BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00005399
         (5556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]             1731   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...  1731   0.0  
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...  1662   0.0  
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1636   0.0  
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...  1580   0.0  

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 1731 bits (4482), Expect = 0.0
 Identities = 934/1782 (52%), Positives = 1167/1782 (65%), Gaps = 29/1782 (1%)
 Frame = +1

Query: 34   CCEEASQVKICESKTTDGACFLELRFPSNSRLPENCWTFLERYGFRYGKGHSRPLLPSEV 213
            CC+++ QV + E + T+GACFLEL+ PS SR  +  W FL RYG+RYG   SR LLPSEV
Sbjct: 181  CCQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEV 240

Query: 214  DSILRRLPQASKRALSAKGHHPQEGYVLRHLTVPPNCLSVPDIXXXXXXXXXXXXXXLLK 393
              ILRR+P+ +++ L  KG+ PQ+GY+L++L VPPNCLSVPDI              +LK
Sbjct: 241  MEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLK 300

Query: 394  KVLRQVDIIKNSRSGIPNFESHKVETDDLQAAVAQYFEFRGTGKAARDVDSRFGVRKEQN 573
            KVL+Q+++IK SRSG PNFESHK+E ++LQ+++ QY E RGT K +R +D+RFG  KE N
Sbjct: 301  KVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPN 360

Query: 574  ESSTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPFEIAQKITFEERVNQHNM 753
            ESSTKAWLEKM+TLFIRKGSGFSSRSVITGD YK V EIGLPFEIAQ+ITFEERVN HNM
Sbjct: 361  ESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNM 420

Query: 754  EFLQKLVDEKLCLTFKDGSSTYSLSEGSKGHTFLRLGQVVHRKIMDGDIVFINRPPTTHK 933
            + LQ LVDEKLCLT++DG STYSL EGSKGHTFLR GQVVHR+IMDGDIVFINRPPTTHK
Sbjct: 421  KHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK 480

Query: 934  HSLQALSVYVHDDHVVKINPLICGPLSADFDGDCVHVFYPQSLAAKAEVIELFSVEKQLL 1113
            HSLQALSVYVHDDH VKINPLICGPLSADFDGDCVH+FYPQSL AKAEV+ELFSVEKQLL
Sbjct: 481  HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLL 540

Query: 1114 SSHTGNFNLQLASDSLLSLKLMFRTYFFGRAKTQQLSMYSPHLVPEPTLVKSGRSGCFWT 1293
            SSH+GN NLQLA+DSLLSLK++F  YF  +A  QQL M+    +P P L+KS  SG  WT
Sbjct: 541  SSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWT 600

Query: 1294 VLQILKSAIPSSFDCSGDRHLIRKSEILSLEYNRDALPSILSDVVTSTYFGKGPKKVLTF 1473
             LQIL++A+PS FDC G+RH I KS IL ++YNRD L S+++++VTS +  KGP +VL F
Sbjct: 601  ALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKF 660

Query: 1474 FDSLQPLLMENLFSQGFSISLGDFFIPRTTRKKIFLGIQDLSPLLSHLRYKYNESTKLQL 1653
            FDSLQPLLMENLFS+GFS+SL DF IP    + I   ++D+S LL +LR  YNE  +LQ 
Sbjct: 661  FDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQA 720

Query: 1654 ESLLRGLKLPVTNFVLKSSAVGYLIDSKSESALGKVVEQSAFLGLQISNKGKLYSSSLVG 1833
            E+ LR  K+PV NF+L SSA+G LIDSKS+SA+ KVV+Q  FLG Q+S KGK YS +LV 
Sbjct: 721  ENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVE 780

Query: 1834 EMSALFQRKYP-STSRYPSEEYGFVSSCLFDGLDPYQEMVHSISCREVTVRSTRGLTEPG 2010
             M+ LF+ KYP   + YPS E+G + SC F GLDPY+EMVHSIS RE+ VRS+RGL+EPG
Sbjct: 781  GMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPG 840

Query: 2011 TLFKNLMAILRDVVICYDGTVRNVSSTSIVQFEYGFKDGNTFHSEFGAGDPVGVLAATAM 2190
            TLFKNLMAILRDVVICYDGTVRNV S SI+QFEYG K        F AG+PVGVLAATAM
Sbjct: 841  TLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAM 900

Query: 2191 SNPAYKAVLDXXXXXXXXWEMMKEILLCSAKFKNDLSDRRVLLYLNDCDCGRDYCQERAA 2370
            SNPAYKAVLD        WE+MKEILLC   FKNDL DRRV+LYLNDCDCGR YC+E AA
Sbjct: 901  SNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAA 960

Query: 2371 CFLKNQLEKVSLKDVAVEFLIEYGEQETMGEISATEKGLVGHIHLNKSQLDNLGISMSGV 2550
              +KNQL+K SLKD AVEF+IEY +Q  +   S    GLVGHIHLNK  L +L +SM  V
Sbjct: 961  YLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEV 1020

Query: 2551 LDKCEDNVDSFRRKKKLGQLFKRISLSFREYCSFGAS-KTQCPDMHCLSFSFQGVHDEHL 2727
              KCE+ ++SFR+KK +G  FK+I LSFRE C+F  S +++  DM CL F +QG  D++L
Sbjct: 1021 CQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNL 1080

Query: 2728 ERTCHILADTVCPVLLETIIKGDPRISSASIVWISPETTTWVRSLTEKQKGELVIDVAVE 2907
            E+  HILA  +CPVLL+TIIKGD R+ + +I+WISP+TTTW+R+  + +KGEL +D+ +E
Sbjct: 1081 EQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLE 1140

Query: 2908 KESVKQGGDAWRVVMDCCLPVIDLIDTTRTIPYGIKQIQELLGISCAFEQAVQRLSSSVT 3087
            K +VKQ GDAWR+V+D CLPV+ LIDT R+IPY IKQ+QELLGISCAF+QAVQRLS SVT
Sbjct: 1141 KAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVT 1200

Query: 3088 MVTKGVLKDHLVLLANSMTCSGNMIGFNSGGIKAFSRALNIQAPFKEATLFTPRKCFEKA 3267
            MV KGVLK+HL+LLANSMTC+GN+IGFNSGG KA SRALN+Q PF EATLFTPRKCFEKA
Sbjct: 1201 MVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKA 1260

Query: 3268 AENCHKDSLSSIVASCSWGNPVAVGTGTPFDIHWDTREVDLNQPEGVDVYSFLHLLRSTE 3447
            +E CH DSLSSIVASCSWG  V VGTG+ FD+ WDT+E+   Q  G+D+YSFLHL+RS  
Sbjct: 1261 SEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGS 1320

