQENPGSEISGTS 1265

Query: 1229 DGEFNNETEERAP-WEFERPSKVRRSERPRKAVNYTISNEDILEECCA--------TTSK 1077
              + N+  EE  P  + +  ++VRRS+RPRKAVNY   + +I +E  +        T  +
Sbjct: 1266 SSDCNSGNEEEVPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGKSLDQGNQKCTNEE 1325

Query: 1076 LDGFETSHNKVI----GNSLSGKXXXXXXXXXXXXXXXXEDFLESGGGFCSEVTEPSQAN 909
                E S +++I        SGK                 D+ E+ G  C +  E  Q +
Sbjct: 1326 AVELEPSRDQIICGDAAADFSGK-NQQKAEDSSPGEDLCGDYPETEGVMCMDENEIGQLD 1384

Query: 908  LGDIGNAVVEDQLSEGYLKMGGGFCLEDDAARGNTDEYPGKAAESSQVNSRSDGDPLAED 729
              D  +    D+ SE YLKMGGGFC+E+D    + +      A++  +    D +     
Sbjct: 1385 SRD-DDPTFADEFSEDYLKMGGGFCVEEDEKDKDHNARTYDPAKADTIYENPDPESELAI 1443

Query: 728  HISEEYLKI---GGGF 690
            H +E    +    GGF
Sbjct: 1444 HPAESVSSLQNTAGGF 1459


>emb|CBI34953.3| unnamed protein product [Vitis vinifera]
          Length = 1449

 Score =  874 bits (2259), Expect = 0.0
 Identities = 569/1325 (42%), Positives = 750/1325 (56%), Gaps = 38/1325 (2%)
 Frame = -2

Query: 4550 DDDEEMILPAMHGNVDPAVLASLPPSMQLDLLVQMRERLMAENRQRYQKVKKVPSRFSEL 4371
            D+DEEM+LP M+G VDPAVLA+LPPSMQLDLLVQMRE+LMAENRQ+YQKVKK P+ FSEL
Sbjct: 198  DEDEEMMLPIMNGKVDPAVLAALPPSMQLDLLVQMREKLMAENRQKYQKVKKAPAEFSEL 257

Query: 4370 QIQAYLKTVAFRREIDAVQKSAAGKGLGGMQTSRIASEANREFIFSSSFTGDKQVLASGG 4191
            QIQAYLKTVAFRREID VQKSAAG+G+GG+QTSRIASEANRE+IFSSSFTGDK+ L +GG
Sbjct: 258  QIQAYLKTVAFRREIDEVQKSAAGRGVGGVQTSRIASEANREYIFSSSFTGDKEALTNGG 317

Query: 4190 EVKTDAR----PTENSRVDVSSKAFNDIVSITRSNQTEECSRDTAGTELPKGVETYVDER 4023
              K   +    PTE         + N++ S ++SN   E       +     VETY+DER
Sbjct: 318  VEKNGDKQYQIPTE-----CPPDSPNNVASTSKSNTAAESVAGEPASVFNDDVETYLDER 372

Query: 4022 GRIRVSRGRAMGIRMTRDLQRNLELMKESEQVRVPSEEYVNNEXXXXXXXXXXXXXXXXX 3843
            GR+RVSR RAMGIRMTRDLQRNL+LMKE EQ R                           
Sbjct: 373  GRVRVSRVRAMGIRMTRDLQRNLDLMKEIEQDRT-------------------------- 406

Query: 3842 XXXPKEGNEAMLHTSQSYEDPTLQGVASLEISFETNGEQK--SGDDEDLFARLVAGETLM 3669
                 E N  ++  +++ E       AS+EISFE +GE    +GDDE LFA LVAG  ++
Sbjct: 407  ----NEDNNGIVTLNKTNEQSIPDNGASIEISFEDDGEHNCLNGDDE-LFASLVAGNPVI 461

Query: 3668 NIPADSSPAEK-PSDLEDISASDCEWEDGVIDGKSAVLNKQTVHELNSYLAHDDMEDDSG 3492
               +D++ + + P+D    SASD +WE+G+I+ K          E+   +  + + DDS 
Sbjct: 462  ISSSDAALSNRRPAD----SASDSDWEEGIIEEKGGSCIDNVGVEIKPSVMEERVSDDSE 517

Query: 3491 VEWEDGCASISKDVSPPPAECSESLSRGALEEEAEYQEAIRRSLVDLKGSGDSNASCENL 3312
            VEWE+G   +SK+VS  P++     S+G LEEE + QEAIRRSL DL   G   A  E+ 
Sbjct: 518  VEWEEGPCDVSKNVSACPSKFGNPASKGRLEEETDLQEAIRRSLEDL---GGEKAVGESF 574

