BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00004809
         (1406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   558   e-157
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   550   e-154
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   546   e-153
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   542   e-152
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   538   e-150

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  558 bits (1439), Expect = e-157
 Identities = 279/393 (70%), Positives = 328/393 (83%), Gaps = 2/393 (0%)
 Frame = -3

Query: 1191 SHFPTFDDIKGITIRRSKLSKWFMEPFFDDLIVGCFVRVGIGRSRSAPIYRLCIVRNVDA 1012
            S  PTFDDI+ ITIRRSKL+KWFMEP+F++LIVGCFVRVGIGRS+S PIYRLC+VRNVDA
Sbjct: 268  SQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKSGPIYRLCLVRNVDA 327

Query: 1011 SDPDKFYKLDNKTTYKYLNVVWGNETSAARWQMAMISDSSPRKEEYDQWIKEVDHTAGRL 832
            +DPD+ YKL+NKTTYKYLNV+WGNE+SAARWQMAMISDS+P ++EY QW++EV+ + GR+
Sbjct: 328  ADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQWVREVERSGGRM 387

Query: 831  PTKQDVLEKKEAIQKTNNYVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEVANMK 652
            PTKQD+LEKKEAI+K+N +VYSA TVKQMLQEKKSA+ RPLNVAAEKDRLRRE+EVA  K
Sbjct: 388  PTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSK 447

Query: 651  HDVAEVERIQARIQQLEAGRHTHQKDSKAVRLAEMNKRNRVENFKNASELKQHTMGLKAG 472
             D AEVERI+ARIQ+LEA R T  KD+KA+RLAEMN++NR ENF+NASELK     LKAG
Sbjct: 448  QDDAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAG 507

Query: 471  EAGYDPFSRRWTRSRNYYVGKGSGGEVAEGENADANALSIGA--TNQASGVTGEAGLVVT 298
            EAGYDPFSRRWTRSRNYYV K +GG+ A   N +A+     A  T  A+GV+ EAG+  T
Sbjct: 508  EAGYDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAAT 567

Query: 297  ASALDAAAEAGKLVDTSAPVDQGTETYTLHNFELPISLSVLQKXXXXXXXXXXXXARKQM 118
            A+AL+AAA+AGKLVDT+APVDQGTE+ TLHNFELPISL+ LQK            ARKQ 
Sbjct: 568  AAALEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQR 627

Query: 117  IEATVGVQVPENDGRRHALTLTVGDYKRRRGLL 19
            IEAT+G +V END +RH LTLTV DYKRRRGLL
Sbjct: 628  IEATIGCRVSENDEKRHVLTLTVSDYKRRRGLL 660


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  550 bits (1418), Expect = e-154
 Identities = 278/392 (70%), Positives = 324/392 (82%), Gaps = 1/392 (0%)
 Frame = -3

Query: 1191 SHFPTFDDIKGITIRRSKLSKWFMEPFFDDLIVGCFVRVGIGRSRSAPIYRLCIVRNVDA 1012
            S  P+F DIK ITIRRSKL+KWFMEPFF++LIVGCFVRVGIGRS++ PIYRLC+V+NVDA
Sbjct: 266  SEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDA 325

Query: 1011 SDPDKFYKLDNKTTYKYLNVVWGNETSAARWQMAMISDSSPRKEEYDQWIKEVDHTAGRL 832
            S+PD+ YKL+NKTTYKYLNVVWGNE+SAARWQMAM+SDS+P +EE+ QW+KEVD + GR+
Sbjct: 326  SEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRM 385

Query: 831  PTKQDVLEKKEAIQKTNNYVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEVANMK 652
            P+KQDVLEKK+AIQK   +VYSA TVKQMLQEKKSA+ RPLNVAAEKDRLRRE+E+A  K
Sbjct: 386  PSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSK 445

Query: 651  HDVAEVERIQARIQQLEAGRHTHQKDSKAVRLAEMNKRNRVENFKNASELKQHTMGLKAG 472
            HD AEVERI+ R+Q+LEA R   QKD+KA++LAEMN++NR ENFKNASELK   +GLKAG
Sbjct: 446  HDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELKPVNIGLKAG 505