Query: 3448 DNGQIDSSCLGQDIDEFEMEDQ-----PSPVRDSDFEKPDFEDRADFEDNTGN--TSSPG 3606
               + D++CLG ++++  +ED+      SP   S+FEKP FED A+F++   N    S G
Sbjct: 1321 YGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGG 1380

Query: 3607 AWNVEEKKDDHS-----TSWSSW--EKKLEGNDGGQDIPGSTSSPGAWGVKEKKDDPSTS 3765
             W V + K+  +     ++WSSW  +K    +      P  +S    W      DD  T 
Sbjct: 1381 DWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGW------DDKGT- 1433

Query: 3766 WGKKSNENEGHTDVTKSSSPGAWNVKERKDDQXXXXXXXVXXXXXXXXXXXXXGGQVVTE 3945
            WG    +N       + S   +   +  +D +                      G+ + E
Sbjct: 1434 WGTDKAQNTAFRRTHEDSPRSSGRDETFRDGR--------------PQFASSAWGKKIDE 1479

Query: 3946 KSSSPGAWNVEDAKGNQSSSWSLCXXXXXXXXXXXXXXXXQVVTGKSSSPGAWNVKETKD 4125
               +   WN  D K        L                     G SS+ G W   E + 
Sbjct: 1480 ADKT--GWNKNDGKPQMD---KLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQM 1534

Query: 4126 DQXXXXXXXGKKNNEEKRLEDNEGGQVVT--GKSSGPGA-WNVK-------ETKDDQSAS 4275
            +          +++ +  L ++   Q  T  G  S  G  W  +       + +D    S
Sbjct: 1535 EVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKS 1594

Query: 4276 WSSWGTXXXXXXXXXXXXGGQVVTGKSSSPGAWNVKETKDDQSASWSSWGKRNNEEKKME 4455
            WSS                            + NV + + +Q AS   W           
Sbjct: 1595 WSS----------------------------SHNVMKEQSNQPASTHGW----------- 1615

Query: 4456 DNVGGQGVTGKSSSPGAWNVK--EAKDDQSASWSSWGKKNNEEAGKTTNEXXXXXXXXXX 4629
            D+ G +G          WN +    K+DQS S   WG  N +      N+          
Sbjct: 1616 DSPGAKG-WNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQ------NQLPSSQGWGSP 1668

Query: 4630 XXXAGQLQETQATISEASSNDWGKFDTTDEKESSTPNWRSNARGWQSSGXXXXXXXXXXX 4809
               AG   ETQ        + WG+      +   +  W SN   W++             
Sbjct: 1669 NAGAGHESETQ--------SQWGQPSGKKSRPEGSRGWGSNNTEWKNKKNRPNKPQGPLN 1720

Query: 4810 XSADPSSAVRAFTVTRQRLDAFTAXXXXXXXXXXXXMQNIRRIMHQSGYTDCQPLTPEDQ 4989
               D  SA   FT TRQR+D FT+            MQ+IRRIMHQ+GY D  PL+ +DQ
Sbjct: 1721 ---DDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQ 1777

Query: 4990 SYIIENVLNHHPDKAVKMGVGIDFIMVSKHANFQENRCLHVVSTDKSQQDFSYRKCLDNF 5169
            SYI++ V N+HPDKAVKMG GID++MVS+H++F E+RC +VVSTD  ++DFSYRKCL+NF
Sbjct: 1778 SYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENF 1837

Query: 5170 IKEKYPEKAEEFLAKYFKKRQPQQPGFNKESGNP-SGWNKDR 5292
            IKEKYP+ AE F+ KYF  R+P+  G  + S  P  G N+++
Sbjct: 1838 IKEKYPDNAETFIGKYF--RRPRAGGNRERSVIPEDGGNREQ 1877


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1731 bits (4482), Expect = 0.0
 Identities = 934/1782 (52%), Positives = 1167/1782 (65%), Gaps = 29/1782 (1%)
 Frame = +1

Query: 34   CCEEASQVKICESKTTDGACFLELRFPSNSRLPENCWTFLERYGFRYGKGHSRPLLPSEV 213
            CC+++ QV + E + T+GACFLEL+ PS SR  +  W FL RYG+RYG   SR LLPSEV
Sbjct: 121  CCQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEV 180

Query: 214  DSILRRLPQASKRALSAKGHHPQEGYVLRHLTVPPNCLSVPDIXXXXXXXXXXXXXXLLK 393
              ILRR+P+ +++ L  KG+ PQ+GY+L++L VPPNCLSVPDI              +LK
Sbjct: 181  MEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLK 240

Query: 394  KVLRQVDIIKNSRSGIPNFESHKVETDDLQAAVAQYFEFRGTGKAARDVDSRFGVRKEQN 573
            KVL+Q+++IK SRSG PNFESHK+E ++LQ+++ QY E RGT K +R +D+RFG  KE N
Sbjct: 241  KVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPN 300

Query: 574  ESSTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPFEIAQKITFEERVNQHNM 753
            ESSTKAWLEKM+TLFIRKGSGFSSRSVITGD YK V EIGLPFEIAQ+ITFEERVN HNM
Sbjct: 301  ESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNM 360

Query: 754  EFLQKLVDEKLCLTFKDGSSTYSLSEGSKGHTFLRLGQVVHRKIMDGDIVFINRPPTTHK 933
            + LQ LVDEKLCLT++DG STYSL EGSKGHTFLR GQVVHR+IMDGDIVFINRPPTTHK
Sbjct: 361  KHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK 420

Query: 934  HSLQALSVYVHDDHVVKINPLICGPLSADFDGDCVHVFYPQSLAAKAEVIELFSVEKQLL 1113
            HSLQALSVYVHDDH VKINPLICGPLSADFDGDCVH+FYPQSL AKAEV+ELFSVEKQLL
Sbjct: 421  HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLL 480

Query: 1114 SSHTGNFNLQLASDSLLSLKLMFRTYFFGRAKTQQLSMYSPHLVPEPTLVKSGRSGCFWT 1293
            SSH+GN NLQLA+DSLLSLK++F  YF  +A  QQL M+    +P P L+KS  SG  WT
Sbjct: 481  SSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWT 540

Query: 1294 VLQILKSAIPSSFDCSGDRHLIRKSEILSLEYNRDALPSILSDVVTSTYFGKGPKKVLTF 1473
             LQIL++A+PS FDC G+RH I KS IL ++YNRD L S+++++VTS +  KGP +VL F
Sbjct: 541  ALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKF 600

Query: 1474 FDSLQPLLMENLFSQGFSISLGDFFIPRTTRKKIFLGIQDLSPLLSHLRYKYNESTKLQL 1653
            FDSLQPLLMENLFS+GFS+SL DF IP    + I   ++D+S LL +LR  YNE  +LQ 
Sbjct: 601  FDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQA 660

