BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00005446
         (870 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]   220   3e-55
ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloropla...   220   4e-55
gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]    219   5e-55
ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana] g...   219   5e-55
pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Pe...   219   5e-55

>gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  220 bits (561), Expect = 3e-55
 Identities = 102/158 (64%), Positives = 128/158 (81%)
 Frame = +2

Query: 125 DTMYKTEGIGLSGPQVGMNVQLMVFNPXXXXXXXXXXXXXNPKVVRYSRKIVAYDEGCLS 304
           D MYKT+GIGLS PQVG+NVQLMVFNP             NPK+ +YS K+V +DEGCLS
Sbjct: 114 DVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLS 173

Query: 305 FPGIYADVERPDSIKVDAQDVTGAKFSVSLSGLRARVFQHEFDHLQGILFFDRMSDEVVD 484
           FPGIYA+V RP S+K+DA+D+TG +FS+SLS L AR+FQHE+DHL+G+LFFDRM+D+V+D
Sbjct: 174 FPGIYAEVVRPQSVKIDARDITGERFSISLSSLPARIFQHEYDHLEGVLFFDRMTDQVLD 233

Query: 485 SIRMELEKLEKKYEDSTGLPSPEKVIMRRRQTSAVGFG 598
           SIR ELE LEKKYE+ TGLPSPE+V  R+++ + VGFG
Sbjct: 234 SIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFG 271


>ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
           gi|296087647|emb|CBI34903.3| unnamed protein product
           [Vitis vinifera]
          Length = 275

 Score =  220 bits (560), Expect = 4e-55
 Identities = 103/158 (65%), Positives = 127/158 (80%)
 Frame = +2

Query: 125 DTMYKTEGIGLSGPQVGMNVQLMVFNPXXXXXXXXXXXXXNPKVVRYSRKIVAYDEGCLS 304
           D MYKT+GIGLS PQVG+NVQLMVFNP             NP+V +YS+KIV ++EGCLS
Sbjct: 116 DVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLS 175

Query: 305 FPGIYADVERPDSIKVDAQDVTGAKFSVSLSGLRARVFQHEFDHLQGILFFDRMSDEVVD 484
           FPGIYADVERP+S+K+DA+D+TGA+F ++LSGL ARVFQHEFDHLQG LFFDRM++EV+D
Sbjct: 176 FPGIYADVERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLD 235

Query: 485 SIRMELEKLEKKYEDSTGLPSPEKVIMRRRQTSAVGFG 598
           SI   L+ LE+KYED TG PSPE++  R+R+  A GFG
Sbjct: 236 SIHANLQDLERKYEDRTGFPSPERIETRKRRKVAAGFG 273


>gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  219 bits (559), Expect = 5e-55
 Identities = 102/158 (64%), Positives = 128/158 (81%)
 Frame = +2

Query: 125 DTMYKTEGIGLSGPQVGMNVQLMVFNPXXXXXXXXXXXXXNPKVVRYSRKIVAYDEGCLS 304
           D MYKT+GIGLS PQVG+NVQLMVFNP             NPK+ +YS K+V +DEGCLS
Sbjct: 114 DVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLS 173

Query: 305 FPGIYADVERPDSIKVDAQDVTGAKFSVSLSGLRARVFQHEFDHLQGILFFDRMSDEVVD 484
           FPGIYA+V RP S+K+DA+D+TG +FS+SLS L AR+FQHE+DHL+G+LFFDRM+D+V+D
Sbjct: 174 FPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLD 233

Query: 485 SIRMELEKLEKKYEDSTGLPSPEKVIMRRRQTSAVGFG 598
           SIR ELE LEKKYE+ TGLPSPE+V  R+++ + VGFG
Sbjct: 234 SIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFG 271


>ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
           gi|30684999|ref|NP_850821.1| peptide deformylase 1B
           [Arabidopsis thaliana]
           gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName:
           Full=Peptide deformylase 1B, chloroplastic;
           Short=AtDEF2; Short=AtPDF1B; Short=PDF 1B; AltName:
           Full=Polypeptide deformylase; Flags: Precursor
           gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis
           thaliana] gi|15292891|gb|AAK92816.1| unknown protein
           [Arabidopsis thaliana] gi|20465677|gb|AAM20307.1|
           unknown protein [Arabidopsis thaliana]
           gi|332004676|gb|AED92059.1| peptide deformylase 1B
           [Arabidopsis thaliana] gi|332004677|gb|AED92060.1|
           peptide deformylase 1B [Arabidopsis thaliana]
          Length = 273

 Score =  219 bits (559), Expect = 5e-55
 Identities = 102/158 (64%), Positives = 128/158 (81%)
 Frame = +2

Query: 125 DTMYKTEGIGLSGPQVGMNVQLMVFNPXXXXXXXXXXXXXNPKVVRYSRKIVAYDEGCLS 304
           D MYKT+GIGLS PQVG+NVQLMVFNP             NPK+ +YS K+V +DEGCLS
Sbjct: 114 DVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLS 173

Query: 305 FPGIYADVERPDSIKVDAQDVTGAKFSVSLSGLRARVFQHEFDHLQGILFFDRMSDEVVD 484
           FPGIYA+V RP S+K+DA+D+TG +FS+SLS L AR+FQHE+DHL+G+LFFDRM+D+V+D
Sbjct: 174 FPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLD 233

Query: 485 SIRMELEKLEKKYEDSTGLPSPEKVIMRRRQTSAVGFG 598
           SIR ELE LEKKYE+ TGLPSPE+V  R+++ + VGFG
Sbjct: 234 SIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFG 271


>pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) gi|327200559|pdb|3M6O|B Chain
           B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) gi|327200560|pdb|3M6P|A Chain
           A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
           gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of
           Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In
           Complex With Actinonin gi|335892336|pdb|3O3J|A Chain A,
           Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Inhibitor 6b
           gi|335892375|pdb|3PN2|A Chain A, Crystal Structure Of
           Arabidopsis Thaliana Petide Deformylase 1b (Atpdf1b)
           (Crystallized In Peg-550-Mme) gi|335892376|pdb|3PN3|A
           Chain A, Crystal Structure Of Arabidopsis Thaliana
           Petide Deformylase 1b (Atpdf1b) In Complex With
           Inhibitor 21 gi|335892377|pdb|3PN3|B Chain B, Crystal
           Structure Of Arabidopsis Thaliana Petide Deformylase 1b
           (Atpdf1b) In Complex With Inhibitor 21
           gi|335892378|pdb|3PN4|A Chain A, Crystal Structure Of
           Arabidopsis Thaliana Petide Deformylase 1b (Atpdf1b) In
           Complex With Actinonin (Crystallized In Peg-550-Mme)
          Length = 193

 Score =  219 bits (559), Expect = 5e-55
 Identities = 102/158 (64%), Positives = 128/158 (81%)
 Frame = +2

Query: 125 DTMYKTEGIGLSGPQVGMNVQLMVFNPXXXXXXXXXXXXXNPKVVRYSRKIVAYDEGCLS 304
           D MYKT+GIGLS PQVG+NVQLMVFNP             NPK+ +YS K+V +DEGCLS
Sbjct: 34  DVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLS 93

Query: 305 FPGIYADVERPDSIKVDAQDVTGAKFSVSLSGLRARVFQHEFDHLQGILFFDRMSDEVVD 484
           FPGIYA+V RP S+K+DA+D+TG +FS+SLS L AR+FQHE+DHL+G+LFFDRM+D+V+D
Sbjct: 94  FPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLD 153

Query: 485 SIRMELEKLEKKYEDSTGLPSPEKVIMRRRQTSAVGFG 598
           SIR ELE LEKKYE+ TGLPSPE+V  R+++ + VGFG
Sbjct: 154 SIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFG 191