BLASTX nr result
ID: Lithospermum22_contig00006729
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00006729
(829 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEC76774.1| hypothetical protein OsI_14862 [Oryza sativa Indi... 77 6e-28
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S... 81 6e-28
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 74 5e-27
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 74 5e-27
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 75 1e-26
>gb|EEC76774.1| hypothetical protein OsI_14862 [Oryza sativa Indica Group]
Length = 1860
Score = 76.6 bits (187), Expect(3) = 6e-28
Identities = 36/82 (43%), Positives = 52/82 (63%)
Frame = +3
Query: 126 RLLSKARKEVIIIAVLQALPTYVVQCFLSPVHICKEMHSVIASY*WGSDTENKKIHSASW 305
R +S+A KE ++ AV QA+PTYV+ CF PV C++M S I + WG + KK+H SW
Sbjct: 1556 RPMSRAGKETMLKAVAQAIPTYVMSCFKLPVSTCEKMKSCILDHWWGFEDGKKKMHWRSW 1615
Query: 306 RTLSLSKNQGSLRFRDMHHFNQ 371
++ K+ G + FRD+ FNQ
Sbjct: 1616 EWMTTPKSLGGMGFRDLGLFNQ 1637
Score = 48.5 bits (114), Expect(3) = 6e-28
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +2
Query: 371 ALLCKQV*RLLTKPESPLAKVYKSKYFSNVDFWIATLGPKSSFTWRSLLFG 523
A+L +Q R++T S A+V K +YF N D W A +SFTWRS+LFG
Sbjct: 1638 AMLARQGWRIVTDLVSLCARVLKGRYFPNSDLWNAPKPTATSFTWRSILFG 1688
Score = 45.8 bits (107), Expect(3) = 6e-28
Identities = 22/72 (30%), Positives = 42/72 (58%)
Frame = +1
Query: 535 ITPALKNFPNATISDLIDEYIGTWNISKV*SWFFNVDSEEILKMPLNNLSQADSIIWEPH 714
+ P L + T+ L+++ IG W+ KV S+F +++IL++P++ D I W
Sbjct: 1722 VRPLLPLPEDVTVDFLVNDAIGEWDEDKVFSFFDETTTQQILQIPVSAHGGEDFISWPHD 1781
Query: 715 PKGMFIVKTAYD 750
+G+F V++AY+
Sbjct: 1782 KRGVFSVRSAYN 1793
>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
gi|241926916|gb|EES00061.1| hypothetical protein
SORBIDRAFT_03g001780 [Sorghum bicolor]
Length = 631
Score = 81.3 bits (199), Expect(3) = 6e-28
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +3
Query: 120 ETRLLSKARKEVIIIAVLQALPTYVVQCFLSPVHICKEMHSVIASY*WGSDTENKKIHSA 299
+ +LLSKA KE++I AV Q++PTY + CF +C E+ S+I Y W + KIH
Sbjct: 361 QEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTKGLCDELSSIIGRYWWSQQDKANKIHWI 420
Query: 300 SWRTLSLSKNQGSLRFRDMHHFN 368
SW L+ SK +G L FRD+H FN
Sbjct: 421 SWEKLTQSKEKGGLGFRDLHLFN 443
Score = 45.8 bits (107), Expect(3) = 6e-28
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 371 ALLCKQV*RLLTKPESPLAKVYKSKYFSNVDFWIATLGPKSSFTWRSLLFG 523
A+L +Q RLLT P+S +V K++YF + D + P+ S+TWRS+L G
Sbjct: 445 AMLSRQAWRLLTNPDSLCGQVLKARYFPHSDILHCSPRPRISYTWRSILKG 495
Score = 43.9 bits (102), Expect(3) = 6e-28
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +1
Query: 523 SRKPITPALKNFPNATISDLIDEYIGTWNISKV*SWFFNVDSEEILKMPLNNLSQADSII 702
+RKPITP + +++LI+ G W+ V F+ D+EEIL++P++ D +
Sbjct: 526 TRKPITPRGASLLTR-VNELINPVTGEWDEQLVNDLFWPQDAEEILQIPIDE-HMEDWLA 583
Query: 703 WEPHPKGMFIVKTAY 747
W G+F VK+AY
Sbjct: 584 WHFDATGLFSVKSAY 598
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 73.9 bits (180), Expect(3) = 5e-27
Identities = 37/82 (45%), Positives = 50/82 (60%)
Frame = +3
Query: 126 RLLSKARKEVIIIAVLQALPTYVVQCFLSPVHICKEMHSVIASY*WGSDTENKKIHSASW 305
R LS+A E ++ AV QA+P YV+ CF PV IC++M + IA + WG + KK+H SW