Query: 1654 ESLLRGLKLPVTNFVLKSSAVGYLIDSKSESALGKVVEQSAFLGLQISNKGKLYSSSLVG 1833
            E+ LR  K+PV NF+L SSA+G LIDSKS+SA+ KVV+Q  FLG Q+S KGK YS +LV 
Sbjct: 661  ENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVE 720

Query: 1834 EMSALFQRKYP-STSRYPSEEYGFVSSCLFDGLDPYQEMVHSISCREVTVRSTRGLTEPG 2010
             M+ LF+ KYP   + YPS E+G + SC F GLDPY+EMVHSIS RE+ VRS+RGL+EPG
Sbjct: 721  GMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPG 780

Query: 2011 TLFKNLMAILRDVVICYDGTVRNVSSTSIVQFEYGFKDGNTFHSEFGAGDPVGVLAATAM 2190
            TLFKNLMAILRDVVICYDGTVRNV S SI+QFEYG K        F AG+PVGVLAATAM
Sbjct: 781  TLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAM 840

Query: 2191 SNPAYKAVLDXXXXXXXXWEMMKEILLCSAKFKNDLSDRRVLLYLNDCDCGRDYCQERAA 2370
            SNPAYKAVLD        WE+MKEILLC   FKNDL DRRV+LYLNDCDCGR YC+E AA
Sbjct: 841  SNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAA 900

Query: 2371 CFLKNQLEKVSLKDVAVEFLIEYGEQETMGEISATEKGLVGHIHLNKSQLDNLGISMSGV 2550
              +KNQL+K SLKD AVEF+IEY +Q  +   S    GLVGHIHLNK  L +L +SM  V
Sbjct: 901  YLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEV 960

Query: 2551 LDKCEDNVDSFRRKKKLGQLFKRISLSFREYCSFGAS-KTQCPDMHCLSFSFQGVHDEHL 2727
              KCE+ ++SFR+KK +G  FK+I LSFRE C+F  S +++  DM CL F +QG  D++L
Sbjct: 961  CQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNL 1020

Query: 2728 ERTCHILADTVCPVLLETIIKGDPRISSASIVWISPETTTWVRSLTEKQKGELVIDVAVE 2907
            E+  HILA  +CPVLL+TIIKGD R+ + +I+WISP+TTTW+R+  + +KGEL +D+ +E
Sbjct: 1021 EQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLE 1080

Query: 2908 KESVKQGGDAWRVVMDCCLPVIDLIDTTRTIPYGIKQIQELLGISCAFEQAVQRLSSSVT 3087
            K +VKQ GDAWR+V+D CLPV+ LIDT R+IPY IKQ+QELLGISCAF+QAVQRLS SVT
Sbjct: 1081 KAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVT 1140

Query: 3088 MVTKGVLKDHLVLLANSMTCSGNMIGFNSGGIKAFSRALNIQAPFKEATLFTPRKCFEKA 3267
            MV KGVLK+HL+LLANSMTC+GN+IGFNSGG KA SRALN+Q PF EATLFTPRKCFEKA
Sbjct: 1141 MVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKA 1200

Query: 3268 AENCHKDSLSSIVASCSWGNPVAVGTGTPFDIHWDTREVDLNQPEGVDVYSFLHLLRSTE 3447
            +E CH DSLSSIVASCSWG  V VGTG+ FD+ WDT+E+   Q  G+D+YSFLHL+RS  
Sbjct: 1201 SEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGS 1260

Query: 3448 DNGQIDSSCLGQDIDEFEMEDQ-----PSPVRDSDFEKPDFEDRADFEDNTGN--TSSPG 3606
               + D++CLG ++++  +ED+      SP   S+FEKP FED A+F++   N    S G
Sbjct: 1261 YGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGG 1320

Query: 3607 AWNVEEKKDDHS-----TSWSSW--EKKLEGNDGGQDIPGSTSSPGAWGVKEKKDDPSTS 3765
             W V + K+  +     ++WSSW  +K    +      P  +S    W      DD  T 
Sbjct: 1321 DWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGW------DDKGT- 1373

Query: 3766 WGKKSNENEGHTDVTKSSSPGAWNVKERKDDQXXXXXXXVXXXXXXXXXXXXXGGQVVTE 3945
            WG    +N       + S   +   +  +D +                      G+ + E
Sbjct: 1374 WGTDKAQNTAFRRTHEDSPRSSGRDETFRDGR--------------PQFASSAWGKKIDE 1419

Query: 3946 KSSSPGAWNVEDAKGNQSSSWSLCXXXXXXXXXXXXXXXXQVVTGKSSSPGAWNVKETKD 4125
               +   WN  D K        L                     G SS+ G W   E + 
Sbjct: 1420 ADKT--GWNKNDGKPQMD---KLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQM 1474

Query: 4126 DQXXXXXXXGKKNNEEKRLEDNEGGQVVT--GKSSGPGA-WNVK-------ETKDDQSAS 4275
            +          +++ +  L ++   Q  T  G  S  G  W  +       + +D    S
Sbjct: 1475 EVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKS 1534

Query: 4276 WSSWGTXXXXXXXXXXXXGGQVVTGKSSSPGAWNVKETKDDQSASWSSWGKRNNEEKKME 4455
            WSS                            + NV + + +Q AS   W           
Sbjct: 1535 WSS----------------------------SHNVMKEQSNQPASTHGW----------- 1555

Query: 4456 DNVGGQGVTGKSSSPGAWNVK--EAKDDQSASWSSWGKKNNEEAGKTTNEXXXXXXXXXX 4629
            D+ G +G          WN +    K+DQS S   WG  N +      N+          
Sbjct: 1556 DSPGAKG-WNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQ------NQLPSSQGWGSP 1608

Query: 4630 XXXAGQLQETQATISEASSNDWGKFDTTDEKESSTPNWRSNARGWQSSGXXXXXXXXXXX 4809
               AG   ETQ        + WG+      +   +  W SN   W++             
Sbjct: 1609 NAGAGHESETQ--------SQWGQPSGKKSRPEGSRGWGSNNTEWKNKKNRPNKPQGPLN 1660

Query: 4810 XSADPSSAVRAFTVTRQRLDAFTAXXXXXXXXXXXXMQNIRRIMHQSGYTDCQPLTPEDQ 4989
               D  SA   FT TRQR+D FT+            MQ+IRRIMHQ+GY D  PL+ +DQ
Sbjct: 1661 ---DDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQ 1717

Query: 4990 SYIIENVLNHHPDKAVKMGVGIDFIMVSKHANFQENRCLHVVSTDKSQQDFSYRKCLDNF 5169
            SYI++ V N+HPDKAVKMG GID++MVS+H++F E+RC +VVSTD  ++DFSYRKCL+NF
Sbjct: 1718 SYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENF 1777