Query: 3311 KSGDAGLIDNLGESSSIINEYSIPE-SSIPVKDNVKSCKSSFETQTNKMIDNQVKLDMPQ 3135
            K  D             I EY   +  S+   +  +S  +S    T+ + DN  K+++  
Sbjct: 575  KDSD-------------IKEYDEKKLDSVDGMNTSQSIDASGRQLTSLLEDNPHKMEVLN 621

Query: 3134 HSNNSETQSTPRLGVDLVGLELSPGDAPGRCSNSVQDKTNDLRTQEEIIERVKNCNPEKD 2955
            +    E Q         VG            S +V  +TN++    E +      + +  
Sbjct: 622  NELCEEYQKD-------VGE-----------SGNVGRETNEVYMIREQLSHASKKSVDTS 663

Query: 2954 ILIQEQQGDIKSSKVXXXXXXXXXXXXXXXTPYTLSGDLHTFTHVDEPHLELEAKVDDRL 2775
             L     GD   S +                   + G++   T  D    + EA      
Sbjct: 664  TLANSCSGD--GSHISD----------------AMLGNMPDATPADSSKYDSEAA--PTW 703

Query: 2774 HESLISESSSFADVENKSDVENKSDFEPKSSPGHNVLHF--EKEKYGGNSSFIENMVEQV 2601
            H +   E++  A    ++ ++ K+  E K + G+N ++F  EKE+  GNS   +    Q 
Sbjct: 704  HSN---ETTDPAIPPGETCIKGKTAVEQKLAEGNNHVNFFMEKERNMGNSVTEDKKNVQF 760

Query: 2600 PXXXXXXXXXXXXXXXXXXXLGNEQRRLERNAESVSGEMFAECQELLQMFGLPYIIAPME 2421
                                LG+EQR+LERNA+ VS EMFAECQELLQMFGLPYIIAPME
Sbjct: 761  -GVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQELLQMFGLPYIIAPME 819

Query: 2420 AEAQCAFMELANLVDGVVTDDSDAFLFGARSVYKNIFDDRKYVETYFMKDIESELGLDRD 2241
            AEAQCA+MELANLVDGVVTDDSD FLFGARSVYKNIFD+RKYVETYFMKDIE+ELGL+R+
Sbjct: 820  AEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDERKYVETYFMKDIETELGLNRE 879

Query: 2240 KLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLRQFRKWIESPDPSILGKFDVQE 2061
            K+IRMALLLGSDYTEG+SGIGIVNAIEV+N+FPEEDGL +FR+W+ESPDP+ILGK +V+ 
Sbjct: 880  KVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWVESPDPNILGKVNVET 939

Query: 2060 GCGSRKRGSKIRENEKNKHGGKLEGSSDCDLNMXXXXXXXXXXKQIFMEKHRNVSKNWHI 1881
            G  SRKRGSK  E+  +   GK                      QIFM+KHRNVSKNWHI
Sbjct: 940  GSSSRKRGSKHNESVDDIQSGK----------------------QIFMDKHRNVSKNWHI 977

Query: 1880 PSTFPSDVVIAAYASPQVDNSTDSFSWGRPDLVTLHKVCWEKFGWGSKKADEVLLPVLKE 1701
            PS+FPS+ VI+AYASPQVD ST+ FSWG+PDL  L K+C EKFGWG++KADE+LLPVLKE
Sbjct: 978  PSSFPSETVISAYASPQVDQSTEPFSWGKPDLFVLRKLCLEKFGWGNQKADELLLPVLKE 1037

Query: 1700 YDKHETQLRLEAFYTFNEKFAKIRSKRIKSALKGVRGNKSEDVMNDSGEGDSKNRKRRKA 1521
            Y+KHETQLRLEAFYTFNE+FAKIRSKRIK A+KG+ G+++ ++++D+ +  SK  KR K 
Sbjct: 1038 YNKHETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQTSELLDDAVQEGSKRGKRSKE 1097

Query: 1520 ------NYVEAKTNEVEKDSGLRDHGVIKQKIAKILKPKQSRGRNSQGEA-VEGIDTQPS 1362
                  N  E   NE+   +         +       PKQSR R  +     +G   +P 
Sbjct: 1098 SPSKLDNKQEIPINEIGSTAARNGSNATAK-----TTPKQSRRRRIRKPVPSDGESAEPP 1152

Query: 1361 EEASMTXXXXXXXXXXXXXXXXXXXXXRKKNKINSCLE-----DVGTSSDGEFNNETEER 1197
             +A                         ++ +  S ++     ++  +S  + N+  EE 
Sbjct: 1153 VQAGQKQCNDTGSSKNGRGKGRKKGRGVRRGRGRSRIQENPGSEISGTSSSDCNSGNEEE 1212

Query: 1196 AP-WEFERPSKVRRSERPRKAVNYTISNEDILEECCA--------TTSKLDGFETSHNKV 1044
             P  + +  ++VRRS+RPRKAVNY   + +I +E  +        T  +    E S +++
Sbjct: 1213 VPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGKSLDQGNQKCTNEEAVELEPSRDQI 1272

