BLASTX nr result
ID: Lithospermum22_contig00005342
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00005342
(6162 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2830 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2791 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2791 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2779 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2774 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2830 bits (7337), Expect = 0.0
Identities = 1390/1537 (90%), Positives = 1470/1537 (95%)
Frame = +3
Query: 213 MDTRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 392
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 393 DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLTILRCVCFNCSKILADEDDPK 572
DRK+KCETC ANMAECPGHFGHLELAKPMFHIGFMKTVL+I+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 573 MKQAMRIRNPKNKLKKVYDACKNKTKCEGGDEIDMQSQDTEEPIKKTRGGCGAQQPKISI 752
KQA +IRNPKN+LKK+ DACKNK+KCEGGDEI+ Q+ D++EP+KK+RGGCGAQQPK++I
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 753 DGMKMVAEYKLTKKKNDDQEQLPEPVERKQQLSAERVLSILKRVSDEDCHSLGLNPKYAR 932
+GMKM+AEYK+ +KKNDD EQLPEPVERKQQLSAERVL++LKR+SDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 933 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLKKQERNGAPAHIIS 1112
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1113 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1292
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1293 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1472
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1473 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1652
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1653 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1832
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1833 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPQPAILKPRPLWTGKQVFNLIIPKQIN 2012
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIP PAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2013 LLRNSAWHSDSESGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 2192
LLR SAWHS+SE+GFITPGDTQVRIEKGELL+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2193 RKFLGHTQWLVNYWLLQHGFSIGIGDTIADAATMEKINETISGAKNQVKDLIRQFQEKQL 2372
RKFLGHTQWLVNYWLLQ+GFSIGIGDTIADAATMEKINETIS AKN+VK+LIR QE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2373 EPEPGRTMNDSFENKVNQVLNKARDEAGSSAEKSLAESNNLKAMVTAGSKGSFINISQMT 2552
E EPGRTM +SFEN+VNQVLNKARD+AGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2553 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2732
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2733 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2912
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2913 LESLKLKKDDFERKYKYEIDDQRWRPDYMSSEAVEDLKTIREIRSVFDAEVSKLEADRSQ 3092
L+SLK+KK +F+R +KYEIDD+ W P YM E VEDLKTIRE R+VFDAEV KLEADR Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 3093 LGKEIATTGENSWPLPVNIKRLIWNAQKTFKIDPRRASDMHPMEIVEAVDKLQEKLKVVH 3272
LG EIATTG+NSWP+PVN+KRLIWNAQKTFK+D RR SDMHPMEIVEAVDKLQE+LKVV
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 3273 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAPG 3452
GDD +SMEAQKNATLFFNILLRS ASKRVLKEYRLTREAF+WV+GEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3453 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3632
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 3633 PEVGKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVSSYYEMPDEEI 3812
P+V KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FV SYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 3813 DPNKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3992
P KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3993 NDEAPKGELQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKVQKFDEHEGFKT 4172
NDEAPKGELQDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK+ KV KFDE EGFK
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 4173 ETEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4352
E EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4353 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 4532
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 4533 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEISLPSYMEGGLEFGMTPGRSPISGT 4712
LRGVTENIMLGQLAPIGTGDCALYLN++ML+ AIE+ LPSYME GL+FGMTP RSPI+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGT 1499
Query: 4713 PYHDGMMSPNYLLSPNHLRMSPMSDAQFSPYVGGMAF 4823
PYHDGMMSPNYLLSPN LR+SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPN-LRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2791 bits (7235), Expect = 0.0
Identities = 1379/1537 (89%), Positives = 1456/1537 (94%)
Frame = +3
Query: 213 MDTRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 392
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEHGETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 393 DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLTILRCVCFNCSKILADEDDPK 572
DRK+KCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLTI+R VCFNCSKIL DE+DPK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 573 MKQAMRIRNPKNKLKKVYDACKNKTKCEGGDEIDMQSQDTEEPIKKTRGGCGAQQPKISI 752
KQA+RI+NPKN+L+K+ DACKNKTKCEGGDEID+Q QD+++P+KK+RGGCGAQQPKISI
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 753 DGMKMVAEYKLTKKKNDDQEQLPEPVERKQQLSAERVLSILKRVSDEDCHSLGLNPKYAR 932