Query: 5170 IKEKYPEKAEEFLAKYFKKRQPQQPGFNKESGNP-SGWNKDR 5292
            IKEKYP+ AE F+ KYF  R+P+  G  + S  P  G N+++
Sbjct: 1778 IKEKYPDNAETFIGKYF--RRPRAGGNRERSVIPEDGGNREQ 1817


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 1662 bits (4305), Expect = 0.0
 Identities = 920/1885 (48%), Positives = 1185/1885 (62%), Gaps = 108/1885 (5%)
 Frame = +1

Query: 1    KNISTLERVFS-CCEEASQVKICESKTTDGACFLELRFPSNSRLPENCWTFLERYGFRYG 177
            KNI   ER+ S CCE+ASQV I E+K  DGA +L+L+ PS + L E  W FLERYGFRYG
Sbjct: 109  KNIGFAERLLSSCCEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYG 168

Query: 178  KGHSRPLLPSEVDSILRRLPQASKRALSAKGHHPQEGYVLRHLTVPPNCLSVPDIXXXXX 357
               +R LLP EV  +L+++P  +++ L+ +G++PQ+GY+L++L VPPNCLSVP+I     
Sbjct: 169  DNFTRTLLPCEVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVT 228

Query: 358  XXXXXXXXXLLKKVLRQVDIIKNSRSGIPNFESHKVETDDLQAAVAQYFEFRGTGKAARD 537
                     +LKK+L+QV+IIK SRSG PNFESH+VE +DLQ AV QY + RGT KA+R 
Sbjct: 229  VMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRG 288

Query: 538  VDSRFGVRKEQNESSTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPFEIAQK 717
            +D+RFGV KE N+ STKAWLEKM+TLFIRKGSGFSSRSVITGD YK V EIG+PFE+AQ+
Sbjct: 289  IDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQR 348

Query: 718  ITFEERVNQHNMEFLQKLVDEKLCLTFKDGSSTYSLSEGSKGHTFLRLGQVVHRKIMDGD 897
            ITFEERV+ HN+ +LQ+LVD+KLCLT++DGSS YSL EGS GHT+L+ GQ+VHR+IMDGD
Sbjct: 349  ITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGD 408

Query: 898  IVFINRPPTTHKHSLQALSVYVHDDHVVKINPLICGPLSADFDGDCVHVFYPQSLAAKAE 1077
            IVFINRPPTTHKHSLQAL VY+HDDHVVKINPLICGPLSADFDGDC+H+FYPQS+AAKAE
Sbjct: 409  IVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAE 468

Query: 1078 VIELFSVEKQLLSSHTGNFNLQLASDSLLSLKLMFRTYFFGRAKTQQLSMYSPHLVPEPT 1257
            V+ LFSVEKQLLSSH+GN NLQLA+DSLLSLK+MFR YF G+A  QQL+M+    +P P 
Sbjct: 469  VLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPA 528

Query: 1258 LVKSGRSGCFWTVLQILKSAIPSSFDCSGDRHLIRKSEILSLEYNRDALPSILSDVVTST 1437
            L+        WT LQIL++ +P+SFDC GD +LI+ S  L  +++RDA+PS++++++TS 
Sbjct: 529  LLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSI 588

Query: 1438 YFGKGPKKVLTFFDSLQPLLMENLFSQGFSISLGDFFIPRTTRKKIFLGIQDLSPLLSHL 1617
            +F KGP++VL FFDSLQPLLME++FS+GFS+ L D+ +P    + +   IQ LSPLL  L
Sbjct: 589  FFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQL 648

Query: 1618 RYKYNESTKLQLESLLRGLKLPVTNFVLKSSAVGYLIDSKSESALGKVVEQSAFLGLQIS 1797
            R  +NE  +LQLE+ LR +K+P TNF+LK S++G L DSKSESA+ KVV+Q  FLGLQ+S
Sbjct: 649  RSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLS 708

Query: 1798 NKGKLYSSSLVGEMSALFQRKYPSTS-RYPSEEYGFVSSCLFDGLDPYQEMVHSISCREV 1974
            +KG+ YS SL+ ++++LF  +Y S    YPS E+G V  C F GLDPY+EMVHSIS REV
Sbjct: 709  DKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREV 768

Query: 1975 TVRSTRGLTEPGTLFKNLMAILRDVVICYDGTVRNVSSTSIVQFEYGFKDGNTF-HSEFG 2151
             VRS+RGLTEPGTLFKNLMAILRDVVICYDGTVRNV S SI+Q EYG K G    +S F 
Sbjct: 769  MVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFP 828

Query: 2152 AGDPVGVLAATAMSNPAYKAVLDXXXXXXXXWEMMKEILLCSAKFKNDLSDRRVLLYLND 2331
             G+PVGVLAATAMS PAYKAVLD        W+MMKEILLC   FKN+  DRRV+LYLN+
Sbjct: 829  PGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNN 888

Query: 2332 CDCGRDYCQERAACFLKNQLEKVSLKDVAVEFLIEYGEQETMGEISATEKGLVGHIHLNK 2511
            C CGR YC E AA  +K+ L+KV+LKD A++F+IEY  Q T    S    GLVGH+HLN+
Sbjct: 889  CACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTP---SGLGPGLVGHVHLNR 945

Query: 2512 SQLDNLGISMSGVLDKCEDNVDSFRRKKKLGQLFKRISLSFREYCSFGA-SKTQCPDMHC 2688
              L  L I M+ VL +C++ + SF++KKK  ++   +  S  E+C+F   +  +  DM C
Sbjct: 946  MLLKELNIDMTEVLRRCQETMSSFKKKKK--KIAHALRFSISEHCAFHQWNGEESIDMPC 1003

Query: 2689 LSFSFQGVHDEHLERTCHILADTVCPVLLETIIKGDPRISSASIVWISPETTTWVRSLTE 2868
            L F  Q   D HLERT HILAD V P+L ETIIKGDPRI SAS++WISP++T+W ++ + 
Sbjct: 1004 LIFWHQ-TRDVHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSR 1062

Query: 2869 KQKGELVIDVAVEKESVKQGGDAWRVVMDCCLPVIDLIDTTRTIPYGIKQIQELLGISCA 3048
             Q GEL +DV +EK +VKQ GDAWR V+DCCLPV+ LIDT R++PY IKQ+QELLGISCA
Sbjct: 1063 WQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCA 1122

Query: 3049 FEQAVQRLSSSVTMVTKGVLKDHLVLLANSMTCSGNMIGFNSGGIKAFSRALNIQAPFKE 3228
            F+Q +QRLS SV+MV+KGVL DHL+LLANSMTC+GNMIGFNSGG KA SRALNIQ PF E
Sbjct: 1123 FDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTE 1182