Query: 1043 I----GNSLSGKXXXXXXXXXXXXXXXXEDFLESGGGFCSEVTEPSQANLGDIGNAVVED 876
            I        SGK                 D+ E+ G  C +  E  Q +  D  +    D
Sbjct: 1273 ICGDAAADFSGK-NQQKAEDSSPGEDLCGDYPETEGVMCMDENEIGQLDSRD-DDPTFAD 1330

Query: 875  QLSEGYLKMGGGFCLEDDAARGNTDEYPGKAAESSQVNSRSDGDPLAEDHISEEYLKI-- 702
            + SE YLKMGGGFC+E+D    + +      A++  +    D +     H +E    +  
Sbjct: 1331 EFSEDYLKMGGGFCVEEDEKDKDHNARTYDPAKADTIYENPDPESELAIHPAESVSSLQN 1390

Query: 701  -GGGF 690
              GGF
Sbjct: 1391 TAGGF 1395


>ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
            gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3,
            putative [Ricinus communis]
          Length = 1641

 Score =  818 bits (2113), Expect = 0.0
 Identities = 553/1354 (40%), Positives = 727/1354 (53%), Gaps = 49/1354 (3%)
 Frame = -2

Query: 4550 DDDEEMILPAMHGNVDPAVLASLPPSMQLDLLVQMRERLMAENRQRYQKVKKVPSRFSEL 4371
            D+ EEMILP + G VDP VLA+LPPSMQLDLLVQMRERL+AENRQ+YQKVKK P +FSEL
Sbjct: 269  DEVEEMILPEICGKVDPTVLAALPPSMQLDLLVQMRERLIAENRQKYQKVKKAPEKFSEL 328

Query: 4370 QIQAYLKTVAFRREIDAVQKSAAGKGLGGMQTSRIASEANREFIFSSSFTGDKQVLASGG 4191
            QI+AYLKTVAFRREID VQK+AAG G+GG+Q+SRIASEANREFIFSSSFTGDKQ+L S G
Sbjct: 329  QIEAYLKTVAFRREIDHVQKAAAGNGVGGVQSSRIASEANREFIFSSSFTGDKQLLTSTG 388

Query: 4190 EVKTDARPTENSRVDVSSKAFNDIVSITRSNQTEECSRDTAGTELPKGVETYVDERGRIR 4011
              +   +  +   ++ +  + N + S ++SN      +D       + VETY+DE GRIR
Sbjct: 389  VQRNGNKQQQAPTMNPTFDSMNCVTSTSKSNAVSGSVQDEPRRVFDEDVETYLDENGRIR 448

Query: 4010 VSRGRAMGIRMTRDLQRNLELMKESEQVRVPSEEYVNNEXXXXXXXXXXXXXXXXXXXXP 3831
            VSR RAMG+RMTRDLQRNL+LMKE EQ R  + E   ++                     
Sbjct: 449  VSRVRAMGMRMTRDLQRNLDLMKEIEQERTHAIETAPSQSELTRDKIGSPKSFPSKKLHV 508

Query: 3830 KEGNEA---MLHTSQSYEDPTLQGVASLEISFETNGEQKSGD-DEDLFARLVAGETLMNI 3663
            +  ++     +  ++  +   L    S++ISFE +G  K  D D+D+F  LVAG+ + NI
Sbjct: 509  ESSHDKHSDSVKLNERNQQSMLNDEGSIQISFEADGRSKCLDSDDDVFTSLVAGQPV-NI 567

Query: 3662 PADSSPAEKPSDLEDISASDCEWEDGVIDGKSAVLNKQTVHELNSYLAHDDMEDDSGVEW 3483
            P+  +   +    +  SASD +WE+G I+ +    +     E N  L   ++ DDS VEW
Sbjct: 568  PSVDNITSRIQTSD--SASDGDWEEGTIETRGNSSSNNLALETNPPLKEKNISDDSEVEW 625

Query: 3482 EDGCASISKDVSPPPAECSESLSRGALEEEAEYQEAIRRSLVDLKGSGDSNASCEN--LK 3309
            EDG      + S  P+E     SRG +EEEA+ QEAIRRSL DL G   +N   E+  LK
Sbjct: 626  EDGGGD--HENSSFPSESKMPASRGYMEEEADLQEAIRRSLEDLGGEIFNNTLSEHEKLK 683

Query: 3308 SGDAGLIDNLGESSSIINEYSIPESSIPVKDNVKSCKSSFETQTNKMIDNQVKLDMPQHS 3129
              D  +  ++G      N   +    +P KD  +  +   E      ID   + D+ Q  
Sbjct: 684  ISDKNVYKDVGFLDQEDNTGGL---ILPEKDVTQQDQPFSEISATGKIDKVGQYDISQVF 740