Query: 471  EAGYDPFSRRWTRSRNYYVGKGSGGEVAEGEN-ADANALSIGATNQASGVTGEAGLVVTA 295
            EAGYDPFSRRWTRSRNYY  K  G + A G N  + N    G+    + VT EAG+V TA
Sbjct: 506  EAGYDPFSRRWTRSRNYYAAK-PGEKAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATA 564

Query: 294  SALDAAAEAGKLVDTSAPVDQGTETYTLHNFELPISLSVLQKXXXXXXXXXXXXARKQMI 115
            +AL+AAA AGKLVDTSAPVDQGTE+  LHNFELPISL++LQK            ARKQ I
Sbjct: 565  AALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRI 624

Query: 114  EATVGVQVPENDGRRHALTLTVGDYKRRRGLL 19
            E+TVG +V ENDGRRHALTLTV DYKRRRGLL
Sbjct: 625  ESTVGFRVSENDGRRHALTLTVSDYKRRRGLL 656


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  546 bits (1408), Expect = e-153
 Identities = 272/391 (69%), Positives = 319/391 (81%)
 Frame = -3

Query: 1191 SHFPTFDDIKGITIRRSKLSKWFMEPFFDDLIVGCFVRVGIGRSRSAPIYRLCIVRNVDA 1012
            S  P+F D+K ITIRRSKL+KWFMEPFF++LIVGCFVRVGIGRS++ PIYRLC+V+NVDA
Sbjct: 266  SEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDA 325

Query: 1011 SDPDKFYKLDNKTTYKYLNVVWGNETSAARWQMAMISDSSPRKEEYDQWIKEVDHTAGRL 832
            S+PD+ YKL+NKTTYKYLNVVWGNE+SAARWQMAM+SDS+P +EE+ QW+KEVD + GR+
Sbjct: 326  SEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRM 385

Query: 831  PTKQDVLEKKEAIQKTNNYVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEVANMK 652
            P+KQDVLEKK+AIQK   +VYSA TVKQMLQEKKSA+ RPLNVAAEKDRLRRE+E+A  K
Sbjct: 386  PSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSK 445

Query: 651  HDVAEVERIQARIQQLEAGRHTHQKDSKAVRLAEMNKRNRVENFKNASELKQHTMGLKAG 472
            +D AEVERI+ R+ +LEA R   QKD+KA++LAEMN++NR ENFKNASE+K    GLKAG
Sbjct: 446  YDEAEVERIKTRLLELEASRQAKQKDAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAG 505

Query: 471  EAGYDPFSRRWTRSRNYYVGKGSGGEVAEGENADANALSIGATNQASGVTGEAGLVVTAS 292
            EAGYDPFSRRWTRSRNYY  K      A   + + N    G+    + VT EAG+V TA+
Sbjct: 506  EAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAA 565

Query: 291  ALDAAAEAGKLVDTSAPVDQGTETYTLHNFELPISLSVLQKXXXXXXXXXXXXARKQMIE 112
            AL+AAA AGKLVDTSAPVDQGTE+  LHNFELPISL++LQK            ARKQ IE
Sbjct: 566  ALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIE 625

Query: 111  ATVGVQVPENDGRRHALTLTVGDYKRRRGLL 19
            ATVG +V ENDGRRHALTLTV DYKRRRGLL
Sbjct: 626  ATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  542 bits (1397), Expect = e-152
 Identities = 271/391 (69%), Positives = 325/391 (83%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1182 PTFDDIKGITIRRSKLSKWFMEPFFDDLIVGCFVRVGIGRSRSAPIYRLCIVRNVDASDP 1003
            PT++DIK ITIRR+KL+KWFMEP+F++LI+GCFVRVGIGRS+S P+YRLC+VRNVDA++P
Sbjct: 272  PTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEP 331

Query: 1002 DKFYKLDNKTTYKYLNVVWGNETSAARWQMAMISDSSPRKEEYDQWIKEVDHTAGRLPTK 823
            DK YKL+NK+TYKYLNV WG +TSAARWQMAM+SDS P +EEY QW++EV+   GRLP+K
Sbjct: 332  DKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSK 391

