BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00003995
         (1337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   592   e-167
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              583   e-164
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   573   e-161
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   561   e-157
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   555   e-156

>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  592 bits (1525), Expect = e-167
 Identities = 293/410 (71%), Positives = 340/410 (82%)
 Frame = -1

Query: 1232 HVEESDVGISCFISTLPGFRGILKQRYSDFIVNEVDMDDKVVHLTSLEAPPQISEEKAVE 1053
            H+EESDVGIS +IS LPGFRGILKQRY DFIVNEVD D  VVHLTSL+APP+  E+   +
Sbjct: 3    HLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNETK 62

Query: 1052 VPDQADKSYDTELESFRAIAGDKDADTLKAFLDQIGTDFDVCAESVVLSPSSDKAHRTAV 873
            + DQ++K Y +E+E FR++ GD D + LK  +DQ+ +  +     +VLS SSDK+HRTAV
Sbjct: 63   ISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTAV 122

Query: 872  HNFFKEKLKFLVTDTIDGTDDSSKCIRVRLNSRGNNKKGRDSRKRKTRNDTPYDRRGSEH 693
            HNFFKE LKFLVTDTIDG D SSKCIRVRLNS G++  GR+SRKRK R D P+D RGS++
Sbjct: 123  HNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSDN 182

Query: 692  WPEHMGKFLMFHLYKENKETQEALGVIGKMLGLQPRSFGFAGTKDKRSVSTQRVTVFKQQ 513
            W EH+GKFL FHLYKENK+TQEA+G+IGKMLG+QPRSFGFAGTKDKRSVSTQRVTVFKQ 
Sbjct: 183  WSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQH 242

Query: 512  ASRIAALNIRLIGIKVGNFCQVXXXXXXXXXXXNHFTITLRGVVADSEDIIRSSADALGR 333
            A+R+AALN RLIGIKVG+FC V           N FTITLRGVVADSE+ I++SADALGR
Sbjct: 243  ANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADALGR 302

Query: 332  CGFINYFGLQRFGSGSVPTHHIGAALLRGEWKSAVELILDPRESDKDEITRVRELYKESR 153
             GFINYFGLQRFGSGSVPTH IGAALLRGEW++AV LILDPRE ++D I + RE YKES 
Sbjct: 303  LGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKESD 362

Query: 152  DIERTLKQLPRYMVAERAILQCLRKYPENYLQALQAIPRTLRMMYVHSYQ 3
            DIE TL+Q PR++VAERAILQCL+KYP NYLQAL+AIPRTLRMMYVHSYQ
Sbjct: 363  DIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQ 412


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  583 bits (1502), Expect = e-164
 Identities = 292/410 (71%), Positives = 338/410 (82%)
 Frame = -1

Query: 1232 HVEESDVGISCFISTLPGFRGILKQRYSDFIVNEVDMDDKVVHLTSLEAPPQISEEKAVE 1053
            H+EESDVGIS +IS LPGFRGILKQRY DFIVNEVD D  VVHLTSL+APP+  E+   +
Sbjct: 3    HLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNETK 62

Query: 1052 VPDQADKSYDTELESFRAIAGDKDADTLKAFLDQIGTDFDVCAESVVLSPSSDKAHRTAV 873
            + DQ++K Y +E+E FR++ GD D + LK  +DQ+ +  +     +VLS SSDK+HRTAV
Sbjct: 63   ISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTAV 122

Query: 872  HNFFKEKLKFLVTDTIDGTDDSSKCIRVRLNSRGNNKKGRDSRKRKTRNDTPYDRRGSEH 693
            HNFFKE LKFLVTDTIDG D SSKCIRVRLNS G++  GR+SRKRK R D P+D RGS++
Sbjct: 123  HNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSDN 182

Query: 692  WPEHMGKFLMFHLYKENKETQEALGVIGKMLGLQPRSFGFAGTKDKRSVSTQRVTVFKQQ 513
            W EH+GKFL FHLYKENK+TQEA+G+IGKMLG+QPRSFGFAGTKDKRSVSTQRVTVFKQ 
Sbjct: 183  WSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQH 242

Query: 512  ASRIAALNIRLIGIKVGNFCQVXXXXXXXXXXXNHFTITLRGVVADSEDIIRSSADALGR 333
            A+R+AALN RLIGIKVG+FC V           N FTITLRGVVADSE+ I++SADALGR
Sbjct: 243  ANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADALGR 302