Query: 3128 NN------SETQSTPRLGV---DLVGLELSPGDA-PGRCSNSVQDKTNDLRTQEE----- 2994
            ++      SE      + +    L   ++   D  P R  N        + + E      
Sbjct: 741  SSQSQLAFSEAHDPDNMDILTNKLYERDMGSNDGQPSRALNMEGSVCRGMSSAESAAPLE 800

Query: 2993 ---IIERVKNCNPEKDILIQEQQGDIKSSKVXXXXXXXXXXXXXXXTPYTLSGDLHTFTH 2823
               I+++    N E         G   S+K+               +  +   D      
Sbjct: 801  THVILKQFSETNVE-------DMGLSTSTKMRSGISNISKAAWSNVSFASSIDDDRNKVE 853

Query: 2822 VDEPHLELEAKVDDRLHESLISESSSFADVENKSDVENKSDFEPKSSPGHNVLHFEKEKY 2643
             +   L  E K  +   +S+   + S + +E   ++   +D E K +   N  H   EK 
Sbjct: 854  AEPSVLVNEEKRPETYCQSVKITNPSTSVMEPSINLAIGTDVESKLAGEKNSGHLFNEKK 913

Query: 2642 GGNSSFIENMVEQVPXXXXXXXXXXXXXXXXXXXLGNEQRRLERNAESVSGEMFAECQEL 2463
                  + N   +                     LG+EQ++LERNAESVS EMFAECQEL
Sbjct: 914  QDMEKVVSNENLREDFSEVTLQEEILILGQERMNLGSEQKKLERNAESVSSEMFAECQEL 973

Query: 2462 LQMFGLPYIIAPMEAEAQCAFMELANLVDGVVTDDSDAFLFGARSVYKNIFDDRKYVETY 2283
            LQMFGLPYIIAPMEAEAQCA+MELANLVDGVVTDDSD FLFGAR+VYKNIFDDRKYVETY
Sbjct: 974  LQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARNVYKNIFDDRKYVETY 1033

Query: 2282 FMKDIESELGLDRDKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLRQFRKWIE 2103
            FMKDIE ELGL R+KLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGL +FR+WI 
Sbjct: 1034 FMKDIERELGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLEKFREWIY 1093

Query: 2102 SPDPSILGKFDVQEGCGSRKRGSKIREN--------EKNKHGGKLEGSSDCDLNMXXXXX 1947
            SPDP+ILGK DV++G   R++G     N        +K     K E S+D          
Sbjct: 1094 SPDPTILGKLDVRDGRSMRRKGESDSANNNVVDSFGKKVSESHKEEDSAD---------- 1143

Query: 1946 XXXXXKQIFMEKHRNVSKNWHIPSTFPSDVVIAAYASPQVDNSTDSFSWGRPDLVTLHK- 1770
                 +QIFM+KHRNVSKNWH+PS+FPS+ VI+AY SPQVD ST+ F+WG+PDL  L + 
Sbjct: 1144 HTQEIRQIFMDKHRNVSKNWHVPSSFPSEAVISAYMSPQVDKSTEPFTWGKPDLHVLRRQ 1203

Query: 1769 -----VCWEKFGWGSKKADEVLLPVLKEYDKHETQLRLEAFYTFNEKFAKIRSKRIKSAL 1605
                 +CWEKF WG +K+DE+LLPVLKEY+KHETQLRLEAFYTFNE+FAKIRS+RIK AL
Sbjct: 1204 VMIFIICWEKFAWGVQKSDELLLPVLKEYNKHETQLRLEAFYTFNERFAKIRSRRIKKAL 1263

Query: 1604 KGVRGNKSEDVMNDSGEGDSKNRKRRKANYVEAKTNEVEKDSGLRDHGVIKQKIAKILKP 1425
            KG+ G +S ++M+D  +  SK+RK+R     E+  +E +        G+   K   + K 
Sbjct: 1264 KGITGYQSSEMMDDDVKDSSKSRKKRTIGPGESVDSEPDAALKREREGLFSDKTDSLEKS 1323

Query: 1424 KQSRGR-NSQGEAVEGIDTQPSEEASMTXXXXXXXXXXXXXXXXXXXXXRKKNK---INS 1257
               R R  + G+ V      P +                          R + +     S
Sbjct: 1324 TTKRSRKRTAGQPVLTERENPGQHLQAEGRRKTHKGQCGDGRGKGRGRGRGRGRGRGKGS 1383

Query: 1256 CLEDVGTSSDGEFNNETEERAPWE-FERPSKVRRSERPRKAVNYTISNEDILEECCATTS 1080
             +E   +S D    ++ E     E  E P ++RRS R RK  NYT               
Sbjct: 1384 GIELSDSSYDYVSGDDDELEVRIEKSEGPQELRRSTRSRKPANYT--------------- 1428

