BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00004669
         (1998 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis t...   131   4e-51
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop...   110   7e-45
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   122   3e-44
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...   120   3e-43
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...   111   7e-41

>dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 370

 Score =  131 bits (329), Expect(2) = 4e-51
 Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
 Frame = -3

Query: 862 LRDRYSLRNGPRIHELKQKIIECKQVGRTVDVYYGELCRLWDELGSAMKLPTCT-CSAVT 686
           LR R+S+ N  R+H++K ++  C+Q G+TV  YYG LC LWDEL +      C   S +T
Sbjct: 125 LRQRFSVTNNVRVHQIKAQLASCRQEGQTVIDYYGRLCNLWDELKNYQASAVCPHGSVLT 184

Query: 685 EYQTLLDTKKLHQFLIGLDSKKYKTVVDGLLMMDPLPSVTYAHGKVLSSERHHNVSHCTE 506
                 D +KLHQF++GLDS ++  +   L+ MDPLPS+  A+ +V+  E+  + S   E
Sbjct: 185 AIVKERDDEKLHQFVLGLDSARFSGLCTNLINMDPLPSLGVAYSQVIREEQRIHASRTQE 244

Query: 505 THSDVVGF------STNAIAHGRVVGKDFVGGSEIPICTHCGIKGHKKEGCFELIGWPDW 344
              +VVGF      S+   +  +   +  +  S   +C+HCG  GH+K+ C+ ++G+PDW
Sbjct: 245 QRQEVVGFVARHEQSSAMSSPAQSSIESSIVKSRPVLCSHCGRTGHEKKDCWSIVGFPDW 304



 Score = 99.0 bits (245), Expect(2) = 4e-51
 Identities = 52/113 (46%), Positives = 68/113 (60%)
 Frame = -1

Query: 1200 QPPSSSSVGSGRYQPFTPYYLHPSEGTGTVISPILLKRDNYNEWVCSLRNNLHAKNKLGF 1021
            QPPS+SSV        +PY L  S+  GT+I+ ++L  DNYNEW   + N L AK K GF
Sbjct: 18   QPPSASSVVQ------SPYTLSNSDNPGTLITSVVLNGDNYNEWSEEMLNALQAKRKTGF 71

Query: 1020 IDGTITAPDATSSDFEQ*GIVNSMLVSWIYNTLNESIRSTVPFPDHVKVLWDD 862
            IDGTI  P + S DFE    VNSM+V WI  ++   ++STV F     +LWD+
Sbjct: 72   IDGTIQKPASDSPDFENWKTVNSMIVGWIRVSIEPKVKSTVTFISDAHLLWDE 124


>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
          Length = 1152

 Score =  110 bits (275), Expect(2) = 7e-45
 Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
 Frame = -3

Query: 862 LRDRYSLRNGPRIHELKQKIIECKQVGRTVDVYYGELCRLWDELGSAMKLPTCTCSAVT- 686
           LR RYS+ N  R+H+LK  I+ C+Q G+T   Y+G+L  +WD+L     L TC C+  + 
Sbjct: 120 LRTRYSVGNASRVHQLKYDIVACRQDGQTAANYFGKLKVMWDDLDDYEPLLTCCCNRPSC 179

Query: 685 ----EYQTLLDTKKLHQFLIGLDSKKY---KTVVDGLLMMDPLPSVTYAHGKVLSSERHH 527
                     D +++HQFL+GLD+ K+   +T + G L  D   S+   + ++++ ERH 
Sbjct: 180 THRVRQSQRRDHERIHQFLMGLDAAKFGTSRTNILGRLSRDDNISLDSIYSEIIAEERHL 239

Query: 526 NVSHCTETHSDVVGFS----TNAIAHGRVVGKDFVGGSEIPICTHCGIKGHKKEGCFELI 359
            ++   E   D VGF+     NAIA    V       + +  CTHCG   H  + CF+L 
Sbjct: 240 TITRSKEERVDAVGFAVQTGVNAIASVTRV-------NNMGPCTHCGRSNHSADTCFKLH 292

Query: 358 GWPDW 344
           G P+W
Sbjct: 293 GVPEW 297



 Score = 99.0 bits (245), Expect(2) = 7e-45
 Identities = 43/96 (44%), Positives = 64/96 (66%)
 Frame = -1

Query: 1152 TPYYLHPSEGTGTVISPILLKRDNYNEWVCSLRNNLHAKNKLGFIDGTITAPDATSSDFE 973
            +PYYLHPS+    V++P+LL  +NY  W    RNNL AK KLGFIDGT+T P + S D+ 
Sbjct: 23   SPYYLHPSDHPHHVLTPMLLNGENYERWAKLTRNNLQAKQKLGFIDGTLTKPSSDSPDYP 82

