BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00005730
         (1354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306264.1| chromatin remodeling complex subunit [Populu...    94   8e-17
ref|XP_003630305.1| DNA excision repair protein ERCC-6-like prot...    93   1e-16
ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-...    92   3e-16
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...    91   7e-16
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...    90   1e-15

>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222855713|gb|EEE93260.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1058

 Score = 94.0 bits (232), Expect = 8e-17
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
 Frame = -1

Query: 1354 LQEFYALFDLCVPGLLHDKKWFRDRFETPIL---DTNAPRRVKRAGKSAAEEMNLLTKQF 1184
            L+E +ALF+ C PGLL D KWF++ +E PIL   + NA  R KR G + A+E+    + +
Sbjct: 541  LKELWALFNFCCPGLLGDNKWFKETYEHPILRGNEKNASDREKRIGSTVAKELRERIQPY 600

Query: 1183 MLRRMKNEFFIPNDTTGSGELPSKHDLIIWLKLTSCQV*FFSAF 1052
             LRRMKNE F  +D T + +L  K+++I+WL+LT+CQ   + AF
Sbjct: 601  FLRRMKNEVFKEDDAT-TAKLSRKNEIIVWLRLTACQRQLYEAF 643



 Score = 71.2 bits (173), Expect = 6e-10
 Identities = 61/178 (34%), Positives = 78/178 (43%), Gaps = 6/178 (3%)
 Frame = -3

Query: 587  ILKNICDHPSLLKTIVVEDFCQDMD-VLSEKDHRVAKKLAAHVATSVAESVNTT-----N 426
            ILK ICDHP LL     ED  + M+ +L+ +D  VA+KLA H+A  VA+  +T      +
Sbjct: 663  ILKKICDHPLLLTKRAAEDLLEGMESMLNPEDAAVAEKLAMHLA-DVADRTDTDFQEKHD 721

Query: 425  DISCKISFILSLLVS*PYQILLM*YSISFGV*YIYFQ*QKKLILEGHRVLIFSHSCKMLD 246
            +ISCKISFILSLL                            LI EGH VLIFS + KML+
Sbjct: 722  NISCKISFILSLL--------------------------DNLIPEGHNVLIFSQTRKMLN 755

Query: 245  IIEVRFMLF*LLMISYSTYLYNYFPLFG**HTLKSPELNYSLTRIDGSTPTDDRAKRV 72
            +I+   +                                Y   RIDG+T   DR K V
Sbjct: 756  LIQESLV-----------------------------SNGYEFIRIDGTTKATDRTKIV 784


>ref|XP_003630305.1| DNA excision repair protein ERCC-6-like protein [Medicago truncatula]
            gi|355524327|gb|AET04781.1| DNA excision repair protein
            ERCC-6-like protein [Medicago truncatula]
          Length = 1129

 Score = 93.2 bits (230), Expect = 1e-16
 Identities = 57/155 (36%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
 Frame = -1

Query: 1354 LQEFYALFDLCVPGLLHDKKWFRDRFETPIL---DTNAPRRVKRAGKSAAEEMNLLTKQF 1184
            L+E +ALF+ C P LL DKKWF+D++ETPIL   D NA  R K  G S A+E+    + +
Sbjct: 559  LKELWALFNFCCPDLLGDKKWFKDKYETPILKGNDKNASAREKCIGSSVAKELRDHIQPY 618

Query: 1183 MLRRMKNEFFIPNDTTGSGELPSKHDLIIWLKLTSCQV*FFSAFSHFKCRTLYLGKNVFN 1004
             LRR+K+E F  +    + +L  K ++I+WL+LT                          
Sbjct: 619  FLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLT-------------------------- 652

Query: 1003 DFHWNVQRNIYNAVLKYEIGQWTSDICPLAKLKVI 899
                NVQR++Y A LK EI     D  PLA L ++
Sbjct: 653  ----NVQRHLYEAFLKSEIVLSAFDGSPLAALTIL 683