Query: 1079 KLDGFETSHNKVI--GNSLSGKXXXXXXXXXXXXXXXXEDFLESGGGFCSEVTEPSQANL 906
             LDGF+   +  +  G+  S +                        G   + T+ S   L
Sbjct: 1429 -LDGFKVDVDSAVDRGDKQSNESAAELDLF----------------GVIGKSTDASSC-L 1470

Query: 905  GDIGNAVVEDQLSEGYLK---MGGGFCLEDDAARGNTDEYPGKAAESSQVNSRSDGDPLA 735
                   VED L E + K     G  CL DD   G+  +YPG A+               
Sbjct: 1471 NGKEQHKVEDALPEDFSKDYLENGQHCLTDD--NGSEPKYPGGAS--------------- 1513

Query: 734  EDHISEEYLKIGGGFCLDDDE-AADGNRDNRPSV 636
               +S++YLK+GGGFC+D+ E   D +  + PS+
Sbjct: 1514 ---VSKDYLKMGGGFCMDESETCTDQDAAHSPSM 1544


>ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
            gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA
            repair protein UVH3; AltName: Full=ERCC5 homolog;
            AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
            Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
            AltName: Full=XPG homolog gi|13649704|gb|AAK37472.1| UV
            hypersensitive protein [Arabidopsis thaliana]
            gi|332643872|gb|AEE77393.1| DNA repair protein UVH3
            [Arabidopsis thaliana]
          Length = 1479

 Score =  788 bits (2036), Expect = 0.0
 Identities = 525/1304 (40%), Positives = 724/1304 (55%), Gaps = 27/1304 (2%)
 Frame = -2

Query: 4550 DDDEEMILPAMHGNVDPAVLASLPPSMQLDLLVQMRERLMAENRQRYQKVKKVPSRFSEL 4371
            D DEE++LP M GN+DPAVLASLPPSMQLDLL QMRE+LMAENRQ+YQKVKK P +FSEL
Sbjct: 265  DGDEEILLPVMDGNIDPAVLASLPPSMQLDLLAQMREKLMAENRQKYQKVKKAPEKFSEL 324

Query: 4370 QIQAYLKTVAFRREIDAVQKSAAGKGLGGMQTSRIASEANREFIFSSSFTGDKQVLASGG 4191
            QI+AYLKTVAFRREI+ VQ+SA G+ +GG+QTSRIASEANREFIFSSSF GDK+VLAS  
Sbjct: 325  QIEAYLKTVAFRREINEVQRSAGGRAVGGVQTSRIASEANREFIFSSSFAGDKEVLASAR 384

Query: 4190 EVKTDARPTENSRVDVSSKAFNDIVSITRSNQTEECSRDTAGTELPKGVETYVDERGRIR 4011
            E + D    + S+  +     N    + +S+ T E  RD       + +E Y+DERGR R
Sbjct: 385  EGRNDENQKKTSQQSLPVSVKN-ASPLKKSDATIELDRDEPKNP-DENIEVYIDERGRFR 442

Query: 4010 VSRGRAMGIRMTRDLQRNLELMKESEQVRVPSEEYVNNEXXXXXXXXXXXXXXXXXXXXP 3831
            + R R MGI+MTRD+QRNL LMKE E+    S    N+E                     
Sbjct: 443  I-RNRHMGIQMTRDIQRNLHLMKEKERTASGSMAK-NDETFSAWENFPTEDQFLEKSPVE 500

Query: 3830 KEGNEAMLHTSQSYEDPTLQGVASLEISFETNGEQKS-GDDEDLFARLVAGETLMNIPAD 3654
            K+  +  +      +D  L   +S+EISF+ +G  K   D++D+F +L AG  +     +
Sbjct: 501  KDVVDLEIQN----DDSMLHPPSSIEISFDHDGGGKDLNDEDDMFLQLAAGGPVTISSTE 556

Query: 3653 SSPAEKPSDLEDISASDCEWEDGVIDGKSAVLNKQTVHELNSYLAHDDMEDDSGVEWED- 3477
            + P E  S      ASD +WE+  ++  ++V   +    L++     D+    GV WE+ 
Sbjct: 557  NDPKEDTSPW----ASDSDWEEVPVEQNTSVSKLEA--NLSNQHIPKDISIAEGVAWEEY 610

Query: 3476 GCASISKDVSPPPAECSESLSRGALEEEAEYQEAIRRSLVDLKGSGDSNASCENLKSGDA 3297
             C + +  V     +    +++G LEEEA+ QEAI++SL++L           + +SGD 
Sbjct: 611  SCKNANNSVEN---DTVTKITKGYLEEEADLQEAIKKSLLEL----------HDKESGDV 657

Query: 3296 GLIDNLGESSSIINEYSIPESSIPVKDNVKSCKSSFETQTNKMIDNQVKLDMPQHSNNSE 3117
                 L E+ S+     + +   P +D++ S ++  E +  + +D    L      +   
Sbjct: 658  -----LEENQSVRVNLVVDK---PSEDSLCSRETVGEAEEERFLDEITILKTSGAISEQS 709

