BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00003961
         (1529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu...   336   1e-89
ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni...   333   7e-89
ref|XP_002307825.1| predicted protein [Populus trichocarpa] gi|2...   330   5e-88
ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|2...   330   6e-88
ref|NP_174086.1| splicing factor U2af small subunit A [Arabidops...   326   9e-87

>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
            gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary factor,
            small subunit, putative [Ricinus communis]
          Length = 272

 Score =  336 bits (861), Expect = 1e-89
 Identities = 172/237 (72%), Positives = 180/237 (75%), Gaps = 10/237 (4%)
 Frame = -3

Query: 1476 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYHRPDMITP 1297
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMY RPDMITP
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 1296 GVDSQGQPIDPRKIQXXXXXXXXXXXXXLSKFGEIESLNVCDNLADHMIGNVYLQFKEED 1117
            GVD+QGQPIDPRKIQ             L KFGEIESLNVCDNLADHMIGNVY+QF+EED
Sbjct: 61   GVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 1116 XXXXXXXXXQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKMIGRDL 937
                     QGRFYSGRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+IGRDL
Sbjct: 121  QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 936  RRKLFGXXXXXXXXXXXXXXXXXXXXXREHRD--RERDYK--------RRSGDRHDR 796
            RRKLFG                     RE  +  RERDY+        RRSGDRHDR
Sbjct: 181  RRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSGDRHDR 237


>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
            sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
            splicing factor U2af small subunit B-like [Cucumis
            sativus]
          Length = 276

 Score =  333 bits (854), Expect = 7e-89
 Identities = 170/234 (72%), Positives = 178/234 (76%), Gaps = 7/234 (2%)
 Frame = -3

Query: 1476 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYHRPDMITP 1297
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMY RPDMITP
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 1296 GVDSQGQPIDPRKIQXXXXXXXXXXXXXLSKFGEIESLNVCDNLADHMIGNVYLQFKEED 1117
            GVD+QGQPIDPRKIQ             L KFGEIESLNVCDNLADHMIGNVY+QF+EED
Sbjct: 61   GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 1116 XXXXXXXXXQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKMIGRDL 937
                     QGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVKMIG+DL
Sbjct: 121  QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 936  RRKLFGXXXXXXXXXXXXXXXXXXXXXREHRDRERDYK-------RRSGDRHDR 796
            RRKLFG                     +EH  RERDY+        RS +RHDR
Sbjct: 181  RRKLFG-RYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDR 233


>ref|XP_002307825.1| predicted protein [Populus trichocarpa] gi|222857274|gb|EEE94821.1|
            predicted protein [Populus trichocarpa]
          Length = 272

 Score =  330 bits (847), Expect = 5e-88
 Identities = 166/233 (71%), Positives = 178/233 (76%), Gaps = 6/233 (2%)
 Frame = -3

Query: 1476 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYHRPDMITP 1297
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSN YHRPDMITP
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNTYHRPDMITP 60

Query: 1296 GVDSQGQPIDPRKIQXXXXXXXXXXXXXLSKFGEIESLNVCDNLADHMIGNVYLQFKEED 1117
            GVD+QGQP+DP KIQ             LSKFGEIE+LNVCDNLADHMIGNVY+QFKEED
Sbjct: 61   GVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFKEED 120

Query: 1116 XXXXXXXXXQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKMIGRDL 937
                     QGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK+IG+DL
Sbjct: 121  QAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLIGKDL 180

Query: 936  RRKLFGXXXXXXXXXXXXXXXXXXXXXREHRDRERDYK------RRSGDRHDR 796
            RRKLFG                     R++  RERDY+      R +G R+DR
Sbjct: 181  RRKLFGRYRGYRVSRSRSRSVSPRRRDRDYDRRERDYRDRDRDYRGNGRRNDR 233


>ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|222842340|gb|EEE79887.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  330 bits (846), Expect = 6e-88
 Identities = 166/241 (68%), Positives = 181/241 (75%), Gaps = 10/241 (4%)
 Frame = -3

Query: 1476 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYHRPDMITP 1297
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMY RPDMITP
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 1296 GVDSQGQPIDPRKIQXXXXXXXXXXXXXLSKFGEIESLNVCDNLADHMIGNVYLQFKEED 1117
            GVD+QGQP+DP KIQ             L+KFGEIESLNVCDNLADHMIGNVY+ FKEED
Sbjct: 61   GVDAQGQPLDPHKIQEHFEEFYEDIFEELNKFGEIESLNVCDNLADHMIGNVYVLFKEED 120

Query: 1116 XXXXXXXXXQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKMIGRDL 937
                     QGRFYSGRPIIADFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK+IGRDL
Sbjct: 121  QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 180

Query: 936  RRKLFGXXXXXXXXXXXXXXXXXXXXXREHRDRERDYK----------RRSGDRHDRYER 787
            RRKLFG                     R++  RERDY+          R +G R+D+Y+R
Sbjct: 181  RRKLFGRYRGYRVSRSRSRSVSPRKRERDYDRRERDYRDRDRDRDRDYRGNGRRNDKYDR 240

Query: 786  D 784
            +
Sbjct: 241  E 241


>ref|NP_174086.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
            gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName:
            Full=Splicing factor U2af small subunit A; AltName:
            Full=U2 auxiliary factor 35 kDa subunit A; AltName:
            Full=U2 small nuclear ribonucleoprotein auxiliary factor
            small subunit A; Short=U2 snRNP auxiliary factor small
            subunit A; AltName: Full=Zinc finger CCCH
            domain-containing protein 8; Short=AtC3H8
            gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity to
            gb|Y18349 U2 snRNP auxiliary factor, small subunit from
            Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come from
            this gene [Arabidopsis thaliana]
            gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10 [Arabidopsis
            thaliana] gi|12744991|gb|AAK06875.1|AF344324_1 putative
            U2 snRNP auxiliary factor [Arabidopsis thaliana]
            gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
            factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
            At1g27650/T22C5_2 [Arabidopsis thaliana]
            gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
            factor protein [Arabidopsis thaliana]
            gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
            factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
            At1g27650/T22C5_2 [Arabidopsis thaliana]
            gi|332192737|gb|AEE30858.1| splicing factor U2af small
            subunit A [Arabidopsis thaliana]
          Length = 296

 Score =  326 bits (836), Expect = 9e-87
 Identities = 166/251 (66%), Positives = 179/251 (71%), Gaps = 20/251 (7%)
 Frame = -3

Query: 1476 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYHRPDMITP 1297
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMY RPDMITP
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 1296 GVDSQGQPIDPRKIQXXXXXXXXXXXXXLSKFGEIESLNVCDNLADHMIGNVYLQFKEED 1117
            GVD+QGQP+DPRKIQ             L KFGEIESLN+CDNLADHMIGNVY+QFKEED
Sbjct: 61   GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 1116 XXXXXXXXXQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKMIGRDL 937
                     QGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK++ R+L
Sbjct: 121  QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 936  RRKLFG---------------XXXXXXXXXXXXXXXXXXXXXREHRDRERDYKR-----R 817
            RRKLFG                                      HRDR+R++ R     R
Sbjct: 181  RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 816  SGDRHDRYERD 784
            S +R +R ERD
Sbjct: 241  SSERSERQERD 251