BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00004653
         (1446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              629   e-178
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   629   e-178
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   613   e-173
ref|NP_683275.2| transcription initiation factor TFIIH subunit H...   610   e-172
ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. l...   608   e-171

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  629 bits (1621), Expect = e-178
 Identities = 299/396 (75%), Positives = 338/396 (85%), Gaps = 5/396 (1%)
 Frame = +2

Query: 119  AWERTYTDERSWEALQEDESGLLRPIDNKALHHAQYRRRLRT----ASAVRIQKGLIRYL 286
            AWER Y DERSWE+LQEDESGLLRPIDNK ++HAQYRRR+R+     +  RIQKGLIRYL
Sbjct: 99   AWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYL 158

Query: 287  YVILDFSRAATEMDYKPSRMAVMAKQVEAFIREFFDQNPLSQIGLVILKDGVAHCLTDLA 466
            Y+++D SRAA+EMD+KPSRMAV+AK +EAFIREFFDQNPLSQIGLV +KDG+A CLTDL 
Sbjct: 159  YIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLG 218

Query: 467  GSPEAHIRALMGKLECSGDASLQNGLDLVNELLNQIPSYGHREVLILYSALCTCDPGDIM 646
            GSP++H++ALMGKLECSGD+SLQN LDLV+  LNQIPSYGHREVLILYSAL TCDPGDIM
Sbjct: 219  GSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIM 278

Query: 647  ETIQKCKKSKIRCSVIGISAELYICKYLCQETGGLYYVALDELHLKELVLEHXXXXXXXX 826
            ETIQ+CKKSKIRCSVIG+SAE++IC++LCQETGG Y VALDE H KEL+LEH        
Sbjct: 279  ETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 338

Query: 827  XXXXSNLIKMGFPQRAAEGVVSICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 1006
                +NLIKMGFPQRAAEGV+SICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV
Sbjct: 339  EFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 398

Query: 1007 SSPHLARSYHHLFPITPFNDLSPSVLRY-SQNSAKNCFGCQQSLQNPGNQRVSCVTCPNC 1183
            SSPHLARSYHHLFPI PF+++S S+L    Q S++ CFGCQ+SL  PGN+   CV CP C
Sbjct: 399  SSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKC 458

Query: 1184 KHIFCLDCDIYIHESLHNCPGCESFKHSTNAVPMEE 1291
            K  FCLDCDIYIHESLHNCPGCESF+HS      EE
Sbjct: 459  KQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTEE 494


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
            vinifera]
          Length = 433

 Score =  629 bits (1621), Expect = e-178
 Identities = 299/396 (75%), Positives = 338/396 (85%), Gaps = 5/396 (1%)
 Frame = +2

Query: 119  AWERTYTDERSWEALQEDESGLLRPIDNKALHHAQYRRRLRT----ASAVRIQKGLIRYL 286
            AWER Y DERSWE+LQEDESGLLRPIDNK ++HAQYRRR+R+     +  RIQKGLIRYL
Sbjct: 38   AWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYL 97

Query: 287  YVILDFSRAATEMDYKPSRMAVMAKQVEAFIREFFDQNPLSQIGLVILKDGVAHCLTDLA 466
            Y+++D SRAA+EMD+KPSRMAV+AK +EAFIREFFDQNPLSQIGLV +KDG+A CLTDL 
Sbjct: 98   YIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLG 157

Query: 467  GSPEAHIRALMGKLECSGDASLQNGLDLVNELLNQIPSYGHREVLILYSALCTCDPGDIM 646
            GSP++H++ALMGKLECSGD+SLQN LDLV+  LNQIPSYGHREVLILYSAL TCDPGDIM
Sbjct: 158  GSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIM 217

Query: 647  ETIQKCKKSKIRCSVIGISAELYICKYLCQETGGLYYVALDELHLKELVLEHXXXXXXXX 826
            ETIQ+CKKSKIRCSVIG+SAE++IC++LCQETGG Y VALDE H KEL+LEH        
Sbjct: 218  ETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 277