Query: 3116 TQSTPRLGVDLVGLELSPGDAPGRCSNSVQDK-TNDLRTQEEIIERVKNCNPEKDILIQE 2940
              S         G+    G  P   SN+V    +N L   + +I      +PEK + +  
Sbjct: 710  NTSVAGNADGQKGITKQFGTHPSSGSNNVSHAVSNKLSKVKSVI------SPEKALNVAS 763

Query: 2939 QQGDI----KSSKVXXXXXXXXXXXXXXXTPYT---LSGDLHTFTHVD-EPHLELEAKVD 2784
            Q   +    K                    P     ++G L    + D E  + ++ K D
Sbjct: 764  QNRMLSTMAKQHNEEGSESFGGESVKVSAMPIADEEITGFLDEKDNADGESSIMMDDKRD 823

Query: 2783 --DRLHESLISESSSFADVENKS------DVENKSDFEPKSSPGHNVLHFEK----EKYG 2640
               R  +SL++ES   +    +S      D +++++   +++   +  + +     E+ G
Sbjct: 824  YSRRKIQSLVTESRDPSRNVVRSRIGILHDTDSQNERREENNSNEHTFNIDSSTDFEEKG 883

Query: 2639 GNSSFIENMVEQVPXXXXXXXXXXXXXXXXXXXLGNEQRRLERNAESVSGEMFAECQELL 2460
                F E  +E+                     LG+EQR+LERNAESVS EMFAECQELL
Sbjct: 884  VPVEFSEANIEE----------EIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELL 933

Query: 2459 QMFGLPYIIAPMEAEAQCAFMELANLVDGVVTDDSDAFLFGARSVYKNIFDDRKYVETYF 2280
            Q+FG+PYIIAPMEAEAQCAFME +NLVDG+VTDDSD FLFGARSVYKNIFDDRKYVETYF
Sbjct: 934  QIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYF 993

Query: 2279 MKDIESELGLDRDKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLRQFRKWIES 2100
            MKDIE ELGL RDK+IRMA+LLGSDYTEGISGIGIVNAIEVV AFPEEDGL++FR+W+ES
Sbjct: 994  MKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVES 1053

Query: 2099 PDPSILGKFDVQEGCGSRKRGSKIRENEKNKHGGKLEGSSDCDLNMXXXXXXXXXXKQIF 1920
            PDP+ILGK D + G   +KRGS   +N+     G + G+S  D             KQIF
Sbjct: 1054 PDPTILGKTDAKTGSKVKKRGSASVDNK-----GIISGASTDDTE---------EIKQIF 1099

Query: 1919 MEKHRNVSKNWHIPSTFPSDVVIAAYASPQVDNSTDSFSWGRPDLVTLHKVCWEKFGWGS 1740
            M++HR VSKNWHIP TFPS+ VI+AY +PQVD ST+ FSWG+PDL  L K+CWEKF W  
Sbjct: 1100 MDQHRKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFSWGKPDLSVLRKLCWEKFNWNG 1159

Query: 1739 KKADEVLLPVLKEYDKHETQLRLEAFYTFNEKFAKIRSKRIKSALKGVRGNKSEDVMNDS 1560
            KK DE+LLPVLKEY+K ETQLR+EAFY+FNE+FAKIRSKRI  A+KG+ G  S DV + +
Sbjct: 1160 KKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKIRSKRINKAVKGIGGGLSSDVADHT 1219

Query: 1559 -GEGDSKNRKRRKANYVEAKTNEVEKDSGLRDHGVIKQKIAKILKPKQSRGRNSQGEAVE 1383
              EG  K  K++ A +     N  +KDS + +  V K K  ++ KP  SRGR    +   
Sbjct: 1220 LQEGPRKRNKKKVAPHETEDNNTSDKDSPIANEKV-KNKRKRLEKPSSSRGRGRAQKRGR 1278

Query: 1382 GIDTQPSEEASMTXXXXXXXXXXXXXXXXXXXXXRKKNKINSCLEDVGTSSDGEFNNETE 1203
            G                                   + ++    +D+   SDG  +++ +
Sbjct: 1279 G-----------------------------------RGRVQ---KDLLELSDGSSDDDDD 1300

Query: 1202 ERAPWEFE-RPSKVRRSERPRKAVNYTISNEDILEECCATT-SKLDGFETSHNKVIGNSL 1029
            +    E E +P+ +++S R R  V Y+   +D L+E  +   S  + FE      IGN  
Sbjct: 1301 DDKVVELEAKPANLQKSTRSRNPVMYSAKEDDELDESRSNEGSPSENFEEVDEGRIGNDD 1360