 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
 Frame = -3

Query: 587 ILKNICDHPSLLKTIVVEDFCQDMD-VLSEKDHRVAKKLAAHVATSVAES--VNTTNDIS 417
           ILK ICDHP LL     ED    ++ +L  ++  VA+KLA H+A  VAE+      +D+S
Sbjct: 682 ILKKICDHPLLLTKRAAEDVLDGLESMLKPEEVNVAEKLAMHIA-DVAETDKFEDKHDVS 740

Query: 416 CKISFILSLLVS*PYQILLM*YSISFGV*YIYFQ*QKKLILEGHRVLIFSHSCKMLDIIE 237
           CKI FI+SLL                            LI EGHRVLIFS + KML++I+
Sbjct: 741 CKIVFIMSLL--------------------------DNLIPEGHRVLIFSQTRKMLNLIQ 774


>ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
          Length = 1030

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
 Frame = -1

Query: 1354 LQEFYALFDLCVPGLLHDKKWFRDRFETPIL---DTNAPRRVKRAGKSAAEEMNLLTKQF 1184
            L+E +ALF+ C P LL D KWF++RFE PIL   D +A  R KR G S A+E+      +
Sbjct: 500  LKELWALFNFCCPELLGDHKWFKERFENPILRGNDKHASDREKRVGSSVAKELRDRIHPY 559

Query: 1183 MLRRMKNEFFIPNDTTGSGELPSKHDLIIWLKLTSCQV*FFSAFSHFKCRTLYLGKNVFN 1004
             LRR+K+E F  +D   + +L  K ++I+WL+LTS                         
Sbjct: 560  FLRRLKSEVFNQDDEKTTAKLSQKQEIIVWLRLTS------------------------- 594

Query: 1003 DFHWNVQRNIYNAVLKYEIGQWTSDICPLAKLKVI 899
                 VQR++Y A LK EI     D  PLA L ++
Sbjct: 595  -----VQRHLYEAFLKSEIVLSAFDGSPLAALTIL 624



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 57/174 (32%), Positives = 73/174 (41%), Gaps = 2/174 (1%)
 Frame = -3

Query: 587 ILKNICDHPSLLKTIVVEDFCQDMD-VLSEKDHRVAKKLAAHVA-TSVAESVNTTNDISC 414
           ILK ICDHP LL     ED  + MD +L  ++  VA+KLA H+A  +  +      D+SC
Sbjct: 623 ILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAEKLAMHIADVAGTDKFKDEQDVSC 682

Query: 413 KISFILSLLVS*PYQILLM*YSISFGV*YIYFQ*QKKLILEGHRVLIFSHSCKMLDIIEV 234
           KISFI+SLL                            LI EGH VLIFS + KML++I+ 
Sbjct: 683 KISFIMSLL--------------------------DNLIPEGHCVLIFSQTRKMLNLIQE 716

Query: 233 RFMLF*LLMISYSTYLYNYFPLFG**HTLKSPELNYSLTRIDGSTPTDDRAKRV 72
             +                                Y   RIDG+T   DR K V
Sbjct: 717 CLV-----------------------------SEGYDFLRIDGTTKATDRLKIV 741


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222852831|gb|EEE90378.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1108

 Score = 90.9 bits (224), Expect = 7e-16
 Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
 Frame = -1

Query: 1354 LQEFYALFDLCVPGLLHDKKWFRDRFETPIL---DTNAPRRVKRAGKSAAEEMNLLTKQF 1184
            L+E +ALF+ C P LL D KWF+  +E PIL   + NA  R KR G + A E+    + +
Sbjct: 563  LKELWALFNFCCPDLLGDNKWFKQTYEHPILRGNEKNASDREKRIGSTVAMELRERIQPY 622

Query: 1183 MLRRMKNEFFIPNDTTGSGELPSKHDLIIWLKLTSCQV*FFSAFSHFKCRTLYLGKNVFN 1004
             LRRMKNE F  +D T + +L  K+++I+WL+LT+CQ          + R L        
Sbjct: 623  FLRRMKNEVFKEDDAT-TAKLSRKNEIIVWLRLTTCQ----------QLRPLL------- 664

