BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00007340
         (3940 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...  1530   0.0  
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...  1488   0.0  
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...  1434   0.0  
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...  1412   0.0  
ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1403   0.0  

>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score = 1530 bits (3962), Expect = 0.0
 Identities = 754/1120 (67%), Positives = 900/1120 (80%), Gaps = 3/1120 (0%)
 Frame = -1

Query: 3712 TLTVRVTNIPQTIVANDLCAFFESLIGISSVYACEIFTEHKDWKPKSHGRLQFETLDQKT 3533
            T TVRV+NIPQT +A  L  FFES IG  SV+AC+IF+EHK+WK + HGR+QFET   K 
Sbjct: 8    TATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKL 67

Query: 3532 LALNLSQQGNIIFKGSIISLSPSLNDIISRPVNPNNRLHHVSANSVLYTGFMIKDDCMCV 3353
             +L+LS+QG ++FKG  + L+ S +DII+RP+  N R        +L+TG ++++D M V
Sbjct: 68   QSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQ----KGILHTGILLENDYMEV 123

Query: 3352 LESWDSVKTWVFPERERIEFWFDH-KRECYKLEFQFSDIFETCRCFFEGGKPNALLLKLK 3176
            LE+W++VKT + PER+ +EFW  H K ECY+LE QF DI ETC C  E  K  ALLLKLK
Sbjct: 124  LETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEK-TALLLKLK 182

Query: 3175 HAPKVYQKVSGSNVASKFSGNCSNRYHFCKEDFEFAWIRTTDFSRLNYIGHSSSLCLELD 2996
            HAPK+YQ+VSG  VASKFS   S+RYH C+ED EF W+RTTDFS +  IG SSS C E++
Sbjct: 183  HAPKLYQRVSGPGVASKFS---SDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIE 239

Query: 2995 DKYLDLDVFDSLPFYERELIELTFDDRDEFCSASELVPLVNCRSDVKVAYEVLFQLNSLV 2816
            D  L  D+   LP+   ++++L  D+  +  SASELVPL +  SD+K+ YE+LFQLNSL+
Sbjct: 240  DGLLSSDLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLI 299

Query: 2815 HTHKISLAAIDQSFMEDISKLSVDTTLLVLQKMHKLQSTCYDPWAFIKMRLHVLGEHEKN 2636
            HTHKISL A+    +E +SKL +DT +++LQKMHKLQSTC++P  FIK RLHVLG++ KN
Sbjct: 300  HTHKISLGAVKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKN 359

Query: 2635 L--SSYDRLINQNIMSCHRVLITPTKIYCLGPELEASNYIVKNFAEYASDFIRVTFVEED 2462
               SSY RL+NQN+MS HRVL+TP+K+YCLGPELE SNYIVKNFA +ASDF+RVTFVEED
Sbjct: 360  QPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEED 419

Query: 2461 WSKLPANAVSSFVERGFFAKPYKTKIYHRILSVLRDGIPIGDKRFFFLAFSASQLRSNSV 2282
            W KL  NA+S  VE+G FAKPY+TKIYHRILS+LRDG+ IG KRF FLAFSASQLRSNSV
Sbjct: 420  WGKLSPNAISMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSV 479

Query: 2281 WMFSSNENVKVEDIRNWMGCFNKIRSVSKCAARMGQLFSASKQTYEVLPQHVELIQDIEV 2102
            WMF+SNE+VK EDIR WMGCFNKIRSVSKCAARMGQLFS S QT EV   HVE++ DIEV
Sbjct: 480  WMFASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEV 539

Query: 2101 TSDGVDYCFSDGIGKISQFFARQVAQKCGLQHTPSAFQIRYGGYKGVIAVDRNSYWKLSL 1922
            TSDGV YCFSDGIGKISQ FA QVAQKCGL +TPSAFQIRYGGYKGVIAVDRNS+ KLSL
Sbjct: 540  TSDGVSYCFSDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRKLSL 599

Query: 1921 RSSMLKFESKNCMLNVTKCCESQPCYLNREIISLLSTLGVDDEAFLALQDNQLKMLDKML 1742
            R SMLKFESKN MLN+TK  ++ PCYLNREI+ LLSTLGV+D+ F  L DN L +L KML
Sbjct: 600  RGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKML 659

Query: 1741 TEKESALQVLESMGMNDTKSILAKMLGQGYEPSLEPYLSMMLRSHRENQVSDLRSRCRVF 1562
            T  E+AL VLES+G  D K IL +ML QGY P+LEPYLSMML+SH ENQ+SDLRSRCR+F
Sbjct: 660  TTNEAALDVLESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIF 719