Query: 972  Q*GIVNSMLVSWIYNTLNESIRSTVPFPDHVKVLWD 865
            +    NSMLV W+Y +L+  ++ ++   D+ +V+W+
Sbjct: 83   RWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWE 118



 Score = 99.0 bits (245), Expect = 4e-18
 Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = -3

Query: 271 KDLFDVIHCHIWGPYHTSSSIGAHYFLTIVDDCSRAV*VYLMVGKYEVVPLIQIFCAMIH 92
           ++ F  IH  +WGPY  +SS GAHYFLTIVDD SRAV ++LM+ K EV  L+Q F AM  
Sbjct: 568 EECFSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMAS 627

Query: 91  TQFKKKVKILRSDNGKEFM-LKSFYAK 14
            QF K+VK +RS+NG EFM LKS++A+
Sbjct: 628 RQFNKQVKTVRSNNGTEFMSLKSYFAE 654


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  122 bits (306), Expect(2) = 3e-44
 Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
 Frame = -3

Query: 862 LRDRYSLRNGPRIHELKQKIIECKQVGRTVDVYYGELCRLWDELG-----SAMKLPTCTC 698
           L+ R+S+ N  R+H++K ++  C+Q G+ V  YYG LC+LW+E       +  K   CTC
Sbjct: 122 LKQRFSVGNKVRVHQIKAQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTC 181

Query: 697 SAVTEYQTLLDTKKLHQFLIGLDSKKYKTVVDGLLMMDPLPSVTYAHGKVLSSERHHNVS 518
            A  E     + +K+HQF++GLD  ++  +   L+ MDP PS+   + +V+  E+     
Sbjct: 182 GATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASV 241

Query: 517 HCTETHSDVVGFST---NAIAHGRVVGKDFVGGSEIPICTHCGIKGHKKEGCFELIGWPD 347
              E     +GF T      A GR             +C+HCG  GH+K+ C++++G+PD
Sbjct: 242 QIREQQQSAIGFLTRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPD 301

Query: 346 W 344
           W
Sbjct: 302 W 302



 Score = 84.7 bits (208), Expect(2) = 3e-44
 Identities = 40/97 (41%), Positives = 57/97 (58%)
 Frame = -1

Query: 1152 TPYYLHPSEGTGTVISPILLKRDNYNEWVCSLRNNLHAKNKLGFIDGTITAPDATSSDFE 973
            +PY L  S+  G +IS ++L  DNYNEW   + N L AK K GFI+G+I+ P   + D+E
Sbjct: 25   SPYTLASSDNPGAMISSVMLTGDNYNEWSTEMLNALQAKRKTGFINGSISKPPLDNPDYE 84

Query: 972  Q*GIVNSMLVSWIYNTLNESIRSTVPFPDHVKVLWDD 862
                VNSM+V WI  ++   ++STV F      LW +
Sbjct: 85   NWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSE 121



 Score = 96.7 bits (239), Expect = 2e-17
 Identities = 48/87 (55%), Positives = 58/87 (66%)
 Frame = -3

Query: 268 DLFDVIHCHIWGPYHTSSSIGAHYFLTIVDDCSRAV*VYLMVGKYEVVPLIQIFCAMIHT 89
           D F +IHC +WGPY   SS GA YFLTIVDD SR+V  YL++ K EV  ++  F A    
Sbjct: 565 DCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEK 624

Query: 88  QFKKKVKILRSDNGKEFMLKSFYAKDR 8
           QF K VKI+RSDNG EFM  S Y K++
Sbjct: 625 QFGKSVKIIRSDNGTEFMCLSSYFKEQ 651


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  120 bits (301), Expect(2) = 3e-43
 Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 8/181 (4%)
 Frame = -3

Query: 862 LRDRYSLRNGPRIHELKQKIIECKQVGRTVDVYYGELCRLWDELG-----SAMKLPTCTC 698
           L+ R+S+ N   +H++K ++  C+Q G+ V  YYG LC+LW+E       +  K   CTC
Sbjct: 122 LKQRFSVGNKVHVHQIKTQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTC 181

Query: 697 SAVTEYQTLLDTKKLHQFLIGLDSKKYKTVVDGLLMMDPLPSVTYAHGKVLSSERHHNVS 518
            A  E     + +K+HQF++GLD  ++  +   L+ MDP PS+   + +V+  E+     
Sbjct: 182 GATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASV 241