Query: 827  XXXXSNLIKMGFPQRAAEGVVSICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 1006
                +NLIKMGFPQRAAEGV+SICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV
Sbjct: 278  EFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 337

Query: 1007 SSPHLARSYHHLFPITPFNDLSPSVLRY-SQNSAKNCFGCQQSLQNPGNQRVSCVTCPNC 1183
            SSPHLARSYHHLFPI PF+++S S+L    Q S++ CFGCQ+SL  PGN+   CV CP C
Sbjct: 338  SSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKC 397

Query: 1184 KHIFCLDCDIYIHESLHNCPGCESFKHSTNAVPMEE 1291
            K  FCLDCDIYIHESLHNCPGCESF+HS      EE
Sbjct: 398  KQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTEE 433


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
            sativus]
          Length = 423

 Score =  613 bits (1580), Expect = e-173
 Identities = 291/388 (75%), Positives = 333/388 (85%), Gaps = 7/388 (1%)
 Frame = +2

Query: 119  AWERTYTDERSWEALQEDESGLLRPIDNKALHHAQYRRRLRTASAV----RIQKGLIRYL 286
            AWERTY D+RSWEALQEDESGLLRPIDNKA++HAQYRRRLRT S++    RIQKGLIRYL
Sbjct: 27   AWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYL 86

Query: 287  YVILDFSRAATEMDYKPSRMAVMAKQVEAFIREFFDQNPLSQIGLVILKDGVAHCLTDLA 466
            Y+++DFS+AATEMD++PSRMAV+AK V+AF+REFFDQNPLSQIGLV +KDG A+CLTDL 
Sbjct: 87   YIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLG 146

Query: 467  GSPEAHIRALMGKLECSGDASLQNGLDLVNELLNQIPSYGHREVLILYSALCTCDPGDIM 646
            GSPE+H++ALMGKLECSGDASLQNGL+LV+  LNQIPSYGHREVL+LYSAL +CDPGDIM
Sbjct: 147  GSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIM 206

Query: 647  ETIQKCKKSKIRCSVIGISAELYICKYLCQETGGLYYVALDELHLKELVLEHXXXXXXXX 826
            ET+QKCK SKIRCSVIG++AE++IC++LCQETGG Y VALDE H KEL+LEH        
Sbjct: 207  ETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 266

Query: 827  XXXXSNLIKMGFPQRAAEGVVSICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 1006
                 NLIKMGFPQRAAE  ++ICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTL+
Sbjct: 267  DSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLI 326

Query: 1007 SSPHLARSYHHLFPITPFNDLSPSVLRYSQNS-AKNCFGCQQSLQNP--GNQRVSCVTCP 1177
            SSPHLARSYHHLFPI PF+++S  V    ++   K CFGCQ+SL NP  GN     V+CP
Sbjct: 327  SSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCP 386

Query: 1178 NCKHIFCLDCDIYIHESLHNCPGCESFK 1261
             CK  FCLDCDIYIHESLHNCPGCESF+
Sbjct: 387  KCKQHFCLDCDIYIHESLHNCPGCESFR 414


>ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
            thaliana] gi|22087278|gb|AAM90909.1|AF499443_1
            p44/SSL1-like protein [Arabidopsis thaliana]
            gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic
            transcripion factor 2, 44 kD subunit from Homo sapiens.
            EST gb|W43325 comes from this gene [Arabidopsis thaliana]
            gi|110738828|dbj|BAF01337.1| putative transcription
            factor [Arabidopsis thaliana] gi|332189663|gb|AEE27784.1|
            transcription initiation factor TFIIH subunit H2
            [Arabidopsis thaliana]
          Length = 421

 Score =  610 bits (1574), Expect = e-172
 Identities = 292/397 (73%), Positives = 331/397 (83%), Gaps = 7/397 (1%)
 Frame = +2