Query: 1561 VQKGRVLLGCLDETGVLDYGQVYVRITLTRAELHCADQVFFRKVDDTTCIVIGKVLVTKN 1382
            + KGRVL+GCLDETG+L+YGQVY RIT+T+AEL  A Q FF+KVD+TT +V G V+VTKN
Sbjct: 720  IHKGRVLVGCLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKN 779

Query: 1381 PCLHPGDVRVLEAVYEVTLEEKGIVDCVIFPQKGARPHPNECSGGDLDGDLYFISWDKTL 1202
            PCLHPGDVRVLEAVYEV LEEK  VDC+IFPQKG RPHPNECSGGDLDGDLYFISWD+ L
Sbjct: 780  PCLHPGDVRVLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENL 839

Query: 1201 IPQQTVAPMDYTGRQSHKMDHDVTQEEIHKFFVDYMINDTLGAISTAHLVHADRELEKAL 1022
            IP+QTV PMDYTGR++  MDH+VT +EI +FFVDYMI+DTLGAISTAHLVHADRE +KAL
Sbjct: 840  IPRQTVTPMDYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKAL 899

Query: 1021 SKKCLELATLHSMAVDFAKTGAPAEMPRYLKPREYPDFMQRWDKPMYISQGVLGKLYHAT 842
            + KCL+LATLHSMAVDFAKTGA AEMPR+LKPRE+PDF++RWDKPMYIS+GVLGKLY A 
Sbjct: 900  NPKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAI 959

Query: 841  IESNVHGKSNLSLPEKVIQEAYDQDLVVDGFEAFLEMAFNHKAMYLDKIDTLLKFYGGGT 662
            + S+V   S+     + IQ+AYD  L+ DG+EAF+E A NHK  YLD++++LL +YG   
Sbjct: 960  VNSSVRSNSDDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEK 1019

Query: 661  EDEILTGNLWHKSVYLQRDNRRYGEVKDRILVSAKNLYKEAKGWFNSSCTGADNCQKLAS 482
            E EILTGNL  KSVYLQRDNRRY E+KDRILVSAK+L KE KGWF + C   D  +KLAS
Sbjct: 1020 EVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWF-TGCCKEDEHKKLAS 1078

Query: 481  AWYHVAYHPTYCHEKSNCLGFPWIVGDTLLAIKSARSKRL 362
            AWYHV YHP+YC   +NCLGFPW+VGD LL IK   ++++
Sbjct: 1079 AWYHVTYHPSYCEGSANCLGFPWVVGDILLDIKLHNTRKI 1118


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score = 1488 bits (3852), Expect = 0.0
 Identities = 736/1116 (65%), Positives = 893/1116 (80%), Gaps = 2/1116 (0%)
 Frame = -1

Query: 3706 TVRVTNIPQTIVANDLCAFFESLIGISSVYACEIFTEHKDWKPKSHGRLQFETLDQKTLA 3527
            TV+V+NIP+T +A +L +F ES +G +++YA EI TEHK+WK +  GR+QFETL  K  A
Sbjct: 8    TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67

Query: 3526 LNLSQQGNIIFKGSIISLSPSLNDIISRPVNPNNRLHHVSANSVLYTGFMIKDDCMCVLE 3347
              LS QG+++F+GS +S+S + +DII RPV P N++     + VL+ GF+++DDCM VLE
Sbjct: 68   DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVD----SGVLHVGFLVEDDCMLVLE 123

Query: 3346 SWDSVKTWVFPERERIEFWFDHKRECYKLEFQFSDIFETCRCFFEGGKPNALLLKLKHAP 3167
            SW+ VKT V PER R+EFW D   E YKLE  F D+ E+  C   GGK NALLLKLK+AP
Sbjct: 124  SWEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAP 183

Query: 3166 KVYQKVSGSNVASKFSGNCSNRYHFCKEDFEFAWIRTTDFSRLNYIGHSSSLCLELDDKY 2987
            K++QK +G N+ASKFS   ++RYH  KED EF W+RTTDFS +  +G S+S C E+ + +
Sbjct: 184  KIFQKFAGPNIASKFS---ADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGF 240

Query: 2986 LDLDVFDSLPFYERELIELTFDDRDEFCSASELVPLVNCRSDVKVAYEVLFQLNSLVHTH 2807
              LD+F S P+Y ++L ELT +  + FCS S LVPLV C S  K+AYE+LFQLNSLVH  
Sbjct: 241  PALDIFASFPYY-KDLTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQ 299