Query: 822  QDVLEKKEAIQKTNNYVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEVANMKHDV 643
            QD+LEKKEAI+K+N +VYSA TVKQMLQEKKSA+ RPLNVAAEKDRLRRE+E+A  KHD 
Sbjct: 392  QDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDE 451

Query: 642  AEVERIQARIQQLEAGRHTHQKDSKAVRLAEMNKRNRVENFKNASELKQHTMGLKAGEAG 463
            AEVERI ARI++LEA RH   KD+KA+RLAEMN++NRVENF+NASE+K    GLKAGEAG
Sbjct: 452  AEVERINARIEELEASRHAKVKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAG 511

Query: 462  YDPFSRRWTRSRNYYVGKGSGGE--VAEGENADANALSIGATNQ-ASGVTGEAGLVVTAS 292
            YDPFSRRWTRSRNYYV K +  +  VA   +     +++ A+NQ  +GV  EAG+  T +
Sbjct: 512  YDPFSRRWTRSRNYYVSKPAEADDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEA 571

Query: 291  ALDAAAEAGKLVDTSAPVDQGTETYTLHNFELPISLSVLQKXXXXXXXXXXXXARKQMIE 112
            AL+AAA+AGKLVDTSAPVDQGTE+ T+H+FEL ISL  LQ+            ARKQ IE
Sbjct: 572  ALEAAADAGKLVDTSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIE 631

Query: 111  ATVGVQVPENDGRRHALTLTVGDYKRRRGLL 19
            ATVG +VPENDGRRHALTLTVGDYKRRRGLL
Sbjct: 632  ATVGCRVPENDGRRHALTLTVGDYKRRRGLL 662


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  538 bits (1387), Expect = e-150
 Identities = 274/391 (70%), Positives = 323/391 (82%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1182 PTFDDIKGITIRRSKLSKWFMEPFFDDLIVGCFVRVGIGRSRSAPIYRLCIVRNVDASDP 1003
            PTF+DIK +TIRRSKL+KW MEPFF++LIVGCFVRVGIGRSRS PIYRLC+VRNVDA++P
Sbjct: 272  PTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEP 331

Query: 1002 DKFYKLDNKTTYKYLNVVWGNETSAARWQMAMISDSSPRKEEYDQWIKEVDHTAGRLPTK 823
            D+ YKL+NK T+KYLNV+WGNE SAARWQMAM+SDS+P ++EY QW+KEV+ T GR+ +K
Sbjct: 332  DRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSK 391

Query: 822  QDVLEKKEAIQKTNNYVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRREMEVANMKHDV 643
            QD+LEKKEAIQK NN+VYSA TVKQMLQ+KKSA+ RPLN+AAEKDRLRREM+VA  K+D 
Sbjct: 392  QDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDE 451

Query: 642  AEVERIQARIQQLEAGRHTHQKDSKAVRLAEMNKRNRVENFKNASELKQHTMGLKAGEAG 463
            AEVERI+ R+QQLEA R    KD+KA+RLAEMN++NRVENFKNASEL+     LKAGEAG
Sbjct: 452  AEVERIKTRLQQLEASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRP-LKDLKAGEAG 510

Query: 462  YDPFSRRWTRSRNYYV---GKGSGGEVAEGENADANALSIGATNQASGVTGEAGLVVTAS 292
            YDPFSRRWTRSRNYYV   G+ +G   A G N+D    ++  T   +G T +AG+  TA+
Sbjct: 511  YDPFSRRWTRSRNYYVSNAGEANGAAEAAG-NSDNVTPALENTRTEAGGTSDAGMAATAA 569

Query: 291  ALDAAAEAGKLVDTSAPVDQGTETYTLHNFELPISLSVLQKXXXXXXXXXXXXARKQMIE 112
            AL+AAA AGKLVDT+APVD GTE+ +LHNFELPISL++LQK            ARKQ IE
Sbjct: 570  ALEAAAGAGKLVDTNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIE 629

Query: 111  ATVGVQVPENDGRRHALTLTVGDYKRRRGLL 19
            ATVG QVPENDGRRHALTLTV DYKRRRGLL
Sbjct: 630  ATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660