Query: 1028 SGKXXXXXXXXXXXXXXXXEDFLESGGGFCSEVTEPSQANLGDIGNAVVEDQLSEGYLKM 849
            S                  ED++++GGGFC++  +       +IG+A +ED+ ++ Y  +
Sbjct: 1361 S--------VDASINDCPSEDYIQTGGGFCADEAD-------EIGDAHLEDKATDDYRVI 1405

Query: 848  GGGFCL-EDDAARGNTDEYPGKAAESSQVNSRSDGDPLAEDHIS 720
            GGGFC+ ED+ A  NT +   +  +      R  G    E+  S
Sbjct: 1406 GGGFCVDEDETAEENTMDDDAEILKMESEEQRKKGKRRNEEDAS 1449


>dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1522

 Score =  788 bits (2034), Expect = 0.0
 Identities = 528/1307 (40%), Positives = 725/1307 (55%), Gaps = 30/1307 (2%)
 Frame = -2

Query: 4550 DDDEEMILPAMHGNVDPAVLASLPPSMQLDLLVQMRERLMAENRQRYQKVKKVPSRFSEL 4371
            D DEE++LP M GN+DPAVLASLPPSMQLDLL QMRE+LMAENRQ+YQKVKK P +FSEL
Sbjct: 305  DGDEEILLPVMDGNIDPAVLASLPPSMQLDLLAQMREKLMAENRQKYQKVKKAPEKFSEL 364

Query: 4370 QIQAYLKTVAFRREIDAVQKSAAGKGLGGMQTSRIASEANREFIFSSSFTGDKQVLASGG 4191
            QI+AYLKTVAFRREI+ VQ+SA G+ +GG+QTSRIASEANREFIFSSSF GDK+VLAS  
Sbjct: 365  QIEAYLKTVAFRREINEVQRSAGGRAVGGVQTSRIASEANREFIFSSSFAGDKEVLASAR 424

Query: 4190 EVKTDARPTENSRVDVSSKAFNDIVSITRSNQTEECSRDTAGTELPKGVETYVDERGRIR 4011
            E + D    + S+  +     N    + +S+ T E  RD       + +E Y+DERGR R
Sbjct: 425  EGRNDENQKKTSQQSLPVSVKN-ASPLKKSDATIELDRDEPKNP-DENIEVYIDERGRFR 482

Query: 4010 VSRGRAMGIRMTRDLQRNLELMKESEQVRVPSEEYVNNEXXXXXXXXXXXXXXXXXXXXP 3831
            + R R MGI+MTRD+QRNL LMKE E+    S    N+E                     
Sbjct: 483  I-RNRHMGIQMTRDIQRNLHLMKEKERTASGSMAK-NDETFSAWENFPTEDQFLEKSPVE 540

Query: 3830 KEGNEAMLHTSQSYEDPTLQGVASLEISFETNGEQKS-GDDEDLFARLVAGETLMNIPAD 3654
            K+  +  +      +D  L   +S+EISF+ +G  K   D++D+F +L AG  +     +
Sbjct: 541  KDVVDLEIQN----DDSMLHPPSSIEISFDHDGGGKDLNDEDDMFLQLAAGGPVTISSTE 596

Query: 3653 SSPAEKPSDLEDISASDCEWEDGVIDGKSAVLNKQTVHELNSYLAHDDMEDDSGVEWED- 3477
            + P E  S      ASD +WE+  ++  ++V   +    L++     D+    GV WE+ 
Sbjct: 597  NDPKEDTSPW----ASDSDWEEVPVEQNTSVSKLEA--NLSNQHIPKDISIAEGVAWEEY 650

Query: 3476 GCASISKDVSPPPAECSESLSRGALEEEAEYQEAIRRSLVDLKGSGDSNASCENLKSGDA 3297
             C + +  V     +    +++G LEEEA+ QEAI++SL++L           + +SGD 
Sbjct: 651  SCKNANNSVEN---DTVTKITKGYLEEEADLQEAIKKSLLEL----------HDKESGDV 697

Query: 3296 GLIDNLGESSSIINEYSIPESSIPVKDNVKSCKSSFETQTNKMIDNQVKLDMPQHSNNSE 3117
                 L E+ S+     + +   P +D++ S ++  E +  + +D    L      +   
Sbjct: 698  -----LEENQSVRVNLVVDK---PSEDSLCSRETVGEAEEERFLDEITILKTSGAISEQS 749

Query: 3116 TQSTPRLGVDLVGLELSPGDAPGRCSNSVQDK-TNDLRTQEEIIERVKNCNPEKDILIQE 2940
              S         G+    G  P   SN+V    +N L   + +I      +PEK + +  
Sbjct: 750  NTSVAGNADGQKGITKQFGTHPSSGSNNVSHAVSNKLSKVKSVI------SPEKALNVAS 803