Query: 2806 KISLAAIDQSFMEDISKLSVDTTLLVLQKMHKLQSTCYDPWAFIKMRLHVLGEHEKNL-- 2633
            KISLAA+D   +E +S L VDT +++LQK+HK +ST YDP +FIK + H++  + KNL  
Sbjct: 300  KISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPP 359

Query: 2632 SSYDRLINQNIMSCHRVLITPTKIYCLGPELEASNYIVKNFAEYASDFIRVTFVEEDWSK 2453
            SS+ RL N N+MSCHRVL+TP+KIYCLGPELE+SNY+VK++A YASDF+RV+FVEEDWSK
Sbjct: 360  SSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSK 419

Query: 2452 LPANAVSSFVERGFFAKPYKTKIYHRILSVLRDGIPIGDKRFFFLAFSASQLRSNSVWMF 2273
            LP+NA+S  + + FFA P++T+IYHRILS+LR+GI IG KRF FLAFSASQLRSNSVWMF
Sbjct: 420  LPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMF 479

Query: 2272 SSNENVKVEDIRNWMGCFNKIRSVSKCAARMGQLFSASKQTYEVLPQHVELIQDIEVTSD 2093
            +SN+ V+V+DIR WMGCF KIRSVSKCAARMGQLFS+S QT  V  Q VE+I DIEVTSD
Sbjct: 480  ASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSD 539

Query: 2092 GVDYCFSDGIGKISQFFARQVAQKCGLQHTPSAFQIRYGGYKGVIAVDRNSYWKLSLRSS 1913
            G  YCFSDGIGKIS  FA+QVAQKCGL  TPSAFQIRYGGYKGVIAVDRNS+ KLSLRSS
Sbjct: 540  GFGYCFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSS 599

Query: 1912 MLKFESKNCMLNVTKCCESQPCYLNREIISLLSTLGVDDEAFLALQDNQLKMLDKMLTEK 1733
            MLKFES+N MLNVTK  ES PCYLNREI+SLLSTLGV+DE F AL + Q+ +LDKMLT +
Sbjct: 600  MLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNR 659

Query: 1732 ESALQVLESMGMNDTKSILAKMLGQGYEPSLEPYLSMMLRSHRENQVSDLRSRCRVFVQK 1553
            ++AL VLESMG  D K+ILAKML QGYEP++EPYLSMML+++RE+Q+SD+R+RCR+FV K
Sbjct: 660  QAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPK 719

Query: 1552 GRVLLGCLDETGVLDYGQVYVRITLTRAELHCADQVFFRKVDDTTCIVIGKVLVTKNPCL 1373
             RVL+GCLDETG+L+YGQVYVR+T+T+AE  C +Q FF+KVDDTT +VIGKV+VTKNPCL
Sbjct: 720  ARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCL 779

Query: 1372 HPGDVRVLEAVYEVTLEEKGIVDCVIFPQKGARPHPNECSGGDLDGDLYFISWDKTLIPQ 1193
            HPGD+RVL+AVYEV LEEKG+VDC++FPQKG RPHPNECSGGDLDGD +FI WD+ LIP 
Sbjct: 780  HPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPS 839

Query: 1192 QTVAPMDYTGRQSHKMDHDVTQEEIHKFFVDYMINDTLGAISTAHLVHADRELEKALSKK 1013
            QT APMDYT R+   MDHDVT EEI KFFVDYMINDTLG ISTAHLVHADRE EKA SKK
Sbjct: 840  QTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKK 899

Query: 1012 CLELATLHSMAVDFAKTGAPAEMPRYLKPREYPDFMQRWDKPMYISQGVLGKLYHATIES 833
            CLELATLHSMAVDFAKTGAPAEMPR LKP+E+PDFM+R DKPMYIS G LGKLY ATI S
Sbjct: 900  CLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIAS 959

Query: 832  NVHGKSNLSLPEKVIQEAYDQDLVVDGFEAFLEMAFNHKAMYLDKIDTLLKFYGGGTEDE 653
             V+ KS+      +   AYD DL VDGFE FLE+A  HK MY +K+ TL+ FYG  +EDE
Sbjct: 960  RVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDE 1019

Query: 652  ILTGNLWHKSVYLQRDNRRYGEVKDRILVSAKNLYKEAKGWFNSSCTGADNCQKLASAWY 473
            +LTGNL +K +YLQRDNRR+ E+KDRIL+S K+L KEAK W   SC    + QK+ASAWY
Sbjct: 1020 MLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQH-QKMASAWY 1078