Query: 3229 ATLFTPRKCFEKAAENCHKDSLSSIVASCSWGNPVAVGTGTPFDIHWDTREVDLNQPEGV 3408
            ATLFTPRKCFEKAAE CHKDSLSSIVASCSWG  VAVGTG+ FDI WD +E+   Q + V
Sbjct: 1183 ATLFTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVV 1242

Query: 3409 DVYSFLHLLRSTEDNGQIDSSCLGQDIDEFEMEDQ-----PSPVRDSDFEKPDFEDRADF 3573
            DVY+FLH++RS +   +  S+CLG++I++  +ED+      SP   S  EKP FED A+F
Sbjct: 1243 DVYNFLHMVRSGKSE-EPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEF 1301

Query: 3574 EDNTGNTSSPGAWNVEEKKDDHSTSWSSWEKKLEGNDGGQDIPGSTSSP-GAWGVKEKKD 3750
            E    N      W         ST    W    E N+ G+    S  +    WG K + D
Sbjct: 1302 EHCLDNYPGESKWEKAPSLGAVSTGGGQW----ESNENGKATNSSDGNDWSGWGRKAEPD 1357

Query: 3751 ---------------DPSTSWGKK----SNEN------------EGHTDVTKSSSPGAWN 3837
                           D ++SWG K    SN+N            +  T + K+   G W+
Sbjct: 1358 VTVTNAQENTSNSAWDTTSSWGNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWD 1417

Query: 3838 V-----KERKDDQXXXXXXXVXXXXXXXXXXXXXGGQVV----TEKSSSPGAWNVEDAKG 3990
                   + KDD                        Q       E +S  G W  ED   
Sbjct: 1418 SASTWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGW--EDKAW 1475

Query: 3991 NQSSS-----WSLCXXXXXXXXXXXXXXXXQVVTGKSS---SPGAWNVKETKDDQXXXXX 4146
            ++ +S     WS                  Q V+ K++   S G W      D Q     
Sbjct: 1476 SRGTSKTEDNWS----SQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAGW 1531

Query: 4147 XXGKKNNEEKRLEDNEGGQVVTGKSSGPGAWNVKETKDDQSASWSSWGT-----XXXXXX 4311
              G+ + + +++ D                W+ K T+  +S   SSWG+           
Sbjct: 1532 NDGQASMDREKVSDR---------------WDRKATQKLESHQTSSWGSPTVGDSKDSFP 1576

Query: 4312 XXXXXXGGQVVT---GKSSSP--------GAWNVKETKD-------DQSASWSSWGKRNN 4437
                     VV     +  SP         AW  ++++D       +  ++ S WG +  
Sbjct: 1577 SKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIE 1636

Query: 4438 EEKKMEDNVGGQGVTGKSSSPGAWNVKEAKD---------DQSASW-------SSWG--K 4563
              +  +          KSS    W+ +E  D         + S SW        SWG  +
Sbjct: 1637 SNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQ 1696

Query: 4564 KNNEEAGKTTNEXXXXXXXXXXXXXAGQLQETQATISEASSNDWGKFDTTDEKESS---- 4731
            + +EE  + + +                  E Q   S   S+ WG    + E+ SS    
Sbjct: 1697 RASEECSRESQDDSSTQFSQLKPPETSLGWEQQK--SPEVSHGWGSHKESSEQTSSHGWD 1754

Query: 4732 -----TPNWRSNARGWQSSGXXXXXXXXXXXXSADPSSAVRAFTVTRQRLDAFTAXXXXX 4896
                 +  W  NA  W++              S D ++    +T + QRLD FT+     
Sbjct: 1755 KKNQGSKGWGGNAGEWKN---RKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDI 1811

Query: 4897 XXXXXXXMQNIRRIMHQSGYTDCQPLTPEDQSYIIENVLNHHPDKAVKMGVGIDFIMVSK 5076
                   MQ+IR++MHQSGY D  PL+ EDQS+++++V N HPDKA KMG GID  MVS+
Sbjct: 1812 LADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSR 1871

Query: 5077 HANFQENRCLHVVSTDKSQQDFSYRKCLDNFIKEKYPEKAEEFLAKYFKKRQPQQPGFNK 5256
            H++FQE+RC +VV+TD  ++DFSYRKCLDNFIK KYP+ AE F+AKYF+K +P +     
Sbjct: 1872 HSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR----- 1926

Query: 5257 ESGNPSGWNKDRRPPSGPGWNKDIG 5331
                    N+DR P S    NK IG
Sbjct: 1927 --------NRDRNPASEENENKSIG 1943


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 1636 bits (4237), Expect = 0.0
 Identities = 918/1915 (47%), Positives = 1184/1915 (61%), Gaps = 138/1915 (7%)
 Frame = +1

Query: 1    KNISTLERVFS-CCEEASQVKICESKTTDGACFLELRFPSNSRLPENCWTFLERYGFRYG 177
            KNI   ER+ S CCE+ASQV I E+K  DGA +L+L+ PS + L E  W FLERYGFRYG
Sbjct: 139  KNIGFAERLLSSCCEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYG 198

Query: 178  KGHSRPLLPSEVDSILRRLPQASKRALSAKGHHPQEGYVLRHLTVPPNCLSVPDIXXXXX 357
               +R LL   V  +L+++P  +++ L+ +G++PQ+GY+L++L VPPNCLSVP+I     
Sbjct: 199  DNFTRTLLSVMVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVT 258

Query: 358  XXXXXXXXXLLKKVLRQVDIIKNSRSGIPNFESHKVETDDLQAAVAQYFEFRGTGKAARD 537
                     +LKK+L+QV+IIK SRSG PNFESH+VE +DLQ AV QY + RGT KA+R 
Sbjct: 259  VMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRG 318

Query: 538  VDSRFGVRKEQNESSTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPFEIAQK 717
            +D+RFGV KE N+ STKAWLEKM+TLFIRKGSGFSSRSVITGD YK V EIG+PFE+AQ+
Sbjct: 319  IDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQR 378

Query: 718  ITFEERVNQHNMEFLQKLVDEKLCLTFKDGSSTYSLSEGSKGHTFLRLGQVVHRKIMDGD 897
            ITFEERV+ HN+ +LQ+LVD+KLCLT++DGSS YSL EGS GHT+L+ GQ+VHR+IMDGD
Sbjct: 379  ITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGD 438

Query: 898  IVFINRPPTTHKHSLQALSVYVHDDHVVKINPLICGPLSADFDGDCVHVFYPQSLAAKAE 1077
            IVFINRPPTTHKHSLQAL VY+HDDHVVKINPLICGPLSADFDGDC+H+FYPQS+AAKAE
Sbjct: 439  IVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAE 498