Query: 517 HCTETHSDVVGFST---NAIAHGRVVGKDFVGGSEIPICTHCGIKGHKKEGCFELIGWPD 347
              E     +GF T      A GR             +C+HCG  GH+K+ C++++G+PD
Sbjct: 242 QIREQQQSAIGFLTRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPD 301

Query: 346 W 344
           W
Sbjct: 302 W 302



 Score = 83.6 bits (205), Expect(2) = 3e-43
 Identities = 40/97 (41%), Positives = 57/97 (58%)
 Frame = -1

Query: 1152 TPYYLHPSEGTGTVISPILLKRDNYNEWVCSLRNNLHAKNKLGFIDGTITAPDATSSDFE 973
            +PY L  S+  G +IS ++L  DNYNEW   + N L AK K GFI+G+I+ P   + D+E
Sbjct: 25   SPYTLASSDNPGAMISSVMLTGDNYNEWSTKMLNALQAKRKTGFINGSISKPPLDNPDYE 84

Query: 972  Q*GIVNSMLVSWIYNTLNESIRSTVPFPDHVKVLWDD 862
                VNSM+V WI  ++   ++STV F      LW +
Sbjct: 85   NWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQLWSE 121



 Score = 96.7 bits (239), Expect = 2e-17
 Identities = 48/87 (55%), Positives = 58/87 (66%)
 Frame = -3

Query: 268 DLFDVIHCHIWGPYHTSSSIGAHYFLTIVDDCSRAV*VYLMVGKYEVVPLIQIFCAMIHT 89
           D F +IHC +WGPY   SS GA YFLTIVDD SR+V  YL++ K EV  ++  F A    
Sbjct: 565 DCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEK 624

Query: 88  QFKKKVKILRSDNGKEFMLKSFYAKDR 8
           QF K VKI+RSDNG EFM  S Y K++
Sbjct: 625 QFGKSVKIIRSDNGTEFMCLSSYFKEQ 651


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score =  111 bits (277), Expect(2) = 7e-41
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 19/192 (9%)
 Frame = -3

Query: 862 LRDRYSLRNGPRIHELKQKIIECKQVGRTVDVYYGELCRLWDELGSAMKLPTCTCS---- 695
           L+ R+S+ N  RIH+++ ++  C+Q G+ V  YYG L  LW+E      +  CTC     
Sbjct: 127 LKQRFSVGNKVRIHQIRAQLSSCRQDGQAVIEYYGRLSNLWEEYNIYKPVTVCTCGLCRC 186

Query: 694 -AVTEYQTLLDTKKLHQFLIGLDSKKYKTVVDGLLMMDPLPSVTYAHGKVLSSERHHNVS 518
            A +E     + +K+HQF++GLD  ++  +   L+ MDPLPS+   + +V+  E+     
Sbjct: 187 GATSEPTKEREEEKIHQFVLGLDESRFGGLCATLINMDPLPSLGEIYSRVIREEQRLASV 246

Query: 517 HCTETHSDVVGFSTNAIA---HGRVVG----KDFVGGSEI-------PICTHCGIKGHKK 380
           H  E   + VGF         H RV       +  GGS           C++CG  GH+K
Sbjct: 247 HVREQKEEAVGFLARREQLDHHSRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEK 306

Query: 379 EGCFELIGWPDW 344
           + C++++G+PDW
Sbjct: 307 KECWQIVGFPDW 318



 Score = 84.7 bits (208), Expect(2) = 7e-41
 Identities = 40/97 (41%), Positives = 55/97 (56%)
 Frame = -1

Query: 1152 TPYYLHPSEGTGTVISPILLKRDNYNEWVCSLRNNLHAKNKLGFIDGTITAPDATSSDFE 973
            +PY L  S+  G VIS + L  DNYN+W   + N L AK K GFI+GTI  P     ++E
Sbjct: 30   SPYTLASSDNPGAVISSVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYE 89

Query: 972  Q*GIVNSMLVSWIYNTLNESIRSTVPFPDHVKVLWDD 862
                VNSM+V WI  ++   +++TV F     +LW D
Sbjct: 90   NWTAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKD 126



 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 44/87 (50%), Positives = 57/87 (65%)
 Frame = -3

Query: 271 KDLFDVIHCHIWGPYHTSSSIGAHYFLTIVDDCSRAV*VYLMVGKYEVVPLIQIFCAMIH 92
           ++ F +IHC +WGPY   +S GA YFLTIVDD SRAV  YL++ K EV  ++  F     
Sbjct: 581 EECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAE 640

Query: 91  TQFKKKVKILRSDNGKEFMLKSFYAKD 11
            QF K VK++RSDNG EFM  S Y ++
Sbjct: 641 KQFGKTVKMVRSDNGTEFMCLSSYFRE 667