BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00006775
         (942 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   186   5e-45
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   186   9e-45
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]             182   1e-43
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   177   2e-42
emb|CAN82939.1| hypothetical protein VITISV_013126 [Vitis vinifera]   176   5e-42

>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score =  186 bits (473), Expect = 5e-45
 Identities = 115/323 (35%), Positives = 168/323 (52%), Gaps = 11/323 (3%)
 Frame = +3

Query: 3    FVPGRLIQDNIFLAQYLIHHI--DKGKLQGNVILNLDMSKAFDKLSWSFLQKVLRKFGRK 176
            FVPGR+I DN+ +   ++H +     K   ++ +  DMSKA+D++ W FL+KVL++FG  
Sbjct: 435  FVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFG-- 492

Query: 177  FGFSEDWIGRVMACLSNNWFSIIINXXXXXXXXXXXXVRQGDPLSPALFILAEEYLFKGL 356
              F   WI  V+ C+++  +S +IN            +RQGDPLSP LFIL  E L  GL
Sbjct: 493  --FHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVL-SGL 549

Query: 357  ---QQLHHQQPEIAYHSDCSVVVPALGFANDVLIFSTGSKQALTKIMSFLDHYQSVSGQL 527
                Q   Q P +    +   V   L FA+D + FS    ++  K+   L  Y   SGQ 
Sbjct: 550  CTRAQRLRQLPGVRVSINGPRVNHLL-FADDTMFFSKSDPESCNKLSEILSRYGKASGQS 608

Query: 528  INREKSSWITSNKAAPARCSIIQRATGFRKGTMPFKYLGVPIFKGKKQIFLFDDLIEKIR 707
            IN  KSS   S+K   +    ++R    RK     KYLG+P   G+++  +F  +I+KIR
Sbjct: 609  INFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIR 668

Query: 708  GRLHSWSSNFLSFGGRITLLQSVLTTLPTYYIQVIQMPEAVYNKIDKKFNTFLWDGMP-- 881
             + HSW+S FLS  G+  +L++VL ++P Y +   ++P A+  KI      F WD  P  
Sbjct: 669  QKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDV 728

Query: 882  ----WCKWSKVCAPYEEGGLNMR 938
                W  WSK+  P   GGL  R
Sbjct: 729  RKTSWVAWSKLTNPKNAGGLGFR 751


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  186 bits (471), Expect = 9e-45
 Identities = 114/320 (35%), Positives = 170/320 (53%), Gaps = 7/320 (2%)
 Frame = +3

Query: 3    FVPGRLIQDNIFLAQYLIHHIDKGKLQGNVILNLDMSKAFDKLSWSFLQKVLRKFGRKFG 182
            F+PGRL  +N+ LA  L+H  +K  +  + +L +D+ KAFD + W F+   LR       
Sbjct: 456  FMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEK 515

Query: 183  FSEDWIGRVMACLSNNWFSIIINXXXXXXXXXXXXVRQGDPLSPALFILAEEYLFKGLQQ 362
            F+  WI   + CLS   FS+I+N            +RQGDP+SP LF+LA E +F GL Q
Sbjct: 516  FT-CWI---LECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAME-VFSGLLQ 570

Query: 363  LHHQQPEIAYHSDCSVV-VPALGFANDVLIFSTGSKQALTKIMSFLDHYQSVSGQLINRE 539
              +    IAYH   S + +  L FA+DV+IF  G   +L  I+  L+ +   SG L+N  
Sbjct: 571  SRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTN 630

Query: 540  KSSWITSNKAAPARCSIIQRATGFRKGTMPFKYLGVPIFKGKKQIFLFDDLIEKIRGRLH 719
            K+    +  +     S+   + GF+ G++P +YLG+P+   K  I  +  LIEKI  R +
Sbjct: 631  KTQLYHAGLSQSESDSMA--SYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFN 688

Query: 720  SWSSNFLSFGGRITLLQSVLTTLPTYYIQVIQMPEAVYNKIDKKFNTFLWD------GMP 881
            SW    LSF GR+ LL SV++ +  ++I    +P     KI+   + FLW       G+ 
Sbjct: 689  SWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIA 748

Query: 882  WCKWSKVCAPYEEGGLNMRR 941
               WS+VC P  EGG+ +RR
Sbjct: 749  KVAWSQVCLPKAEGGIGLRR 768


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score =  182 bits (461), Expect = 1e-43
 Identities = 107/324 (33%), Positives = 170/324 (52%), Gaps = 12/324 (3%)
 Frame = +3

Query: 3    FVPGRLIQDNIFLAQYLIHHID-----KGKLQGNVILNLDMSKAFDKLSWSFLQKVLRKF 167
            FV GRLI DNI +AQ + H +      KGK      +  DMSKA+D++ W+F++++L+K 
Sbjct: 390  FVEGRLISDNILIAQEMFHGLRTNPSCKGKFMA---IKTDMSKAYDRVEWNFIEELLKKM 446

Query: 168  GRKFGFSEDWIGRVMACLSNNWFSIIINXXXXXXXXXXXXVRQGDPLSPALFILAEEYLF 347
            G    F E WI  +M C++   + +++N            +RQGDPLSP LFIL  E L 
Sbjct: 447  G----FCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLI 502

Query: 348  KGLQQLHHQQPEIAYH-SDCSVVVPALGFANDVLIFSTGSKQALTKIMSFLDHYQSVSGQ 524
              +++   ++       +  S  V  L FAND L F   +K+    I+  L  Y++VSGQ
Sbjct: 503  ANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQ 562

