BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00005886
         (1911 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   166   2e-76
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   148   1e-73
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               160   4e-69
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   150   7e-69
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   150   1e-67

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  166 bits (421), Expect(3) = 2e-76
 Identities = 82/195 (42%), Positives = 123/195 (63%)
 Frame = +2

Query: 8    LGYPAPFIGWIRACVIYVWFSISINGSLNGFFKNGRGLRQGDPISPYLFILVMDFFSELL 187
            LG+P  FI WI  C+    FS+ +NG L G+F++ RGLRQG  +SPYLF++ MD  S++L
Sbjct: 619  LGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKML 678

Query: 188  KSKIRSDNFEYHRGCKKINLVNMSFADDLFIMCGAKGKSMQLVKSVLEEFGEYSGFKHNL 367
                 + +F YH  CK + L ++SFADDL ++   K +S++ +  V +EF ++SG + +L
Sbjct: 679  DKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISL 738

Query: 368  AKSSCYFAGTS*SEEARPSGILGIPVAVLPVKYLGILLTTKQLSSLDCRFLVEKVRGKIE 547
             KS+ Y AG S +     +         LPV+YLG+ L TK+LS+ DC  L+E+VR +I 
Sbjct: 739  EKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIG 798

Query: 548  GWGNKNLSFAGRLTL 592
             W ++ LS+AGRL L
Sbjct: 799  SWTSRFLSYAGRLNL 813



 Score =  103 bits (258), Expect(3) = 2e-76
 Identities = 81/293 (27%), Positives = 124/293 (42%), Gaps = 16/293 (5%)
 Frame = +1

Query: 802  IWIAYIGKEVLWVRWINTVRLKGQSFLGIKVR-GVDSWVWKKILTLREDLKENVMYMVEN 978
            +W        LWV+W++   L+  SF  +K      SW+WKK+L  RE  K      V N
Sbjct: 891  VWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGN 950

Query: 979  RKTVNCLYHIWSSVGVMAEVLSDKDISNLNLRPTDTIVEFMSKLRWPCGRRVTAGVQIYR 1158
             K  +  Y  WS +G + E   D+ + +L +    T+ E  +  R    R     V    
Sbjct: 951  GKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNV--IE 1008

Query: 1159 DSMPIAF---TDCADEVEWFVHGKHH-------TAFVWNQLRSKPSDVWWWKVVWFSDNV 1308
            D++  ++   T+  D+V W   GK         T   W+  RS  + V W KV+WFS   
Sbjct: 1009 DALKKSWDTRTETEDKVLW--RGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHAT 1066

Query: 1309 PKFSFITWVLFLERLHTKDQLHRWGVIESSTCYFC---*EEENHV*MFFQCPFAAAVWRK 1479
            PK+SF +W+    RL T D++  W    ++ C FC    E  +H  +FF C F + +W  
Sbjct: 1067 PKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDH--LFFTCSFTSVIWVD 1124

Query: 1480 VL--VYLGEYHDPQNWIAEARWIASXXXXXXXXXXXXXXCITTMVYHVWRVRN 1632
            +   ++  +Y      I EA    +                   +Y VWR RN
Sbjct: 1125 LARGIFKTQYTSHWQSIIEA---ITNSQHHRVEWFLRRYVFQATIYIVWRERN 1174



 Score = 65.5 bits (158), Expect(3) = 2e-76
 Identities = 25/75 (33%), Positives = 48/75 (64%)
 Frame = +3

Query: 588  HLINFLIFGVCNYWCQTTFIPKKTEKEIEKLMKSYLWKGSSVGKFLSKVSWKQVTLKKSE 767
            +LI+ +++ +CN+W     +P+K  +E+EK+  ++LW G+ +    +K+SW  V   K E
Sbjct: 812  NLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDE 871

Query: 768  GGLGVKNIQTWNMDC 812
            GGLG+++++  N  C
Sbjct: 872  GGLGLRSLKEANDVC 886


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  148 bits (373), Expect(3) = 1e-73
 Identities = 74/192 (38%), Positives = 110/192 (57%)
 Frame = +2

Query: 17   PAPFIGWIRACVIYVWFSISINGSLNGFFKNGRGLRQGDPISPYLFILVMDFFSELLKSK 196
            P  F+ WI+ C+    FSI+++GSL G+FK  +GLRQGDP+SP LF++ M+  S LL++K
Sbjct: 615  PPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENK 674

Query: 197  IRSDNFEYHRGCKKINLVNMSFADDLFIMCGAKGKSMQLVKSVLEEFGEYSGFKHNLAKS 376
                +  YH    ++ + +++FADDL I    K  S++ +KSVLE F   SG + N  KS
Sbjct: 675  FSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKS 734