Query: 2939 QQGDI----KSSKVXXXXXXXXXXXXXXXTPYT---LSGDLHTFTHVD-EPHLELEAKVD 2784
            Q   +    K                    P     ++G L    + D E  + ++ K D
Sbjct: 804  QNRMLSTMAKQHNEEGSESFGGESVKVSAMPIADEEITGFLDEKDNADGESSIMMDDKRD 863

Query: 2783 --DRLHESLISESSSFADVENKS------DVENKSDFEPKSSPGHNVLHFEK----EKYG 2640
               R  +SL++ES   +    +S      D +++++   +++   +  + +     E+ G
Sbjct: 864  YSRRKIQSLVTESRDPSRNVVRSRIGILHDTDSQNERREENNSNEHTFNIDSSTDFEEKG 923

Query: 2639 GNSSFIENMVEQVPXXXXXXXXXXXXXXXXXXXLGNEQRRLERNAESVSGEMFAECQELL 2460
                F E  +E+                     LG+EQR+LERNAESVS EMFAECQELL
Sbjct: 924  VPVEFSEANIEE----------EIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELL 973

Query: 2459 QMFGLPYIIAPMEAEAQCAFMELANLVDGVVTDDSDAFLFGARSVYKNIFDDRKYVETYF 2280
            Q+FG+PYIIAPMEAEAQCAFME +NLVDG+VTDDSD FLFGARSVYKNIFDDRKYVETYF
Sbjct: 974  QIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYF 1033

Query: 2279 MKDIESELGLDRDKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLRQFRKWIES 2100
            MKDIE ELGL RDK+IRMA+LLGSDYTEGISGIGIVNAIEVV AFPEEDGL++FR+W+ES
Sbjct: 1034 MKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVES 1093

Query: 2099 PDPSILGKFDVQEGCGSRKRGSKIRENEKNKHGGKLEGSSDCDLNMXXXXXXXXXXKQIF 1920
            PDP+ILGK D + G   +KRGS   +N+     G + G+S  D             KQIF
Sbjct: 1094 PDPTILGKTDAKTGSKVKKRGSASVDNK-----GIISGASTDDTE---------EIKQIF 1139

Query: 1919 MEKHRNVSKNWHIPSTFPSDVVIAAYASPQVDNSTDSFSWGRPDLVTLHKVCWEKFGWGS 1740
            M++HR VSKNWHIP TFPS+ VI+AY +PQVD ST+ FSWG+PDL  L K+CWEKF W  
Sbjct: 1140 MDQHRKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFSWGKPDLSVLRKLCWEKFNWNG 1199

Query: 1739 KKADEVLLPVLKEYDKHETQLRLEAFYTFNEKFAKIRSKRIKSALKGVRGNKSEDVMNDS 1560
            KK DE+LLPVLKEY+K ETQLR+EAFY+FNE+FAKIRSKRI  A+KG+ G  S DV + +
Sbjct: 1200 KKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKIRSKRINKAVKGIGGGLSSDVADHT 1259

Query: 1559 -GEGDSKNRKRRKANYVEAKTNEVEKDSGLRDHGVIKQKIAKILKPKQSRGRNSQGEAVE 1383
              EG  K  K++ A +     N  +KDS + +  V K K  ++ KP  SRGR    +   
Sbjct: 1260 LQEGPRKRNKKKVAPHETEDNNTSDKDSPIANEKV-KNKRKRLEKPSSSRGRGRAQKRGR 1318

Query: 1382 GIDTQPSEEASMTXXXXXXXXXXXXXXXXXXXXXRKKNKINSCLEDVGTSSDGEFNNETE 1203
            G                                   + ++    +D+   SDG  +++ +
Sbjct: 1319 G-----------------------------------RGRVQ---KDLLELSDGSSDDDDD 1340

Query: 1202 ERAPWEFE-RPS---KVRRSERPRKAVNYTISNEDILEECCATT-SKLDGFETSHNKVIG 1038
            +    E E +P+   KVR+S R R  V Y+   +D L+E  +   S  + FE      IG
Sbjct: 1341 DDKVVELEAKPANLQKVRKSTRSRNPVMYSAKEDDELDESRSNEGSPSENFEEVDEGRIG 1400

Query: 1037 NSLSGKXXXXXXXXXXXXXXXXEDFLESGGGFCSEVTEPSQANLGDIGNAVVEDQLSEGY 858
            N  S                  ED++++GGGFC++  +       +IG+A +ED+ ++ Y
Sbjct: 1401 NDDS--------VDASINDCPSEDYIQTGGGFCADEAD-------EIGDAHLEDKATDDY 1445

Query: 857  LKMGGGFCL-EDDAARGNTDEYPGKAAESSQVNSRSDGDPLAEDHIS 720
              +GGGFC+ ED+ A  NT +   +  +      R  G    E+  S
Sbjct: 1446 RVIGGGFCVDEDETAEENTMDDDAEILKMESEEQRKKGKRRNEEDAS 1492