Query: 1078 VIELFSVEKQLLSSHTGNFNLQLASDSLLSLKLMFRTYFFGRAKTQQLSMYSPHLVPEPT 1257
            V+ LFSVEKQLLSSH+GN NLQLA+DSLLSLK+MFR YF G+A  QQL+M+    +P P 
Sbjct: 499  VLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPA 558

Query: 1258 LVKSGRSGCFWTVLQILKSAIPSSFDCSGDRHLIRKSEILSLEYNRDALPSILSDVVTST 1437
            L+        WT LQIL++ +P+SFDC GD +LI+ S  L  +++RDA+PS++++++TS 
Sbjct: 559  LLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSI 618

Query: 1438 YFGKGPKKVLTFFDSLQPLLMENLFSQGFSISLGDFFIPRTTRKKIFLGIQDLSPLLSHL 1617
            +F KGP++VL FFDSLQPLLME++FS+GFS+ L D+ +P    + +   IQ LSPLL  L
Sbjct: 619  FFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQL 678

Query: 1618 RYKYNESTKLQLESLLRGLKLPVTNFVLKSSAVGYLIDSKSESALGKVVEQSAFLGLQIS 1797
            R  +NE  +LQLE+ LR +K+P TNF+LK S++G L DSKSESA+ KVV+Q  FLGLQ+S
Sbjct: 679  RSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLS 738

Query: 1798 NKGKLYSSSLVGEMSALFQRKYPSTS-RYPSEEYGFVSSCLFDGLDPYQEMVHSISCREV 1974
            +KG+ YS SL+ ++++LF  +Y S    YPS E+G V  C F GLDPY+EMVHSIS REV
Sbjct: 739  DKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREV 798

Query: 1975 TVRSTRGLTEPGTLFKNLMAILRDVVICYDGTVRNVSSTSIVQFEYGFKDGNTF-HSEFG 2151
             VRS+RGLTEPGTLFKNLMAILRDVVICYDGTVRNV S SI+Q EYG K G    +S F 
Sbjct: 799  MVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFP 858

Query: 2152 AGDPVGVLAATAMSNPAYKAVLDXXXXXXXXWEMMKEILLCSAKFKNDLSDRRVLLYLND 2331
             G+PVGVLAATAMS PAYKAVLD        W+MMKEILLC   FKN+  DRRV+LYLN+
Sbjct: 859  PGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNN 918

Query: 2332 CDCGRDYCQERAACFLKNQLEKVSLKDVAVEFLIEYGEQETMGEISATEKGLVGHIHLNK 2511
            C CGR YC E AA  +K+ L+KV+LKD A++F+IEY  Q T    S    GLVGH+HLN+
Sbjct: 919  CACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTP---SGLGPGLVGHVHLNR 975

Query: 2512 SQ--LDNLGISMSGVLDKCEDNVDSFRRKKKLGQLFKRISLSFREYCSFGA-SKTQCPDM 2682
             +  L  L I M+ VL +C++ + SF++KKK  ++   +  S  E+C+F   +  +  DM
Sbjct: 976  VRMLLKELNIDMTEVLRRCQETMSSFKKKKK--KIAHALRFSISEHCAFHQWNGEESIDM 1033

Query: 2683 HCLSFSFQGVHDEHLERTCHILADTVCPVLLETIIKGDPRISSASIVWISPETTTWVRSL 2862
             CL F  Q   D HLERT HILAD V P+L ETIIKGDPRI SAS++WISP++T+W ++ 
Sbjct: 1034 PCLIFWHQ-TRDVHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNP 1092

Query: 2863 TEKQKGELVIDVAVEKESVKQGGDAWRVVMDCCLPVIDLIDTTRTIPYGIKQIQELLGIS 3042
            +  Q GEL +DV +EK +VKQ GDAWR V+DCCLPV+ LIDT R++PY IKQ+QELLGIS
Sbjct: 1093 SRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGIS 1152

Query: 3043 CAFEQAVQRLSSSVTMVTKGVLKDHLVLLANSMTCSGNMIGFNSGGIKAFSRALNIQAPF 3222
            CAF+Q +QRLS SV+MV+KGVL DHL+LLANSMTC+GNMIGFNSGG KA SRALNIQ PF
Sbjct: 1153 CAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPF 1212

Query: 3223 KEATLF----------------------------TPRKCFEKAAENCHKDSLSSIVASCS 3318
             EATLF                            TPRKCFEKAAE CHKDSLSSIVASCS
Sbjct: 1213 TEATLFVSPFHSLVLSLYMKFNFFFLFFLNGXYTTPRKCFEKAAEKCHKDSLSSIVASCS 1272

Query: 3319 WGNPVAVGTGTPFDIHWDTREVDLNQPEGVDVYSFLHLLRSTEDNGQIDSSCLGQDIDEF 3498
            WG  VAVGTG+ FDI WD +E+   Q + VDVY+FLH++RS +   +  S+CLG++I++ 
Sbjct: 1273 WGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSGKSE-EPTSACLGEEIEDI 1331

Query: 3499 EMEDQ-----PSPVRDSDFEKPDFEDRADFEDNTGNTSSPGAWNVEEKKDDHSTSWSSWE 3663
             +ED+      SP   S  EKP FED A+FE    N      W         ST    W 
Sbjct: 1332 MVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLDNYPGESKWEKAPSLGAVSTGGGQW- 1390

Query: 3664 KKLEGNDGGQDIPGSTSSP-GAWGVKEKKD---------------DPSTSWGKK----SN 3783
               E N+ G+    S  +    WG K + D               D ++SWG K    SN
Sbjct: 1391 ---ESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSWGNKATNSSN 1447

Query: 3784 EN------------EGHTDVTKSSSPGAWNV-----KERKDDQXXXXXXXVXXXXXXXXX 3912
            +N            +  T + K+   G W+       + KDD                  
Sbjct: 1448 DNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTKDDSFKRETAPKKSSQWSGLQ 1507

Query: 3913 XXXXGGQVV----TEKSSSPGAWNVEDAKGNQSSS-----WSLCXXXXXXXXXXXXXXXX 4065
                  Q       E +S  G W  ED   ++ +S     WS                  
Sbjct: 1508 KDKAETQDAFHKKAEMASKSGGW--EDKAWSRGTSKTEDNWS----SQVKDKAESFQVQV 1561

Query: 4066 QVVTGKSS---SPGAWNVKETKDDQXXXXXXXGKKNNEEKRLEDNEGGQVVTGKSSGPGA 4236
            Q V+ K++   S G W      D Q       G+ + + +++ D                
Sbjct: 1562 QEVSSKTNGWGSTGGWTKNSGGDHQSEAGWNDGQASMDREKVSDR--------------- 1606