Query: 377  SCYFAGTS*SEEARPSGILGIPVAVLPVKYLGILLTTKQLSSLDCRFLVEKVRGKIEGWG 556
            + Y AG     +   +   G      P +YLG+ L  ++L   D   L++K+  +   W 
Sbjct: 735  AVYTAGLE-DTDKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWA 793

Query: 557  NKNLSFAGRLTL 592
             K LSFAGRL L
Sbjct: 794  TKTLSFAGRLQL 805



 Score =  118 bits (295), Expect(3) = 1e-73
 Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 11/288 (3%)
 Frame = +1

Query: 802  IWIAYIGKEVLWVRWINTVRLKGQSFLGIKVRGVDSWVWKKILTLREDLKENVMYMVENR 981
            IW+ +  ++ LWV W +  RL+  +F   +     SW+WK IL LR   K  +   V N 
Sbjct: 883  IWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNG 942

Query: 982  KTVNCLYHIWSSVGVMAEVLSDKDISNLNLRPTDTIVEFMSKLRW--PCGRRVTAGVQIY 1155
            + ++  Y  WS++G + E +         +  +  + E  S   W  P  R   A +   
Sbjct: 943  QLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANL 1002

Query: 1156 RDSMPIAFTDCADEVE----WFVHGKHHTAF----VWNQLRSKPSDVWWWKVVWFSDNVP 1311
            R ++  +     D  E    W++ G   T+F     W  LR + +   W   VW+   +P
Sbjct: 1003 RSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIP 1062

Query: 1312 KFSFITWVLFLERLHTKDQLHRWGVIESSTCYFC*EE-ENHV*MFFQCPFAAAVWRKVLV 1488
            K++F  WV  L RL  + +   W     S C  C  E E    +F  C   + +W++VL 
Sbjct: 1063 KYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLA 1122

Query: 1489 YLGEYHDPQNWIAEARWIASXXXXXXXXXXXXXXCITTMVYHVWRVRN 1632
              G     + W     W+ S               + T ++H+W+ RN
Sbjct: 1123 RFGRSQMFREWKDIIEWMLS--NQGSFSGTLKKLAVQTAIFHIWKERN 1168



 Score = 60.5 bits (145), Expect(3) = 1e-73
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = +3

Query: 591  LINFLIFGVCNYWCQTTFIPKKTEKEIEKLMKSYLWKGSSVGKFLSKVSWKQVTLKKSEG 770
            LI+ +I+   N+W  +  +PK   K IE++   +LW      +   KVSW+   L K+EG
Sbjct: 805  LISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEG 864

Query: 771  GLGVKNIQTWN 803
            GLG++N  TWN
Sbjct: 865  GLGLRNFWTWN 875


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  160 bits (404), Expect(3) = 4e-69
 Identities = 80/193 (41%), Positives = 121/193 (62%)
 Frame = +2

Query: 14  YPAPFIGWIRACVIYVWFSISINGSLNGFFKNGRGLRQGDPISPYLFILVMDFFSELLKS 193
           +P  FI WIR C+    FS+ +NG L GFF++ RGLRQG  +SPYLF++ MD  S+LL  
Sbjct: 174 FPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDK 233

Query: 194 KIRSDNFEYHRGCKKINLVNMSFADDLFIMCGAKGKSMQLVKSVLEEFGEYSGFKHNLAK 373
            +      YH  CK++ L ++SFADDL I+   + +S++ +  V + F ++SG K ++ K
Sbjct: 234 VVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEK 293

Query: 374 SSCYFAGTS*SEEARPSGILGIPVAVLPVKYLGILLTTKQLSSLDCRFLVEKVRGKIEGW 553
           S+ + AG S +  A+        V  LP++YLG+ L TK+LSS+D   L+E++R +I  W
Sbjct: 294 STIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSW 353

Query: 554 GNKNLSFAGRLTL 592
            ++ LSFAGR  L
Sbjct: 354 SSRFLSFAGRFNL 366



 Score = 82.0 bits (201), Expect(3) = 4e-69
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 14/218 (6%)
 Frame = +1

Query: 802  IWIAYIGKEVLWVRWINTVRLKGQSFLGIKVRG-VDSWVWKKILTLREDLKENVMYMVEN 978
            +W      + LWV+W+    LK + F  +K    + SW+WKKIL  R   K      V N
Sbjct: 444  VWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGN 503