Query: 472  HVAYHPTYCHEKSNCLGFPWIVGDTLLAIKSARSKR 365
            HV YH T+  +  N L FPWIVG+ LL IKSA S++
Sbjct: 1079 HVTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSRK 1114


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score = 1434 bits (3713), Expect = 0.0
 Identities = 715/1123 (63%), Positives = 866/1123 (77%), Gaps = 2/1123 (0%)
 Frame = -1

Query: 3730 MEDTPTTLTVRVTNIPQTIVANDLCAFFESLIGISSVYACEIFTEHKDWKPKSHGRLQFE 3551
            ME      +VRVTNIPQTI A ++  +  + +G  SV+A EI T  K+W  +  GR+QF 
Sbjct: 1    MEVVAERPSVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFS 60

Query: 3550 TLDQKTLALNLSQQGNIIFKGSIISLSPSLNDIISRPVNPNNRLHHVSANSVLYTGFMIK 3371
            +L+ K  AL+LS +  ++ K   + LS + +DII RPV   NR+     N VLY GFM K
Sbjct: 61   SLEVKHEALSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRME----NGVLYVGFMKK 116

Query: 3370 DDCMCVLESWDSVKTWVFPERERIEFWFDHKREC-YKLEFQFSDIFETCRCFFEGGKPNA 3194
            +  +CVLE W+ V+ W  PER RIEFW    +E  YKL  +F DI E      +G K NA
Sbjct: 117  ETTLCVLEYWEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNA 176

Query: 3193 LLLKLKHAPKVYQKVSGSNVASKFSGNCSNRYHFCKEDFEFAWIRTTDFSRLNYIGHSSS 3014
            ++LKL++ P++YQK+SG  +ASKFS   +NRY +CKEDF+F W+RTTD S +  IG S+S
Sbjct: 177  VVLKLRYGPRIYQKISGPGIASKFS---TNRYFYCKEDFDFLWVRTTDISAIKSIGQSTS 233

Query: 3013 LCLELDDKYLDLDVFDSLPFYERELIELTFDDRDEFCSASELVPLVNCRSDVKVAYEVLF 2834
             C E+ +     D F + P+Y+ ++  L  +D +EFCSASE VPL+ C SD K+AYEVLF
Sbjct: 234  FCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLF 292

Query: 2833 QLNSLVHTHKISLAAIDQSFMEDISKLSVDTTLLVLQKMHKLQSTCYDPWAFIKMRLHVL 2654
            QLNSLVHT KISLAA+D   ++ +  L+V+T +++LQK+HKL+ TCYDP +F+K  L   
Sbjct: 293  QLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLR-- 350

Query: 2653 GEHEKNLSSYDR-LINQNIMSCHRVLITPTKIYCLGPELEASNYIVKNFAEYASDFIRVT 2477
                ++LSS  + L   NIMSCHR LITP+KI+CLGPE E SNY+VK+FA+YASDFIRVT
Sbjct: 351  ----ESLSSPPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVT 406

Query: 2476 FVEEDWSKLPANAVSSFVERGFFAKPYKTKIYHRILSVLRDGIPIGDKRFFFLAFSASQL 2297
            FVEEDWSKLPANA+S+ ++RG FAKP++T IYHRILS+LRDG  IG KRF FLAFSASQL
Sbjct: 407  FVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQL 466

Query: 2296 RSNSVWMFSSNENVKVEDIRNWMGCFNKIRSVSKCAARMGQLFSASKQTYEVLPQHVELI 2117
            RSNSVWMF+SN  VK EDIR WMGCF+KIRSVSKCAARMGQLFS+S QT+ V  Q VE+I
Sbjct: 467  RSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEII 526

Query: 2116 QDIEVTSDGVDYCFSDGIGKISQFFARQVAQKCGLQHTPSAFQIRYGGYKGVIAVDRNSY 1937
             DIEVT+DG+DYCFSDGIGKIS  FA+QVA KCGL HTPSAFQIRYGGYKGV+AVDRNS+
Sbjct: 527  PDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSF 586

Query: 1936 WKLSLRSSMLKFESKNCMLNVTKCCESQPCYLNREIISLLSTLGVDDEAFLALQDNQLKM 1757
             KLSLRSSMLKF+S+N MLNVTK  ES PCYLNREIISLLSTLGV DE F ALQ  QL  
Sbjct: 587  RKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYR 646