Query: 4237 WNVKETKDDQSASWSSWGT-----XXXXXXXXXXXXGGQVVT---GKSSSP--------G 4368
            W+ K T+  +S   SSWG+                    VV     +  SP         
Sbjct: 1607 WDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGND 1666

Query: 4369 AWNVKETKD-------DQSASWSSWGKRNNEEKKMEDNVGGQGVTGKSSSPGAWNVKEAK 4527
            AW  ++++D       +  ++ S WG +    +  +          KSS    W+ +E  
Sbjct: 1667 AWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKT 1726

Query: 4528 D---------DQSASW-------SSWG--KKNNEEAGKTTNEXXXXXXXXXXXXXAGQLQ 4653
            D         + S SW        SWG  ++ +EE  + + +                  
Sbjct: 1727 DKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGW 1786

Query: 4654 ETQATISEASSNDWGKFDTTDEKESS---------TPNWRSNARGWQSSGXXXXXXXXXX 4806
            E Q   S   S+ WG    + E+ SS         +  W  NA  W++            
Sbjct: 1787 EQQK--SPEVSHGWGSNKESSEQTSSHGWDKKNQGSKGWGGNAGEWKN---RKNRPPKSP 1841

Query: 4807 XXSADPSSAVRAFTVTRQRLDAFTAXXXXXXXXXXXXMQNIRRIMHQSGYTDCQPLTPED 4986
              S D ++    +T + QRLD FT+            MQ+IR++MHQSGY D  PL+ ED
Sbjct: 1842 GMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAED 1901

Query: 4987 QSYIIENVLNHHPDKAVKMGVGIDFIMVSKHANFQENRCLHVVSTDKSQQDFSYRKCLDN 5166
            QS+++++V N HPDKA KMG GID  MVS+H++FQE+RC +VV+TD  ++DFSYRKCLDN
Sbjct: 1902 QSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDN 1961

Query: 5167 FIKEKYPEKAEEFLAKYFKKRQPQQPGFNKESGNPSGWNKDRRPPSGPGWNKDIG 5331
            FIK KYP+ AE F+AKYF+K +P +             N+DR P S    NK IG
Sbjct: 1962 FIKGKYPDLAEMFVAKYFRKPRPNR-------------NRDRNPASEENENKSIG 2003


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2020

 Score = 1580 bits (4092), Expect = 0.0
 Identities = 885/1906 (46%), Positives = 1147/1906 (60%), Gaps = 175/1906 (9%)
 Frame = +1

Query: 34   CCEE--ASQVKICESKTTDGACFLELRFPSNSRLPENCWTFLERYGFRYGKGHSRPLLPS 207
            CC++  A+ V I E KT+DGAC+L L+  S S++ +  W+FLE+YG+RY    +R LLP 
Sbjct: 124  CCQDVNAALVSIREVKTSDGACYLALKV-SKSKIHDGFWSFLEKYGYRYEGDETRALLPC 182

Query: 208  EVDSILRRLPQASKRALSAKGHHPQEGYVLRHLTVPPNCLSVPDIXXXXXXXXXXXXXXL 387
            E   I++R+P  +K+ L+ KG  PQ+GYVL++L VPPNCLSVP++              +
Sbjct: 183  EAMEIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSSDPSMTI 242

Query: 388  LKKVLRQVDIIKNSRSGIPNFESHKVETDDLQAAVAQYFEFRGTGKAARDVDSRFGVRKE 567
            L+K+LR+V+IIK+SRSG PNFESH VE +DLQ+ V QYF+ RGT K ARD+++ FGV KE
Sbjct: 243  LRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVNKE 302

Query: 568  QNESSTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPFEIAQKITFEERVNQH 747
               SSTKAWLEKM+TLFIRKGSGFSSR+VITGD YK + E+G+P E+AQ+ITFEERVN H
Sbjct: 303  LTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVNIH 362

Query: 748  NMEFLQKLVDEKLCLTFKDGSSTYSLSEGSKGHTFLRLGQVVHRKIMDGDIVFINRPPTT 927
            N+ +LQKLVDE LCLT+K+G STYSL EGSKGH +L+ GQ+VHR+IMDGDIVFINRPPTT
Sbjct: 363  NIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTT 422

Query: 928  HKHSLQALSVYVHDDHVVKINPLICGPLSADFDGDCVHVFYPQSLAAKAEVIELFSVEKQ 1107
            HKHSLQAL VY+H+DH VKINPLICGPL ADFDGDCVH+FYPQSLAAKAEV+ELF+VE Q
Sbjct: 423  HKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVENQ 482

Query: 1108 LLSSHTGNFNLQLASDSLLSLKLMFRTYFFGRAKTQQLSMYSPHLVPEPTLVKSGRSGCF 1287
            LLSSH+GN NLQL++DSLL+LK++ +  F GRA   QL+M+    +P P L+K+      
Sbjct: 483  LLSSHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDDAC 542

Query: 1288 WTVLQILKSAIPSSFDCSGDRHLIRKSEILSLEYNRDALPSILSDVVTSTYFGKGPKKVL 1467
            WT +QIL+ A+P  FDC+G R+LIR+SEIL  +++RDALP+ ++++  S +FGKGP + L
Sbjct: 543  WTSIQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGPMEAL 602

Query: 1468 TFFDSLQPLLMENLFSQGFSISLGDFFIPRTTRKKIFLGIQDLSPLLSHLRYKYNESTKL 1647
             FFD LQP LME+LF++GFS+SL +F I R  ++ I   I   S LL  LR  YNE    
Sbjct: 603  KFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQ 662

Query: 1648 QLESLLRGLKLPVTNFVLKSSAVGYLIDSKSESALGKVVEQSAFLGLQISNKGKLYSSSL 1827
            QLE  ++ ++LP+ NF LKS+ +G LIDSKS+S + KVV+Q  FLG Q+ ++G+ YS  L
Sbjct: 663  QLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSKGL 722

Query: 1828 VGEMSALFQRK--YPSTSRYPSEEYGFVSSCLFDGLDPYQEMVHSISCREVTVRSTRGLT 2001
            V ++++ F  K  Y     YPS EYG +  C F+GLDPY+EMVHSIS RE+ VRS+RGL+
Sbjct: 723  VDDVASHFHAKCCYDGDG-YPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLS 781

Query: 2002 EPGTLFKNLMAILRDVVICYDGTVRNVSSTSIVQFEYGFKDGNTFHSEFGAGDPVGVLAA 2181
            EPGTLFKNLMAILRDVVICYDGTVRN+ S SI+QFEYG + G+     F AG+PVGVLAA
Sbjct: 782  EPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAA 841