Sbjct: 797 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 856
Query: 306 RTLSLSKNQGSLRFRDMHHFNQ 371
LS K G + FR+ FNQ
Sbjct: 857 SWLSTPKFLGGMGFREFTTFNQ 878
Score = 55.5 bits (132), Expect(3) = 5e-27
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 359 SLQSALLCKQV*RLLTKPESPLAKVYKSKYFSNVDFWIATLGPKSSFTWRSLLFG 523
+ A+L +Q RLLT P+S ++V K +YF N FW A SFTWRSLLFG
Sbjct: 875 TFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFG 929
Score = 38.5 bits (88), Expect(3) = 5e-27
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 526 RKPITPALKNFP-NATISDLIDEYIGTWNISKV*SWFFNVDSEEILKMPLNNLSQADSII 702
R + L FP +AT+S L++E W+ + S F ++EIL++P++ AD
Sbjct: 959 RPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFAS 1018
Query: 703 WEPHPK-GMFIVKTAYD 750
W PH K G++ V++AY+
Sbjct: 1019 W-PHDKLGLYSVRSAYN 1034
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 73.9 bits (180), Expect(3) = 5e-27
Identities = 37/82 (45%), Positives = 50/82 (60%)
Frame = +3
Query: 126 RLLSKARKEVIIIAVLQALPTYVVQCFLSPVHICKEMHSVIASY*WGSDTENKKIHSASW 305
R LS+A E ++ AV QA+P YV+ CF PV IC++M + IA + WG + KK+H SW
Sbjct: 754 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 813
Query: 306 RTLSLSKNQGSLRFRDMHHFNQ 371
LS K G + FR+ FNQ
Sbjct: 814 SWLSTPKFLGGMGFREFTTFNQ 835
Score = 55.5 bits (132), Expect(3) = 5e-27
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 359 SLQSALLCKQV*RLLTKPESPLAKVYKSKYFSNVDFWIATLGPKSSFTWRSLLFG 523
+ A+L +Q RLLT P+S ++V K +YF N FW A SFTWRSLLFG
Sbjct: 832 TFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFG 886
Score = 38.5 bits (88), Expect(3) = 5e-27
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 526 RKPITPALKNFP-NATISDLIDEYIGTWNISKV*SWFFNVDSEEILKMPLNNLSQADSII 702
R + L FP +AT+S L++E W+ + S F ++EIL++P++ AD
Sbjct: 916 RPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFAS 975
Query: 703 WEPHPK-GMFIVKTAYD 750
W PH K G++ V++AY+
Sbjct: 976 W-PHDKLGLYSVRSAYN 991
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 74.7 bits (182), Expect(3) = 1e-26
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Frame = +3
Query: 99 EAYDSRLE---TRLLSKARKEVIIIAVLQALPTYVVQCFLSPVHICKEMHSVIASY*WGS 269
E SRL + LS+ KEV++ ++ ALP YV+ CF P ++C+++ +V+ + W S
Sbjct: 769 EKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS 828
Query: 270 DTENKKIHSASWRTLSLSKNQGSLRFRDMHHFNQ 371
+ +KIH SW+ L+L K+QG F+D+ FNQ
Sbjct: 829 MQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQ 862
Score = 54.7 bits (130), Expect(3) = 1e-26
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +2
Query: 371 ALLCKQV*RLLTKPESPLAKVYKSKYFSNVDFWIATLGPKSSFTWRSLLFG 523
ALL KQ R+L + S ++V++S+YFSN DF AT G + S+ WRS+LFG
Sbjct: 863 ALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFG 913
Score = 37.4 bits (85), Expect(3) = 1e-26
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Frame = +1
Query: 514 PLWSRKPITPALKNFPNATISDLIDEYIGTWNISKV*SWFFNVDSEEILKM-PLNNLSQA 690
PL R+ I LK +S LID WN++ + F D E ILK PL +
Sbjct: 947 PLNRRRFINVDLK------VSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPL--FFKE 998
Query: 691 DSIIWEPHPKGMFIVKTAYDFI-----HALSQD*SLSATISDL 804
DS W G++ VKT Y+F+ H L Q+ + +++ L
Sbjct: 999 DSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSL 1041