Query: 1756 LDKMLTEKESALQVLESMGMNDTKSILAKMLGQGYEPSLEPYLSMMLRSHRENQVSDLRS 1577
            L KMLT KESAL VLE++   D+K+IL +ML QGYEP++EPYLSMML+++ EN + +LRS
Sbjct: 647  LRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRS 706

Query: 1576 RCRVFVQKGRVLLGCLDETGVLDYGQVYVRITLTRAELHCADQVFFRKVDDTTCIVIGKV 1397
            RCR+FV KGR+L+GCLDE+G+LDYGQVYVRIT+T+AEL C DQ FFRKVD++T  +IG+V
Sbjct: 707  RCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEV 766

Query: 1396 LVTKNPCLHPGDVRVLEAVYEVTLEEKGIVDCVIFPQKGARPHPNECSGGDLDGDLYFIS 1217
             VTKNPCLHPGD+RVLEAVY+V LEEKG+VDC+IFPQ G RPHPNECSGGDLDGD +FIS
Sbjct: 767  AVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFIS 826

Query: 1216 WDKTLIPQQTVAPMDYTGRQSHKMDHDVTQEEIHKFFVDYMINDTLGAISTAHLVHADRE 1037
            WD+ L+P  T APMDY G +   MDH+VT EEI +FFVDYMINDTLGAISTAHLVHAD E
Sbjct: 827  WDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCE 886

Query: 1036 LEKALSKKCLELATLHSMAVDFAKTGAPAEMPRYLKPREYPDFMQRWDKPMYISQGVLGK 857
             +KA S+KCL+LATLHSMAVDFAKTGAPAEMP YLKPRE+PDFM+R +K MYIS GVLGK
Sbjct: 887  PDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGK 946

Query: 856  LYHATIESNVHGKSNLSLPEKVIQEAYDQDLVVDGFEAFLEMAFNHKAMYLDKIDTLLKF 677
            LY    +S    +SN    +K+ +  YDQDL V GFE FL +A  +K  Y++K+ TL+ +
Sbjct: 947  LYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDY 1006

Query: 676  YGGGTEDEILTGNLWHKSVYLQRDNRRYGEVKDRILVSAKNLYKEAKGWFNSSCTGADNC 497
            YG  TEDEILTGNL H+  YLQRDNR+YG+VKDRILVS KNL KEAK WF SSC   ++ 
Sbjct: 1007 YGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEH- 1065

Query: 496  QKLASAWYHVAYHPTYCHEKSNCLGFPWIVGDTLLAIKSARSK 368
            Q +ASAWYHV YHPTY HE+ NCL FPWIVGD LL IKS  S+
Sbjct: 1066 QCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILLNIKSLNSR 1108


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score = 1412 bits (3656), Expect = 0.0
 Identities = 701/1119 (62%), Positives = 869/1119 (77%), Gaps = 7/1119 (0%)
 Frame = -1

Query: 3712 TLTVRVTNIPQTIVANDLCAFFESLIGISSVYACEIFTEHKDWKPKSHGRLQFETLDQKT 3533
            T TVRVTNIP T  ANDL  + E+ +G SSV+A EIF+++ +WK +  GR+QFETL+ K+
Sbjct: 8    TPTVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKS 67

Query: 3532 LALNLSQQGNIIFKGSIISLSPSLNDIISRPVNPNNRLHHVSANSVLYTGFMIKDDCMCV 3353
             AL L++   ++     + L  S +DII RP  P NR++    N  LY GF I  DCM V
Sbjct: 68   KALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRIN----NGALYAGFPIGPDCMSV 123

Query: 3352 LESWDSVKTWVFPERERIEFWFDHKRECYKLEFQFSDIFETCR-CFFEGGKPNALLLKLK 3176
            L+SW+ V+ WV PER+R++FW  H  +C+KLE  F +I E    C  EG KPNALLLKL+
Sbjct: 124  LQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLR 183

Query: 3175 HAPKVYQKVSGSNVASKFSGNCSNRYHFCKEDFEFAWIRTTDFSRLNYIGHSSSLCLELD 2996
            + P++YQK++G NVA+KF     +RY FCKE+FEF W+RTTDFS L  IGHS+S   E+ 
Sbjct: 184  YGPRIYQKMAGPNVAAKFK---DDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIV 240

Query: 2995 DKYLDLDVFDSLPFYERELIELTFDDRDEFCSASELVPLVNCRSDVKVAYEVLFQLNSLV 2816
            ++  D DVF S P Y   L +L+ +D ++FCS +E VPLV CR D K+ YE LFQLNSLV
Sbjct: 241  EESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLV 300