Query: 1003 DFHWNVQRNIYNAVLKYEIGQWTSDICPLAKLKVI 899
                  QR +Y A L+ EI     D  PLA L ++
Sbjct: 665  -----CQRQLYEAFLRSEIVLSAFDGSPLAALTIL 694



 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 74/223 (33%), Positives = 97/223 (43%), Gaps = 4/223 (1%)
 Frame = -3

Query: 728  WLTL*TCSRLFPSYLCLKYIVSCKIKIASRNFVIVF*SL*SNWNLM*ILKNICDHPSLLK 549
            WL L TC +L P  LC + +    +    R+ +++     S    + ILK ICDHP LL 
Sbjct: 651  WLRLTTCQQLRP-LLCQRQLYEAFL----RSEIVLSAFDGSPLAALTILKKICDHPLLLT 705

Query: 548  TIVVEDFCQDMD-VLSEKDHRVAKKLAAHVATSVAESVN---TTNDISCKISFILSLLVS 381
                ED  + M+ +L+ +D  VA+KLA HVA  VAE  +     + ISCKISF+LSLL  
Sbjct: 706  KRAAEDLLEGMESMLNPEDVAVAEKLAMHVA-DVAERTDFQEKHDSISCKISFVLSLL-- 762

Query: 380  *PYQILLM*YSISFGV*YIYFQ*QKKLILEGHRVLIFSHSCKMLDIIEVRFMLF*LLMIS 201
                                      LI EGH VLIFS + KML++IE   +        
Sbjct: 763  ------------------------DNLIPEGHNVLIFSQTRKMLNLIEESLV-------- 790

Query: 200  YSTYLYNYFPLFG**HTLKSPELNYSLTRIDGSTPTDDRAKRV 72
                                    Y   RIDG+T   DRAK V
Sbjct: 791  ---------------------SNGYEFLRIDGTTKVTDRAKIV 812


>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
            gi|296088517|emb|CBI37508.3| unnamed protein product
            [Vitis vinifera]
          Length = 1043

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
 Frame = -1

Query: 1354 LQEFYALFDLCVPGLLHDKKWFRDRFETPIL---DTNAPRRVKRAGKSAAEEMNLLTKQF 1184
            L+E +ALF  C P LL DK WF+ ++E+PIL   D NA  R K      A+E+    + +
Sbjct: 504  LKELWALFSFCCPELLGDKNWFKVKYESPILRGNDKNASDREKHISSRVAKELRERIQPY 563

Query: 1183 MLRRMKNEFFIPNDTTGSGELPSKHDLIIWLKLTSCQV*FFSAF 1052
             LRR+KNE F  +D + + +L  K+++I+WL+LTSCQ   + AF
Sbjct: 564  FLRRLKNEVFHEDDASETAKLSKKNEIIVWLRLTSCQRQLYEAF 607



 Score = 71.2 bits (173), Expect = 6e-10
 Identities = 60/175 (34%), Positives = 81/175 (46%), Gaps = 3/175 (1%)
 Frame = -3

Query: 587 ILKNICDHPSLLKTIVVEDFCQDMD-VLSEKDHRVAKKLAAHVATSVA--ESVNTTNDIS 417
           ILK ICDHP LL    VED  + MD +L+++D  +A KLA H+AT+    + +   +++S
Sbjct: 627 ILKKICDHPLLLTKRAVEDVLEGMDSMLNQEDLGMASKLAMHLATAYERDDFLEKNDNVS 686

Query: 416 CKISFILSLLVS*PYQILLM*YSISFGV*YIYFQ*QKKLILEGHRVLIFSHSCKMLDIIE 237
            K+SFIL+LL                            LI EGH VLIFS + KML++IE
Sbjct: 687 SKMSFILALL--------------------------DTLIPEGHNVLIFSQTRKMLNLIE 720

Query: 236 VRFMLF*LLMISYSTYLYNYFPLFG**HTLKSPELNYSLTRIDGSTPTDDRAKRV 72
                   L+IS                        Y   RIDG+T  +DR K V
Sbjct: 721 E-------LLISN----------------------GYKFLRIDGTTKANDRVKIV 746