Query: 979  RKTVNCLYHIWSSVGVMAEVLSDKDISNLNLRPTDTIVEFMSKLRWPCGRRVTAGVQIYR 1158
             ++ +  +  WS +G + +V   +   ++ +  T ++ +      W   RR     +I  
Sbjct: 504  GESTSFWFDDWSLLGRLIDVAGIRGTIDMGISRTMSVAD-----AWTSRRRRHHRQEILN 558

Query: 1159 DSMPIAFTDCADEVEWFVHG-------------KHHTAFVWNQLRSKPSDVWWWKVVWFS 1299
                +  T      +    G             K  T   WN LR+  ++V W K VWF 
Sbjct: 559  TIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVAWHKGVWFP 618

Query: 1300 DNVPKFSFITWVLFLERLHTKDQLHRWGVIESSTCYFC 1413
               PK+SF  W+   +RL T  ++ +W   E+  C FC
Sbjct: 619  HATPKYSFCLWLAAHDRLATGARMIKWNRGETGDCTFC 656



 Score = 69.3 bits (168), Expect(3) = 4e-69
 Identities = 30/75 (40%), Positives = 49/75 (65%)
 Frame = +3

Query: 588 HLINFLIFGVCNYWCQTTFIPKKTEKEIEKLMKSYLWKGSSVGKFLSKVSWKQVTLKKSE 767
           +LI+ +I+  CN+W     +P+   +EIEKL  S+LW G+++    +K+SW QV   KSE
Sbjct: 365 NLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSE 424

Query: 768 GGLGVKNIQTWNMDC 812
           GGLG+++++  N  C
Sbjct: 425 GGLGLRSLKEANDVC 439


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  150 bits (378), Expect(3) = 7e-69
 Identities = 78/195 (40%), Positives = 113/195 (57%)
 Frame = +2

Query: 8    LGYPAPFIGWIRACVIYVWFSISINGSLNGFFKNGRGLRQGDPISPYLFILVMDFFSELL 187
            L +P  F  WI+ C+    FS+ +NG L GFF + RGLRQG  +SPYLF++ M+  S ++
Sbjct: 916  LNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMI 975

Query: 188  KSKIRSDNFEYHRGCKKINLVNMSFADDLFIMCGAKGKSMQLVKSVLEEFGEYSGFKHNL 367
                   N  YH  C+KI L ++ FADDL +       S++ V +V +EF   SG + +L
Sbjct: 976  DEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISL 1035

Query: 368  AKSSCYFAGTS*SEEARPSGILGIPVAVLPVKYLGILLTTKQLSSLDCRFLVEKVRGKIE 547
             KS+ Y AG S S+  +           LPV+YLG+ L TKQ+++ D   L+E V+ KI 
Sbjct: 1036 EKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKIS 1095

Query: 548  GWGNKNLSFAGRLTL 592
             W  ++LS+AGRL L
Sbjct: 1096 SWTARSLSYAGRLAL 1110



 Score =  102 bits (255), Expect(3) = 7e-69
 Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 10/336 (2%)
 Frame = +1

Query: 802  IWIAYIGKEVLWVRWINTVRLKGQSFLGIKVRG-VDSWVWKKILTLREDLKENVMYMVEN 978
            IW     +  LWV WI T  ++  +F     R  + SW+WKK+L  RE  K      V N
Sbjct: 1188 IWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRN 1247

Query: 979  RKTVNCLYHIWSSVGVMAEVLSDKDISNLNLRPTDTIVEFMSKL------RWPCGRRVTA 1140
              + +  Y  WS +G + ++   + + +L + P +T +E + +       R     R+ A
Sbjct: 1248 GSSTSFWYDHWSHLGRLLDITGTRRVIDLGI-PLETNLETVLRTHQHRQHRAAIYNRINA 1306

Query: 1141 GVQIYRDSMPIAFTDCA--DEVEWFVHGKHHTAFVWNQLRSKPSDVWWWKVVWFSDNVPK 1314
             +Q  +     A  D +    ++   + +  T   WN +R+      W+K VWF  + PK
Sbjct: 1307 EIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPK 1366

Query: 1315 FSFITWVLFLERLHTKDQLHRWGVIESSTCYFC*E-EENHV*MFFQCPFAAAVWRKVLVY 1491
            +SF+ W+    RL T D++  W   +  TC  C   EE    +FF C + + VW  +   
Sbjct: 1367 YSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQR 1426

Query: 1492 LGEYHDPQNWIAEARWIASXXXXXXXXXXXXXXCITTMVYHVWRVRNDVVFNKGIMEIGH 1671
            L   +  ++W      +                     +YH+WR RN     +       
Sbjct: 1427 LLSTNYSRDW-NRLFTLLCTSNLPRDHLFLFRYVFQASIYHIWRERNARRHGEISSPTNR 1485