Query: 2182 TAMSNPAYKAVLDXXXXXXXXWEMMKEILLCSAKFKNDLSDRRVLLYLNDCDCGRDYCQE 2361
            TAMSNPAYKAVLD        WE+MKEILLC   F+N+  DRRV+LYLNDCDCG   C+E
Sbjct: 842  TAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRE 901

Query: 2362 RAACFLKNQLEKVSLKDVAVEFLIEYGEQETMGEISATEKGLVGHIHLNKSQLDNLGISM 2541
             AA  +KNQL KVSLK+ AVEF+IEY +Q T  E S T+ GLVGHI+L++  L+ L ISM
Sbjct: 902  NAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISM 961

Query: 2542 SGVLDKCEDNVDSFRRKKKLGQLFKRISLSFREYCSFGASKTQCPDMHCLSFSFQGVHDE 2721
            + V +KC + + SF RKKK+ Q  K I LSF E CS     +  P   CL+F  +  HD 
Sbjct: 962  ANVFEKCLERLKSFSRKKKVNQYLKNIELSFSESCS-----SSHPAAPCLTFWLKN-HDS 1015

Query: 2722 HLERTCHILADTVCPVLLETIIKGDPRISSASIVWISPETTTWVRSLTEKQKGELVIDVA 2901
             L+    +L++ +CPVL ETIIKGDPRISSASI+W+SP+T TWVR+  +   GEL +D+ 
Sbjct: 1016 DLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIV 1075

Query: 2902 VEKESVKQGGDAWRVVMDCCLPVIDLIDTTRTIPYGIKQIQELLGISCAFEQAVQRLSSS 3081
            +E+E+VKQ GDAWR+V+D CLPV+ LIDT R+IPY IKQIQELLGISC F+QA+QR+++S
Sbjct: 1076 LEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAAS 1135

Query: 3082 VTMVTKGVLKDHLVLLANSMTCSGNMIGFNSGGIKAFSRALNIQAPFKEATLFTPRKCFE 3261
            V MV KGVL++HL+LLA+SMTC GN++GFN+GG KA SR LNIQ PF +ATLFTP+KCFE
Sbjct: 1136 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFE 1195

Query: 3262 KAAENCHKDSLSSIVASCSWGNPVAVGTGTPFDIHWDTREVDLNQPEGVDVYSFLHLLRS 3441
            +AAE CH DSLSSIVASCSWG  VAVGTG+ FDI WD+ E+  N+ EG+DVYSFLH+++S
Sbjct: 1196 RAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKS 1255

Query: 3442 TEDNGQIDSSCLGQDIDEFEMEDQP----SPVRDSDFEKPDFEDRADFEDNTG--NTSSP 3603
              +  +   +CLG+DID+   E+      SP  +S FE       A FE+N    N S+ 
Sbjct: 1256 VTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFE-------AVFEENPEVLNGSTS 1308

Query: 3604 GAWNVEEKKDDHSTS-WSSW--------EKKLEGNDGGQDIPGSTSSPG-AWGVKEKKDD 3753
              W+V   +    T+ WS W         +  + N  G+ +    SS   AW      D 
Sbjct: 1309 NGWDVSSNQTQSKTNEWSGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTADQ 1368

Query: 3754 PSTS------WGKKSNENEGHTDVTK-----SSSPGAWNVKERKDDQXXXXXXXVXXXXX 3900
              T       WG  SN++E     +K     SS   AWN     + Q             
Sbjct: 1369 TKTKSNEWSDWG--SNKSEIPAGGSKAVQEDSSKSNAWNTSTTSN-QTKTKSKEWSAWGS 1425

Query: 3901 XXXXXXXXGGQVVTEKSSSPGAWNVE---DAKGNQSSSWSLCXXXXXXXXXXXXXXXXQV 4071
                    G + V E SS    WN     D    +S+ WS                  + 
Sbjct: 1426 NKSEIPACGSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSA----WGSNKSEIPAGGSKA 1481

Query: 4072 VTGKSSSPGAWNVKETKDDQXXXXXXXGKKNNEEKRLEDNE------GGQVVTGKSSGPG 4233
            V   SS   AWN   T D           K+NE      N+      G + V   SS   
Sbjct: 1482 VQEDSSKSNAWNRSTTADQTKT-------KSNEWSAWGSNKSEIPAGGSKAVQEDSSKSN 1534

Query: 4234 AWNVK------ETKDDQSASWS--------------------SWGTXXXXXXXXXXXXGG 4335
            AWN        +TK ++ ++W                     +W T              
Sbjct: 1535 AWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEW 1594

Query: 4336 QV-VTGKSSSP-----------------------------GAWNVKETKDDQSASWSSWG 4425
               V+ KS  P                             GAW+       +S  WS WG
Sbjct: 1595 SARVSNKSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSNEWSGWG 1654

Query: 4426 KRNNEEKKMEDNVGGQGVTGK---------SSSPGAW--NVKEAKDDQSASWSSWGKKNN 4572
            K+  ++   EDNV     +GK         +S  G W  N  +    +S+ WSSWGK   
Sbjct: 1655 KK--KDVTQEDNVQHSWGSGKRKDKVTQEDNSGSGDWGANRTDLAITKSSEWSSWGKNKT 1712

Query: 4573 E-EAGKTTNEXXXXXXXXXXXXXAGQLQETQATIS------EASSNDW--GKFDTTD--- 4716
            E  AG + N               G+L +TQ   S      E S + W   K +T D   
Sbjct: 1713 EIPAGGSAN-------VQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWVRNKAETIDGGS 1765

Query: 4717 ----EKESSTPNWR------------------------------SNARGWQS-------- 4770
                E   ++ NW+                              S+++GW+S        
Sbjct: 1766 EKPQEDAWNSGNWKAESKVGNTTWGKPKSSESHAWDSHNQSNQNSSSQGWESHIASANSE 1825

Query: 4771 --------------SGXXXXXXXXXXXXSADPSSAVRAFTVTRQRLDAFTAXXXXXXXXX 4908
                                        + D  +  R      QRLD +++         
Sbjct: 1826 NEKGFQWGKGRDSFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSEEQDVLKDI 1885

Query: 4909 XXXMQNIRRIMHQSGYTDCQPLTPEDQSYIIENVLNHHPDKAVKMGVGIDFIMVSKHANF 5088
               MQ+IRRIM Q GY+D  PL  EDQ +++ENV  HHPDK  KMG GID++MV+KH++F
Sbjct: 1886 EPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSF 1945

Query: 5089 QENRCLHVVSTDKSQQDFSYRKCLDNFIKEKYPEKAEEFLAKYFKK 5226
            QE+RC +VV  D   +DFSYRKCL N+I +KYP+ AE FL KYF+K
Sbjct: 1946 QESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRK 1991