Query: 2815 HTHKISLAAIDQSFMEDISKLSVDTTLLVLQKMHKLQSTCYDPWAFIKMRLHVLGEHEKN 2636
            HT KISLA+++   ++ ++ L  +T  ++ QK+HK+ STCY+P  +++ +LHVL   +K+
Sbjct: 301  HTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKS 360

Query: 2635 L--SSYDRLINQNIMSCHRVLITPTKIYCLGPELEASNYIVKNFAEYASDFIRVTFVEED 2462
            +  S   RL++ NIMSCHR LITP+KIYCLGPELE SN++VK+FA YASDF+R+TFVEED
Sbjct: 361  VLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEED 420

Query: 2461 WSKLPANAVSSFVERGFFAKPYKTKIYHRILSVLRDGIPIGDKRFFFLAFSASQLRSNSV 2282
            WSKLP NA+S  +++G F++P +T+IY R+L++LRDGI IG KRF FLAFSASQLRSNSV
Sbjct: 421  WSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSV 480

Query: 2281 WMFSSNENVKVEDIRNWMGCFNKIRSVSKCAARMGQLFSASKQTYEVLPQHVELIQDIEV 2102
            W+F+SN+ VK  DIR WMG FN IRSVSKCAARMGQLFS+S+QT+E+ PQ V+LI DIE+
Sbjct: 481  WLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEI 540

Query: 2101 TSDGVDYCFSDGIGKISQFFARQVAQKCGLQHT--PSAFQIRYGGYKGVIAVDRNSYWKL 1928
            TSDG+DYCFSDGIGKISQ FARQ+A+K  L     PSAFQIRYGGYKGVIAVDR+S+ KL
Sbjct: 541  TSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKL 600

Query: 1927 SLRSSMLKFESKNCMLNVTKCCESQPCYLNREIISLLSTLGVDDEAFLALQDNQLKMLDK 1748
            SLR SMLKFESKN ML VTK  ES PC+LNREIISLLSTLG+ DEA LALQ++QL++L K
Sbjct: 601  SLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGK 660

Query: 1747 MLTEKESALQVLESMGMNDTKSILAKMLGQGYEPSLEPYLSMMLRSHRENQVSDLRSRCR 1568
            MLT+KE+AL VLES+   D+ SIL KML + YEP+ EPYLSMML++H   Q+SDL+SRCR
Sbjct: 661  MLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCR 720

Query: 1567 VFVQKGRVLLGCLDETGVLDYGQVYVRITLTRAELHCADQVFFRKVD--DTTCIVIGKVL 1394
            +FV KGRVL+GCLDETG+L+YGQV+VRIT+ + +    D+   R VD  D+T I++GKV+
Sbjct: 721  IFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENL-RNVDGDDSTRIIVGKVV 779

Query: 1393 VTKNPCLHPGDVRVLEAVYEVTLEEKGIVDCVIFPQKGARPHPNECSGGDLDGDLYFISW 1214
            VTKNPCLHPGD+RVL+AVY   LEEKG+ DC++FPQKG RPHPNECSGGDLDGDL+FISW
Sbjct: 780  VTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISW 839

Query: 1213 DKTLIPQQTVAPMDYTGRQSHKMDHDVTQEEIHKFFVDYMINDTLGAISTAHLVHADREL 1034
            DK LIP QT  PMDYTGR+   MDH VT EEIH+FFVDYMINDTLGAISTAHLVHADRE 
Sbjct: 840  DKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREH 899

Query: 1033 EKALSKKCLELATLHSMAVDFAKTGAPAEMPRYLKPREYPDFMQRWDKPMYISQGVLGKL 854
            +KA S+KCLELA LHSMAVDFAKTGAPAEMPR LKPRE+PDFM+R++KPMYIS+GVLGKL
Sbjct: 900  DKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKL 959

Query: 853  YHATIESNVHGKSNLSLPEKVIQEAYDQDLVVDGFEAFLEMAFNHKAMYLDKIDTLLKFY 674
            Y ATI+SN+  + ++ + EK  +EAYD  L VDGFE FLE A +H+ MY  K+ +L+ FY
Sbjct: 960  YRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFY 1019

Query: 673  GGGTEDEILTGNLWHKSVYLQRDNRRYGEVKDRILVSAKNLYKEAKGWFNSSCTGADNCQ 494
            G  TEDE+LTGNL +++ YLQRDNRRYG++KDRIL+S K+L  EAK WF S C      Q
Sbjct: 1020 GATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQ-PHEYQ 1078