Query: 332  CGFINYFGLQRFGSGSVPTHHIGAALLRGEWKSAVELILDPRESDKDEITRVRELYKESR 153
             GFINYFGLQRFGSGSVPTH IGAALLRGEW++AV LILDPRE D   + + RE YKES 
Sbjct: 303  LGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGD-ILLLKAREYYKESD 361

Query: 152  DIERTLKQLPRYMVAERAILQCLRKYPENYLQALQAIPRTLRMMYVHSYQ 3
            DIE TL+Q PR++VAERAILQCL+KYP NYLQAL+AIPRTLRMMYVHSYQ
Sbjct: 362  DIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQ 411


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  573 bits (1477), Expect = e-161
 Identities = 296/421 (70%), Positives = 338/421 (80%), Gaps = 12/421 (2%)
 Frame = -1

Query: 1229 VEESDVGISCFISTLPGFRGILKQRYSDFIVNEVDMDDKVVHLTSLEAPPQI---SEEKA 1059
            +EESDVGISC+IS +PGFRGILKQRYSDFIVNEVD +  VVHLTSL  P +I   +EE+ 
Sbjct: 52   IEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAEERE 111

Query: 1058 VEVPDQADKSYDTELESFRAIAGDKDADTLKAFLDQ-IGTDFDVCAESVVLSPSSDKAHR 882
             E+ +Q  K+Y  E+ESFR +AGD D   L+AF++Q I  D  +    ++LSP SDKAHR
Sbjct: 112  EEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDKAHR 171

Query: 881  TAVHNFFKEKLKFLVTDTIDGTDDSSKCIRVRLNSRGN-NKKGRDSRKRKTRNDTPYDRR 705
            TA HNFFKEKLKFLVTDT+DG D SSKCIRVRLNSRGN N+  R+S+KRK RND P+D R
Sbjct: 172  TATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPFDSR 231

Query: 704  GSEHWPEHMGKFLMFHLYKENKETQEALGVIGKMLGLQPRSFGFAGTKDKRSVSTQRVTV 525
            GS+HWPEH+GKFL FHLYKENK+TQEA+G+IGKMLG+QPRSFGFAGTKDKRSVSTQRVTV
Sbjct: 232  GSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTV 291

Query: 524  FKQQASRIAALNIRLIGIKVGNFCQVXXXXXXXXXXXNHFTITLRGVVADSEDIIRSSAD 345
            FKQ ASR+AALN RLIGIKVG+FC V           N FT+TLRGVVADSED I+ SAD
Sbjct: 292  FKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKGSAD 351

Query: 344  ALGRCGFINYFGLQRFGSGSVPTHHIGAALLRGEWKSAVELILDPRESDKDEIT------ 183
            +LGR GFINYFGLQRFGSGSVPTH IGAALLRGEWK AV +ILDPRE D   +       
Sbjct: 352  SLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICFMWM 411

Query: 182  -RVRELYKESRDIERTLKQLPRYMVAERAILQCLRKYPENYLQALQAIPRTLRMMYVHSY 6
               RE YKES DI+ TL+QLPRY+ AERA+LQCL+K P NYLQAL+AIPRTLRMMYVHSY
Sbjct: 412  RMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYVHSY 471

Query: 5    Q 3
            Q
Sbjct: 472  Q 472


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  561 bits (1447), Expect = e-157
 Identities = 280/413 (67%), Positives = 336/413 (81%), Gaps = 4/413 (0%)
 Frame = -1

Query: 1229 VEESDVGISCFISTLPGFRGILKQRYSDFIVNEVDMDDKVVHLTSLEAPPQ--ISEEKAV 1056
            V+E+DVGISCFIS LPGFRGILKQRY+DFIVNEVDMD  VVHLTSL+ PP+  + EE   
Sbjct: 40   VDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEEDKA 99

Query: 1055 EVPDQADKSYDTELESFRAIAGDKDADTLKAFLDQI--GTDFDVCAESVVLSPSSDKAHR 882
            +  D   ++Y + +ESF++I+   DA+ L+  ++Q+  GTD +V    VVL PSSDK+ R
Sbjct: 100  KSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLP--VVLDPSSDKSKR 157