+GMKM AEYK +KKNDD EQLPEPVERKQ L+AERVL ILKR++DEDC LGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 933 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLKKQERNGAPAHIIS 1112
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1113 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1292
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1293 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1472
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1473 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1652
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1653 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1832
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1833 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPQPAILKPRPLWTGKQVFNLIIPKQIN 2012
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIP PAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2013 LLRNSAWHSDSESGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 2192
L R SAWHS+SE+G ITPGDT VRIEKGELLSGTLCKKALGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2193 RKFLGHTQWLVNYWLLQHGFSIGIGDTIADAATMEKINETISGAKNQVKDLIRQFQEKQL 2372
RKFLGHTQWLVNYWLLQ+ FSIGIGDTIADAATMEKINETIS AKN+VK+LI++ QE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2373 EPEPGRTMNDSFENKVNQVLNKARDEAGSSAEKSLAESNNLKAMVTAGSKGSFINISQMT 2552
EPEPGRTM DSFENKVNQVLNKARD+AGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2553 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2732
ACVGQQNVEGKRIPFGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2733 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2912
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2913 LESLKLKKDDFERKYKYEIDDQRWRPDYMSSEAVEDLKTIREIRSVFDAEVSKLEADRSQ 3092
L+SLK+KK +FER ++YE +D+ W+P+YM E VEDLKTIRE R+VF+AEV KLEADR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3093 LGKEIATTGENSWPLPVNIKRLIWNAQKTFKIDPRRASDMHPMEIVEAVDKLQEKLKVVH 3272
LG EIATTGENSWP+PVN+KRLI NAQKTFKID RRASDMHPMEIVEA+DKLQE+LKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3273 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAPG 3452
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTREAF+WV+GEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3453 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3632
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3633 PEVGKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVSSYYEMPDEEI 3812
PE KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED++FV SYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3813 DPNKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3992
P KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3993 NDEAPKGELQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKVQKFDEHEGFKT 4172
NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK KV KFDE+EGFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4173 ETEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4352
E EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4353 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 4532
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4533 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEISLPSYMEGGLEFGMTPGRSPISGT 4712
LRGVTENIMLGQLAPIGTG CALYLN+EMLK AIE+ LPSY++ GL+FGMTP RSPISGT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 4713 PYHDGMMSPNYLLSPNHLRMSPMSDAQFSPYVGGMAF 4823
PYH+GMMSPNYLLSPN LR+SP+SDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPN-LRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2791 bits (7235), Expect = 0.0
Identities = 1379/1537 (89%), Positives = 1456/1537 (94%)
Frame = +3
Query: 213 MDTRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 392
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEHGETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 393 DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLTILRCVCFNCSKILADEDDPK 572
DRK+KCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLTI+R VCFNCSKIL DE+DPK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 573 MKQAMRIRNPKNKLKKVYDACKNKTKCEGGDEIDMQSQDTEEPIKKTRGGCGAQQPKISI 752
KQA+RI+NPKN+L+K+ DACKNKTKCEGGDEID+Q QD+++P+KK+RGGCGAQQPKISI
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 753 DGMKMVAEYKLTKKKNDDQEQLPEPVERKQQLSAERVLSILKRVSDEDCHSLGLNPKYAR 932
+GMKM AEYK +KKNDD EQLPEPVERKQ L+AERVL ILKR++DEDC LGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 933 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLKKQERNGAPAHIIS 1112
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1113 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1292
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1293 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1472
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1473 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1652
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1653 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1832
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1833 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPQPAILKPRPLWTGKQVFNLIIPKQIN 2012
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIP PAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2013 LLRNSAWHSDSESGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 2192
L R SAWHS+SE+G ITPGDT VRIEKGELLSGTLCKKALGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2193 RKFLGHTQWLVNYWLLQHGFSIGIGDTIADAATMEKINETISGAKNQVKDLIRQFQEKQL 2372