Query: 493  KLASAWYHVAYHPTYCHEKSNCLGFPWIVGDTLLAIKSA 377
             +ASAWYHV YHP Y  E S  L FPWIVGD LL IKSA
Sbjct: 1079 LMASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSA 1117



 Score =  164 bits (414), Expect = 2e-37
 Identities = 80/110 (72%), Positives = 92/110 (83%)
 Frame = -1

Query: 1141 HDVTQEEIHKFFVDYMINDTLGAISTAHLVHADRELEKALSKKCLELATLHSMAVDFAKT 962
            H  +  +IHKFFVDYMI DTLGAISTAHLVHAD E  KA S+KCLELA LHSMAVDFAKT
Sbjct: 1113 HIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKT 1172

Query: 961  GAPAEMPRYLKPREYPDFMQRWDKPMYISQGVLGKLYHATIESNVHGKSN 812
            GA AEMPR LKP+E+PDFM+R++KPMY+S+GVLGKLY A +ES +   SN
Sbjct: 1173 GALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVESTMQLTSN 1222



 Score = 72.8 bits (177), Expect = 7e-10
 Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
 Frame = -1

Query: 718  KAMYLDKIDTLLKFYGGGTEDEI-LTGNLWHKSVYLQRDNRRYGEVKDRILVSAK--NLY 548
            K MY+ K   L K Y    E  + LT N      +L          K  ++++ K  +L 
Sbjct: 1196 KPMYVSK-GVLGKLYRALVESTMQLTSNFVSSGNFLS---------KKHMIINLKLMDLQ 1245

Query: 547  KEAKGWFNSSCTGADNCQKLASAWYHVAYHPTYCHEKSNCLGFPWIVGDTLLAIKSARS 371
             E K WF S C   ++ Q +ASAWYHV +HP Y H+ SN + FPWIVGD LL +K A +
Sbjct: 1246 LEVKEWFESDCQPHEH-QLMASAWYHVIHHPKYYHKSSNFVSFPWIVGDILLYVKHANT 1303


>ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score = 1403 bits (3632), Expect = 0.0
 Identities = 693/1120 (61%), Positives = 861/1120 (76%), Gaps = 2/1120 (0%)
 Frame = -1

Query: 3718 PTTLTVRVTNIPQTIVANDLCAFFESLIGISSVYACEIFTEHKDWKPKSHGRLQFETLDQ 3539
            P   T+RV+N+P++ +A DL  F  S +G  SV+A EIFTE K+WK +  GR+QF TL+ 
Sbjct: 4    PERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEA 63

Query: 3538 KTLALNLSQQGNIIFKGSIISLSPSLNDIISRPVNPNNRLHHVSANSVLYTGFMIKDDCM 3359
            K  A++LS Q +++F    +  S   +DI+ RPV+  NR    + N VL+ GFM+K++ M
Sbjct: 64   KAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNR----TENGVLHVGFMLKEERM 119

Query: 3358 CVLESWDSVKTWVFPERERIEFWFDHKRECYKLEFQFSDIFETCRCFFEGGKPNALLLKL 3179
             VLESW+ VK W+ PER RIEFW  H++ECYKLE  F +I ET        K NALLLKL
Sbjct: 120  SVLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKL 179

Query: 3178 KHAPKVYQKVSGSNVASKFSGNCSNRYHFCKEDFEFAWIRTTDFSRLNYIGHSSSLCLEL 2999
            K+AP++Y+K+SGSN+AS+FS   S RY  C ED+++ W+RTT+FS +  +G S+S C E+
Sbjct: 180  KYAPRIYKKISGSNMASRFS---STRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEV 236

Query: 2998 DDKYLDLDVFDSLPFYERELIELTFDDRDEFCSASELVPLVNCRSDVKVAYEVLFQLNSL 2819
            ++     D+F   PFY+    ++  +D +EFCS SE+VPL+       +AYEV +QLNSL
Sbjct: 237  EEDLQASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSL 296

Query: 2818 VHTHKISLAAIDQSFMEDISKLSVDTTLLVLQKMHKLQSTCYDPWAFIKMRLHVLGEHEK 2639
            VH  KISL+A +Q  ++ +  L +DT L VLQ++H+L+  CYDP +F+K +LHV   + K
Sbjct: 297  VHMQKISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCK 356