Query: 122  WERTYTDERSWEALQEDESGLLRPIDNKALHHAQYRRRLRTASAV----RIQKGLIRYLY 289
            WER Y D+RSWE LQEDESGLLRPIDN A++HAQYRRRLR  SA     RIQKGLIRYLY
Sbjct: 26   WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 290  VILDFSRAATEMDYKPSRMAVMAKQVEAFIREFFDQNPLSQIGLVILKDGVAHCLTDLAG 469
            +++DFSRAA EMD++PSRMA+MAK VEAFIREFFDQNPLSQIGLV +K+GVAH LTDL G
Sbjct: 86   IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 470  SPEAHIRALMGKLECSGDASLQNGLDLVNELLNQIPSYGHREVLILYSALCTCDPGDIME 649
            SPE HI+ALMGKLE  GD+SLQN L+LV+E LNQ+PSYGHREVLILYSALCTCDPGDIME
Sbjct: 146  SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 650  TIQKCKKSKIRCSVIGISAELYICKYLCQETGGLYYVALDELHLKELVLEHXXXXXXXXX 829
            TIQKCKKSK+RCSVIG+SAE++ICK+LCQETGGLY VA+DE+HLK+L+LEH         
Sbjct: 206  TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 830  XXXSNLIKMGFPQRAAEGVVSICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVS 1009
               +NLIKMGFPQRAAEG ++ICSCHKE K+G GY CPRCKARVC+LPTEC ICGLTLVS
Sbjct: 266  FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 1010 SPHLARSYHHLFPITPFNDLSPSVLRYSQNS---AKNCFGCQQSLQNPGNQRVSCVTCPN 1180
            SPHLARSYHHLFPI PF+++ P++   + N     K+CFGCQQSL   GN+ V CVTC  
Sbjct: 326  SPHLARSYHHLFPIAPFDEV-PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRK 384

Query: 1181 CKHIFCLDCDIYIHESLHNCPGCESFKHSTNAVPMEE 1291
            CKH FCLDCDIYIHESLHNCPGCES     +   MEE
Sbjct: 385  CKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLMEE 421


>ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
            gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 421

 Score =  608 bits (1567), Expect = e-171
 Identities = 291/397 (73%), Positives = 330/397 (83%), Gaps = 7/397 (1%)
 Frame = +2

Query: 122  WERTYTDERSWEALQEDESGLLRPIDNKALHHAQYRRRLRTASAV----RIQKGLIRYLY 289
            WER Y D+RSWE LQEDESGLLRPIDN A++HAQYRRRLR  SA     RIQKGLIRYLY
Sbjct: 26   WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 290  VILDFSRAATEMDYKPSRMAVMAKQVEAFIREFFDQNPLSQIGLVILKDGVAHCLTDLAG 469
            +++DFSRAA EMD++PSRMA+MAK VEAFIREFFDQNPLSQIGLV +K+GVAH LTDL G
Sbjct: 86   IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 470  SPEAHIRALMGKLECSGDASLQNGLDLVNELLNQIPSYGHREVLILYSALCTCDPGDIME 649
            SPE HI+ALMGKLE  GD+SLQN L+LV+E LNQ+PSYGHREVLILYSALCTCDPGDIME
Sbjct: 146  SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 650  TIQKCKKSKIRCSVIGISAELYICKYLCQETGGLYYVALDELHLKELVLEHXXXXXXXXX 829
            TIQKCKKSK+RCSVIG+SAE++ICK+LCQETGGLY VA+DE+HLK+L+LEH         
Sbjct: 206  TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 830  XXXSNLIKMGFPQRAAEGVVSICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVS 1009
               +NLIKMGFPQRAAEG ++ICSCHKE K+G GY CPRCKARVC+LPTEC ICGLTLVS
Sbjct: 266  FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 1010 SPHLARSYHHLFPITPFNDLSPSVLRYSQNS---AKNCFGCQQSLQNPGNQRVSCVTCPN 1180
            SPHLARSYHHLFPI PF+++ P++   + N     K+CFGCQQSL   GN+   CVTC  
Sbjct: 326  SPHLARSYHHLFPIAPFDEV-PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPGPCVTCRK 384

Query: 1181 CKHIFCLDCDIYIHESLHNCPGCESFKHSTNAVPMEE 1291
            CKH FCLDCDIYIHESLHNCPGCES     +   MEE
Sbjct: 385  CKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLMEE 421