Query: 525  LINREKSSWITSNKAAPARCSIIQRATGFRKGTMPFKYLGVPIFKGKKQIFLFDDLIEKI 704
            +IN  KSS    +K      + I+ A G         YLG+P   G  +  +F  + +++
Sbjct: 563  MINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRL 622

Query: 705  RGRLHSWSSNFLSFGGRITLLQSVLTTLPTYYIQVIQMPEAVYNKIDKKFNTFLWD---- 872
            + R++ WS+ FLS GG+  +++SV+  LPTY +   ++P+ + +K+      F W     
Sbjct: 623  QTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDGE 682

Query: 873  --GMPWCKWSKVCAPYEEGGLNMR 938
              GM W  W+K+C+   +GGL  R
Sbjct: 683  SRGMHWMAWNKLCSSKADGGLGFR 706


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  177 bits (450), Expect = 2e-42
 Identities = 107/321 (33%), Positives = 165/321 (51%), Gaps = 9/321 (2%)
 Frame = +3

Query: 3    FVPGRLIQDNIFLAQYLIHHIDKGKLQGN--VILNLDMSKAFDKLSWSFLQKVLRKFGRK 176
            FV GRLI DNI +AQ + H +       +  + +  DMSKA+D++ W+F++ +LRK G  
Sbjct: 324  FVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMG-- 381

Query: 177  FGFSEDWIGRVMACLSNNWFSIIINXXXXXXXXXXXXVRQGDPLSPALFILAEEYLFKGL 356
              F E WI  +M C++   + ++IN            +RQGDPLSP LFIL  E L   +
Sbjct: 382  --FCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANI 439

Query: 357  QQLHHQQPEIAYH-SDCSVVVPALGFANDVLIFSTGSKQALTKIMSFLDHYQSVSGQLIN 533
            ++   Q        +  S  V  L FA+D L F   +K+    I+  L  Y+SVSGQ IN
Sbjct: 440  RKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQIN 499

Query: 534  REKSSWITSNKAAPARCSIIQRATGFRKGTMPFKYLGVPIFKGKKQIFLFDDLIEKIRGR 713
              KSS    +K   +  + I+   G         YLG+P   G  +  +F  + ++++ R
Sbjct: 500  FSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSR 559

Query: 714  LHSWSSNFLSFGGRITLLQSVLTTLPTYYIQVIQMPEAVYNKIDKKFNTFLWD------G 875
            ++ WS+ FLS GG+  +++SV  TLP Y +   ++P+A+ +K+      F W       G
Sbjct: 560  INGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRG 619

Query: 876  MPWCKWSKVCAPYEEGGLNMR 938
            M W  W K+C+   +GGL  R
Sbjct: 620  MHWMAWDKLCSSKSDGGLGFR 640


>emb|CAN82939.1| hypothetical protein VITISV_013126 [Vitis vinifera]
          Length = 2416

 Score =  176 bits (447), Expect = 5e-42
 Identities = 115/327 (35%), Positives = 169/327 (51%), Gaps = 14/327 (4%)
 Frame = +3

Query: 3    FVPGRLIQDNIFLAQYLIHHIDKGKLQGNVILNLDMSKAFDKLSWSFLQKVLRKFGRKFG 182
            FV GR I D   +A  +I +  K K +G +I  LD+ KA+D L+W FL KVLRK G    
Sbjct: 1226 FVRGRQILDASLVANEVIDYWHKRKEKG-LICKLDIEKAYDSLNWEFLMKVLRKMG---- 1280

Query: 183  FSEDWIGRVMACLSNNWFSIIINXXXXXXXXXXXXVRQGDPLSPALFILAEEYLFKGLQQ 362
            F   W+  +  C+S   FSI+IN            +RQGDPLSP LFIL  E L      
Sbjct: 1281 FGSRWMDWMWWCISTAKFSILINGVPAGFFPNSKGLRQGDPLSPYLFILGMEVL----ST 1336

Query: 363  LHHQQPEIAYHSDC--------SVVVPALGFANDVLIFSTGSKQALTKIMSFLDHYQSVS 518
            L  +  E  + S C         + V  L FA+D +IF    ++ +T +   L  +++ S
Sbjct: 1337 LFRRAGEGGFLSGCRLRGRGGVEMNVSHLLFADDTIIFCKAEREQVTNLSWILAWFEAAS 1396

Query: 519  GQLINREKSSWITSNKAAPARCSIIQRATGFRKGTMPFKYLGVPIFKGKKQIFLFDDLIE 698
            G  IN  KS+ I   +        +    G + G +P  YLG+P+    K    +D + E
Sbjct: 1397 GLRINLAKSALIPVGQVD--ELEELAAELGCKLGALPTVYLGLPLGAHHKTSSSWDGVEE 1454

Query: 699  KIRGRLHSWSSNFLSFGGRITLLQSVLTTLPTYYIQVIQMPEAVYNKIDKKFNTFLWDG- 875
            ++R RL  W   ++S GGRITL++S L ++P Y++ +I++P++V  +I+K    FLW G 
Sbjct: 1455 RMRRRLAQWKKQYISKGGRITLIKSTLASIPIYFLSLIRIPKSVTKRIEKIQKDFLWGGG 1514

Query: 876  -----MPWCKWSKVCAPYEEGGLNMRR 941
                     KW  VC+P EEGGL +R+
Sbjct: 1515 SLERKAHLIKWKVVCSPKEEGGLGIRK 1541