RKFLGHTQWLVNYWLLQ+ FSIGIGDTIADAATMEKINETIS AKN+VK+LI++ QE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2373 EPEPGRTMNDSFENKVNQVLNKARDEAGSSAEKSLAESNNLKAMVTAGSKGSFINISQMT 2552
EPEPGRTM DSFENKVNQVLNKARD+AGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2553 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2732
ACVGQQNVEGKRIPFGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2733 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2912
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2913 LESLKLKKDDFERKYKYEIDDQRWRPDYMSSEAVEDLKTIREIRSVFDAEVSKLEADRSQ 3092
L+SLK+KK +FER ++YE +D+ W+P+YM E VEDLKTIRE R+VF+AEV KLEADR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3093 LGKEIATTGENSWPLPVNIKRLIWNAQKTFKIDPRRASDMHPMEIVEAVDKLQEKLKVVH 3272
LG EIATTGENSWP+PVN+KRLI NAQKTFKID RRASDMHPMEIVEA+DKLQE+LKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3273 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAPG 3452
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTREAF+WV+GEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3453 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3632
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3633 PEVGKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVSSYYEMPDEEI 3812
PE KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED++FV SYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3813 DPNKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3992
P KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3993 NDEAPKGELQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKVQKFDEHEGFKT 4172
NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK KV KFDE+EGFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4173 ETEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4352
E EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4353 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 4532
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4533 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEISLPSYMEGGLEFGMTPGRSPISGT 4712
LRGVTENIMLGQLAPIGTG CALYLN+EMLK AIE+ LPSY++ GL+FGMTP RSPISGT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 4713 PYHDGMMSPNYLLSPNHLRMSPMSDAQFSPYVGGMAF 4823
PYH+GMMSPNYLLSPN LR+SP+SDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPN-LRLSPISDAQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2779 bits (7203), Expect = 0.0
Identities = 1362/1537 (88%), Positives = 1454/1537 (94%)
Frame = +3
Query: 213 MDTRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 392
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 393 DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLTILRCVCFNCSKILADEDDPK 572
DRK+KCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+I+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 573 MKQAMRIRNPKNKLKKVYDACKNKTKCEGGDEIDMQSQDTEEPIKKTRGGCGAQQPKISI 752
KQA++I+NPKN+LKK+ DACKNKTKCEGGD+ID+ SQDT+EP+KK+RGGCGAQQP+++I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 753 DGMKMVAEYKLTKKKNDDQEQLPEPVERKQQLSAERVLSILKRVSDEDCHSLGLNPKYAR 932
+GMKM+AEYK +KKNDDQEQLPEPVERKQ L+AERVL +LKR+SD+DC LG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 933 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLKKQERNGAPAHIIS 1112
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLKKQE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 1113 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1292
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1293 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1472
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1473 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1652
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1653 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1832
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1833 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPQPAILKPRPLWTGKQVFNLIIPKQIN 2012
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P PAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2013 LLRNSAWHSDSESGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 2192
L+R +AWHSDSE G ITPGDT VRIEKGELLSGT+CKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2193 RKFLGHTQWLVNYWLLQHGFSIGIGDTIADAATMEKINETISGAKNQVKDLIRQFQEKQL 2372
RKFLGHTQWLVNYWLLQ+GFSIGIGDTIADAATMEKINETIS AKN VK+LIR+ Q K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2373 EPEPGRTMNDSFENKVNQVLNKARDEAGSSAEKSLAESNNLKAMVTAGSKGSFINISQMT 2552
EP+PGRTM +SFEN+VNQVLN+ARD+AGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2553 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2732
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2733 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2912
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2913 LESLKLKKDDFERKYKYEIDDQRWRPDYMSSEAVEDLKTIREIRSVFDAEVSKLEADRSQ 3092
L+SLK+KK +F+R +KYE+DD+ W P YM + ++DLK IRE+R VFDAEV KLEADR Q
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 3093 LGKEIATTGENSWPLPVNIKRLIWNAQKTFKIDPRRASDMHPMEIVEAVDKLQEKLKVVH 3272
LG EIATTG++SWPLPVN++RLIWNAQKTFK+D RR SD+HPME VEAVDKLQE+LKVV
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 3273 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAPG 3452
GDD LS+EAQKNATLFF ILLRS LASKRVL++YRLTREAFDWV+GEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 3453 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3632
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 3633 PEVGKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVSSYYEMPDEEI 3812