Query: 2638 NL--SSYDRLINQNIMSCHRVLITPTKIYCLGPELEASNYIVKNFAEYASDFIRVTFVEE 2465
            +L  SS  RL N N+M+C+RVL+TP++IYCLGPELE SNY+VKNF+ YASDF+RVTFVEE
Sbjct: 357  SLPPSSQKRLSN-NVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEE 415

Query: 2464 DWSKLPANAVSSFVERGFFAKPYKTKIYHRILSVLRDGIPIGDKRFFFLAFSASQLRSNS 2285
            DWSKLPA AV++ ++RG  +KPY+T+IYHRI++VLRDGI IG KRF FLAFSASQLRSNS
Sbjct: 416  DWSKLPAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNS 475

Query: 2284 VWMFSSNENVKVEDIRNWMGCFNKIRSVSKCAARMGQLFSASKQTYEVLPQHVELIQDIE 2105
            VWMF+S++N+K E+IR WMGCF KIRS+SKCAARMGQLFS+S QT  V  + VE+I DIE
Sbjct: 476  VWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIE 535

Query: 2104 VTSDGVDYCFSDGIGKISQFFARQVAQKCGLQHTPSAFQIRYGGYKGVIAVDRNSYWKLS 1925
            V +DG+DYCFSDGIGKIS  FARQVA KCG+ H PSAFQIRYGGYKGVIAVDRNS+ KLS
Sbjct: 536  VNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLS 595

Query: 1924 LRSSMLKFESKNCMLNVTKCCESQPCYLNREIISLLSTLGVDDEAFLALQDNQLKMLDKM 1745
            LR SMLKFESKN MLNVTKCC+S PCYLNREI +LLSTLGV DE+F ALQ  QL +L +M
Sbjct: 596  LRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRM 655

Query: 1744 LTEKESALQVLESMGMNDTKSILAKMLGQGYEPSLEPYLSMMLRSHRENQVSDLRSRCRV 1565
            LT+K+ AL VLE+    D+ +IL +ML  GYEP++EPYLSMML++H  N  SDLRSRCR+
Sbjct: 656  LTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRI 715

Query: 1564 FVQKGRVLLGCLDETGVLDYGQVYVRITLTRAELHCADQVFFRKVDDTTCIVIGKVLVTK 1385
            FV KGR+LLGCLDETG+L+YGQVY  ITLT++EL   +Q +F  +D+T  I++GKV+VTK
Sbjct: 716  FVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILLGKVVVTK 775

Query: 1384 NPCLHPGDVRVLEAVYEVTLEEKGIVDCVIFPQKGARPHPNECSGGDLDGDLYFISWDKT 1205
            NPCLHPGDVRVLEA++ V LEEKG+VDC+IFPQKGARPH NECSGGDLDGDLYFISWD+ 
Sbjct: 776  NPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDEN 835

Query: 1204 LIPQQTVAPMDYTGRQSHKMDHDVTQEEIHKFFVDYMINDTLGAISTAHLVHADRELEKA 1025
            LIP +T APMDYTGR+   MDHDV  EEI KFFVDYMINDTLGAISTAHLVHADRE +KA
Sbjct: 836  LIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKA 895

Query: 1024 LSKKCLELATLHSMAVDFAKTGAPAEMPRYLKPREYPDFMQRWDKPMYISQGVLGKLYHA 845
            LS KCLELA LHSMAVDFAKTGAPAEMPR LKPRE+PDFM+R+DKPMYIS  VLGKLY A
Sbjct: 896  LSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRA 955

Query: 844  TIESNVHGKSNLSLPEKVIQEAYDQDLVVDGFEAFLEMAFNHKAMYLDKIDTLLKFYGGG 665
             ++S    +S L   E+  +  YD DL VDGFEAFLE+A  +K MY++K+  L+ +YG  
Sbjct: 956  AVKSIEQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAE 1015

Query: 664  TEDEILTGNLWHKSVYLQRDNRRYGEVKDRILVSAKNLYKEAKGWFNSSCTGADNCQKLA 485
             EDEIL G+L  ++ YLQRDNR+YG++KDRIL+S KNL KE K WF +SC    N + +A
Sbjct: 1016 YEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPL-NRRMMA 1074

Query: 484  SAWYHVAYHPTYCHEKSNCLGFPWIVGDTLLAIKSARSKR 365
            SAWYHV YHP+Y  E    L FPW V D LL IK+  SKR
Sbjct: 1075 SAWYHVTYHPSYFKEDMFYLSFPWAVSDVLLNIKAMNSKR 1114