Query: 1672 VVATCIHNIKSKVDSWRNIKRNRTNYKTCIE*GFNL 1779
            ++      +++++ S R+   +  NY  C++  F++
Sbjct: 1486 LIKLIDKTVRNRISSIRDTGDH--NYNDCMQLWFSM 1519



 Score = 57.8 bits (138), Expect(3) = 7e-69
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +3

Query: 591  LINFLIFGVCNYWCQTTFIPKKTEKEIEKLMKSYLWKGSSVGKFLSKVSWKQVTLKKSEG 770
            L+N +I  + N+W     +P    +EIEKL  ++LW G  +    +K++W  +   K EG
Sbjct: 1110 LLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEG 1169

Query: 771  GLGVKNIQTWN 803
            GLG+K++   N
Sbjct: 1170 GLGIKSLAEAN 1180


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  150 bits (379), Expect(3) = 1e-67
 Identities = 78/195 (40%), Positives = 114/195 (58%)
 Frame = +2

Query: 8   LGYPAPFIGWIRACVIYVWFSISINGSLNGFFKNGRGLRQGDPISPYLFILVMDFFSELL 187
           + +P  FI WI  C+    FSI +NG L G+F++ RGLRQG  +SPYLF++ MD  S +L
Sbjct: 340 MNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRML 399

Query: 188 KSKIRSDNFEYHRGCKKINLVNMSFADDLFIMCGAKGKSMQLVKSVLEEFGEYSGFKHNL 367
                +  F YH  CK + L ++ FADDL I+   K +S+  +  VL +F    G K  +
Sbjct: 400 DKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICM 459

Query: 368 AKSSCYFAGTS*SEEARPSGILGIPVAVLPVKYLGILLTTKQLSSLDCRFLVEKVRGKIE 547
            K++ Y AG S       S      V  LPV+YLG+ L TK+L++ D   L++++R +I 
Sbjct: 460 EKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIG 519

Query: 548 GWGNKNLSFAGRLTL 592
            W ++ LSFAGRL+L
Sbjct: 520 MWTSRYLSFAGRLSL 534



 Score =  100 bits (250), Expect(3) = 1e-67
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 16/293 (5%)
 Frame = +1

Query: 802  IWIAYIGKEVLWVRWINTVRLKGQSFLGIKVRG-VDSWVWKKILTLREDLKENVMYMVEN 978
            IW     ++ LWV+W     LK +SF  I     + SW+W+++L  RE  K      V N
Sbjct: 612  IWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNN 671

Query: 979  RKTVNCLYHIWSSVGVMAEVLSDKDISNLNLRPTDTIVEFMSKLRWPCGRRVTAGVQIYR 1158
                +  +  WS  G +  +   +   ++ +    T+ E      W   RR    V+I  
Sbjct: 672  GVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAE-----AWSRRRRKRHRVEILN 726

Query: 1159 DSMPIAFT-------DCADEVEW-----FVHGKHHTAFVWNQLRSKPSDVWWWKVVWFSD 1302
            +   I          +  D + W         +  T   WN +R+  +   W K VWF+ 
Sbjct: 727  EFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAH 786

Query: 1303 NVPKFSFITWVLFLERLHTKDQLHRWGVIESSTCYFC---*EEENHV*MFFQCPFAAAVW 1473
              PKFSF  W+    RL T D++  W     +TC FC    E  +H  +FFQC +++ +W
Sbjct: 787  ATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDH--LFFQCCYSSEIW 844

Query: 1474 RKVLVYLGEYHDPQNWIAEARWIASXXXXXXXXXXXXXXCITTMVYHVWRVRN 1632
              +   + +      W A   +I S                   ++ +WR RN
Sbjct: 845  TSIAKNVYKDRFSTKWSAVVNYI-SDSQPDRIQSFLSRYTFQVSIHSIWRERN 896



 Score = 55.5 bits (132), Expect(3) = 1e-67
 Identities = 22/71 (30%), Positives = 42/71 (59%)
 Frame = +3

Query: 591 LINFLIFGVCNYWCQTTFIPKKTEKEIEKLMKSYLWKGSSVGKFLSKVSWKQVTLKKSEG 770
           LIN +++ + N+W     +P++   EI ++  + LW G  +    +KVSW ++   K EG
Sbjct: 534 LINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEG 593

Query: 771 GLGVKNIQTWN 803
           GLG+++++  N
Sbjct: 594 GLGLQSLREAN 604