Query: 881  TAVHNFFKEKLKFLVTDTIDGTDDSSKCIRVRLNSRGNNKKGRDSRKRKTRNDTPYDRRG 702
            TA+HNF KE  KFLVTDT+DG D +SKCIRVR+NS  NN +G  S+KRK R D P+D RG
Sbjct: 158  TAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSRG 217

Query: 701  SEHWPEHMGKFLMFHLYKENKETQEALGVIGKMLGLQPRSFGFAGTKDKRSVSTQRVTVF 522
            SEHWPEH+GKFL FHLYKENK+TQEALG+IGKMLG+QP+SFGF+GTKDKRSVSTQRVTVF
Sbjct: 218  SEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVF 277

Query: 521  KQQASRIAALNIRLIGIKVGNFCQVXXXXXXXXXXXNHFTITLRGVVADSEDIIRSSADA 342
            KQQAS++AALN RL GIKVG+FC V           N FTITLRGVVADSE+ I+ SA++
Sbjct: 278  KQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAES 337

Query: 341  LGRCGFINYFGLQRFGSGSVPTHHIGAALLRGEWKSAVELILDPRESDKDEITRVRELYK 162
            LG+ GFINYFGLQRFGSGSVPTHH+GAALL+GEWK AV++ILDPRE+++  +   RE YK
Sbjct: 338  LGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDAREYYK 397

Query: 161  ESRDIERTLKQLPRYMVAERAILQCLRKYPENYLQALQAIPRTLRMMYVHSYQ 3
            E+ DI+ TL+QLPRY+VAERAILQCL+K P NYLQAL+ IPRTLRMMYVHSYQ
Sbjct: 398  ETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQ 450


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  555 bits (1431), Expect = e-156
 Identities = 285/415 (68%), Positives = 330/415 (79%), Gaps = 1/415 (0%)
 Frame = -1

Query: 1244 MNKSHVEESDVGISCFISTLPGFRGILKQRYSDFIVNEVDMDDKVVHLTSLEAPPQ-ISE 1068
            M    V ESDVGI  +IS+LPGFRGILKQRYSDFIVNEVD D  VVHLTSL+APP+ I  
Sbjct: 38   MTTKSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEVIVS 97

Query: 1067 EKAVEVPDQADKSYDTELESFRAIAGDKDADTLKAFLDQIGTDFDVCAESVVLSPSSDKA 888
            E    +     +SY +E+E FR++AGD DA+ L+ FL QI +  +     +V SP +DK 
Sbjct: 98   ESGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKT 157

Query: 887  HRTAVHNFFKEKLKFLVTDTIDGTDDSSKCIRVRLNSRGNNKKGRDSRKRKTRNDTPYDR 708
            HRTAVHNFFK K KFLVTDTIDG D SSKC+RVR++S   N +GR S+KRK R D P+D 
Sbjct: 158  HRTAVHNFFK-KFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKPFDS 216

Query: 707  RGSEHWPEHMGKFLMFHLYKENKETQEALGVIGKMLGLQPRSFGFAGTKDKRSVSTQRVT 528
            RGS++WPEH+GKFL FHLYKENK+TQEALG+IGKMLG+Q RSFGFAGTKDKRS+STQRVT
Sbjct: 217  RGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQRVT 276

Query: 527  VFKQQASRIAALNIRLIGIKVGNFCQVXXXXXXXXXXXNHFTITLRGVVADSEDIIRSSA 348
            VFKQ ASRIAALN RLIGIK+GNF  +           N FTITLRGVVA+SED+I++SA
Sbjct: 277  VFKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIKASA 336

Query: 347  DALGRCGFINYFGLQRFGSGSVPTHHIGAALLRGEWKSAVELILDPRESDKDEITRVREL 168
            +ALGR GFINYFGLQRFGSGSVPTH +GA+LLRGEWK AV +ILDPRE D   + R R+ 
Sbjct: 337  EALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRARDY 396

Query: 167  YKESRDIERTLKQLPRYMVAERAILQCLRKYPENYLQALQAIPRTLRMMYVHSYQ 3
            YKES DI+ TLKQLPRY+VAERAILQCL+K P NYLQAL+AIPRTLRMMYVHSYQ
Sbjct: 397  YKESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 451