PE KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FV SYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 3813 DPNKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3992
P KISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3993 NDEAPKGELQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKVQKFDEHEGFKT 4172
NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK SKV KFDE+EGFKT
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 4173 ETEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4352
EWMLDTEGVNLLAVMC+E+VDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4353 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 4532
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 4533 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEISLPSYMEGGLEFGMTPGRSPISGT 4712
LRGVTENIMLGQLAPIGTGDCALYLN++MLK AIE+ LPSYM+ GL+FGMTP RSP+S T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMD-GLDFGMTPARSPVSVT 1499
Query: 4713 PYHDGMMSPNYLLSPNHLRMSPMSDAQFSPYVGGMAF 4823
PYHDGMMSP+YLLSP+ LR+SP +DAQFSPYV GM F
Sbjct: 1500 PYHDGMMSPSYLLSPS-LRLSPTTDAQFSPYVSGMPF 1535
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2774 bits (7190), Expect = 0.0
Identities = 1366/1537 (88%), Positives = 1451/1537 (94%)
Frame = +3
Query: 213 MDTRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 392
MD RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEHGETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 393 DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLTILRCVCFNCSKILADEDDPK 572
DRKLKCETC A+MAECPGHFGHLELAKPMFHIGF+KTVLTI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 573 MKQAMRIRNPKNKLKKVYDACKNKTKCEGGDEIDMQSQDTEEPIKKTRGGCGAQQPKISI 752
KQA+RIRNPKN+LKK+ DACKNK+KCEGGDEID+ QDT+EP+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 753 DGMKMVAEYKLTKKKNDDQEQLPEPVERKQQLSAERVLSILKRVSDEDCHSLGLNPKYAR 932
+GMKM+AEYK +KK+DDQEQLPEPVERKQ LSAERVL +LKR+SDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 933 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLKKQERNGAPAHIIS 1112
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLK+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1113 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1292
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1293 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1472
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1473 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1652
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1653 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1832
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1833 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPQPAILKPRPLWTGKQVFNLIIPKQIN 2012
LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+P PAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 2013 LLRNSAWHSDSESGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 2192
L+R S+WHS+SE G ITPGDT VRIEKGELL+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2193 RKFLGHTQWLVNYWLLQHGFSIGIGDTIADAATMEKINETISGAKNQVKDLIRQFQEKQL 2372
RKFLGHTQWLVNYWLLQ+ FSIGIGDTIADA+TME IN+TIS AK +VK LIR+ QEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2373 EPEPGRTMNDSFENKVNQVLNKARDEAGSSAEKSLAESNNLKAMVTAGSKGSFINISQMT 2552
E EPGRTM DSFEN+VNQ LN+ARD+AG+SA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2553 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2732
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2733 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2912
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2913 LESLKLKKDDFERKYKYEIDDQRWRPDYMSSEAVEDLKTIREIRSVFDAEVSKLEADRSQ 3092
L+SLK+KK +F+R ++YE DD+ W+P YM E VEDLKTIRE R+VF+AEV KLEADR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3093 LGKEIATTGENSWPLPVNIKRLIWNAQKTFKIDPRRASDMHPMEIVEAVDKLQEKLKVVH 3272
L EIATTG++S PLPVN+KRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQE+LKVV
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3273 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAPG 3452
G+D LS EAQKNATL FNILLRS ASKRVL+EYRL+REAF+WVVGEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 3453 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3632
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 3633 PEVGKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVSSYYEMPDEEI 3812
+VGKTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMST+IEED +FV SYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 3813 DPNKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 3992
KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3993 NDEAPKGELQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKVQKFDEHEGFKT 4172
NDEAPKGE+QDESAEDDVFLKKIE NMLTEM LRGIPDINKVFIKN+KVQKFDE++GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 4173 ETEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4352
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4353 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 4532
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 4533 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEISLPSYMEGGLEFGMTPGRSPISGT 4712
LRGVTENIMLGQLAPIGTG+CALYLN+EMLK AIE+ LPSYM+ GL+FGMTP RSPISGT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 4713 PYHDGMMSPNYLLSPNHLRMSPMSDAQFSPYVGGMAF 4823
PYH+G+MSP+YLLSPN LR+SP SDAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPN-LRLSPTSDAQFSPYVGGMAF 1535