BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00003635
         (1286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   103   3e-37
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    99   6e-36
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    85   5e-35
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    75   2e-33
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    92   2e-33

>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  103 bits (256), Expect(4) = 3e-37
 Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +1

Query: 190 GDFNDVLAREEKMGGIERSDASMHMFREFVKDCELLDLGYVGHSYIWWNRPDGEQVIKAR 369
           GDFN++ + EEK GG  R +  M  FRE + DC + DLGYVG+ + W        +I+ R
Sbjct: 136 GDFNEITSIEEKEGGAPRCERVMDAFREVIDDCAVKDLGYVGNRFTWQRGNSPSTLIRER 195

Query: 370 FDRSLANA*WCLDFPKSTCTHLYMIGADHCPLLLDT--EAKL*KSKRRFVFDKCWVGKEG 543
            DR LAN  WC +FP     HL    +DH PLLL T       +  + F F+  W+ KE 
Sbjct: 196 LDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEE 255

Query: 544 CEETIWEVWS 573
           C + + E W+
Sbjct: 256 CGKIVEEAWN 265



 Score = 60.5 bits (145), Expect(4) = 3e-37
 Identities = 31/91 (34%), Positives = 48/91 (52%)
 Frame = +1

Query: 934  GAANIEGVVLEYFTNIFRANSGSTPELTTNTVDHRVNGEMNSQLTKIITSEEVKHVIFEM 1113
            G   I GVV  YF  +F  +S    EL    + H V+ +MN+ L  + + +EVK  +F M
Sbjct: 384  GREEICGVVQHYFEGLFATDSPVNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAM 443

Query: 1114 PADKSPSPDDMTVSFFQSY*HIISLDIVRVV 1206
              +K+P  D +   FFQ + HI+  D++  V
Sbjct: 444  HPNKAPGIDGLHALFFQKFWHILGSDVISFV 474



 Score = 37.4 bits (85), Expect(4) = 3e-37
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +3

Query: 636 SLIEWCKRNNLNSRVRIADLQDKIKEMYESSDGDRETLVS---LERE*DTVWGEEEQYWQ 806
           SL  W  +   N + R  +    +  + +  D D  TL     +  + D +   EE YW 
Sbjct: 282 SLSTWATKTFGNLKKRKKEALTLLNGL-QQRDPDASTLEQCRIVSGDLDEIHRLEESYWH 340

Query: 807 VRSKEKYLKQGDKNTKYF 860
            R++   ++ GDKNTKYF
Sbjct: 341 ARARANEIRDGDKNTKYF 358



 Score = 22.7 bits (47), Expect(4) = 3e-37
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 836 G*QKYKIFHASAMXXXXXXXXXXXDNENGVWQEGQ 940
           G +  K FH  A             +ENGVW++G+
Sbjct: 351 GDKNTKYFHHKASQRKRRNTINELLDENGVWKKGR 385


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 99.0 bits (245), Expect(3) = 6e-36
 Identities = 55/150 (36%), Positives = 74/150 (49%)
 Frame = +1

Query: 142  LLRSFAPPNGWGWCLLGDFNDVLAREEKMGGIERSDASMHMFREFVKDCELLDLGYVGHS 321
            L+ S  P     W +LGDFN+VL   EK GG       + +FR+F+ +  L DL + G  
Sbjct: 725  LMYSRFPVQSLPWLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKGPG 784

Query: 322  YIWWNRPDGEQVIKARFDRSLANA*WCLDFPKSTCTHLYMIGADHCPLLLDTEAKL*KSK 501
            + W+    G   IK R DR+L N  W    P +   HL  IG+DH PLLLD+  K+    
Sbjct: 785  FSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKT 844

Query: 502  RRFVFDKCWVGKEGCEETIWEVWSEEFQGS 591
            R F F++ W   E   + I   W   F GS
Sbjct: 845  RLFRFEQMWTTHEEYSDVIQRSWPPAFGGS 874



 Score = 50.8 bits (120), Expect(3) = 6e-36
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +3

Query: 648  WCKRNNLNSRVRIADLQDKIKEMYESSDGDRETLVSLERE*DT-VWGEEEQYWQVRSKEK 824
            W K    N  V++ADL   I+++++S+  D    +++  +  T +W ++E YW  RS+  
Sbjct: 893  WSKEKFSNPSVQVADLLSDIEKLHQSNPPDAHHQINILTDQVTKLWTQDEMYWHQRSRVN 952

Query: 825  YLKQGDKNTKYF 860
            +LK GD+N+ +F
Sbjct: 953  WLKLGDQNSSFF 964



 Score = 49.3 bits (116), Expect(3) = 6e-36
 Identities = 24/69 (34%), Positives = 40/69 (57%)
 Frame = +1

Query: 961  LEYFTNIFRANSGSTPELTTNTVDHRVNGEMNSQLTKIITSEEVKHVIFEMPADKSPSPD 1140
            L+YFT ++++N     E   + VD  V  EMN  L+  ++  EVK  +F++ A K+P PD
Sbjct: 999  LDYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSSPVSLLEVKKAVFDLGATKAPGPD 1058

Query: 1141 DMTVSFFQS 1167
              +  F+Q+
Sbjct: 1059 GFSGIFYQN 1067


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 84.7 bits (208), Expect(3) = 5e-35
 Identities = 53/144 (36%), Positives = 69/144 (47%)
 Frame = +1

Query: 178 WCLLGDFNDVLAREEKMGGIERSDASMHMFREFVKDCELLDLGYVGHSYIWWNRPDGEQV 357
           W L GDFND+L   EK GG  R +     FR FV    L D+ + G+S + W        
Sbjct: 75  WLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNS-LSWRGTRYSHF 133

Query: 358 IKARFDRSLANA*WCLDFPKSTCTHLYMIGADHCPLLLDTEAKL*KSKRRFVFDKCWVGK 537
           IK+R DR+L N  W   FP S C +L   G+DH PL+    A   K  + F FD+    K
Sbjct: 134 IKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREK 193

Query: 538 EGCEETIWEVWSEEFQGSRWFVVS 609
           E     + EVW    Q S  + +S
Sbjct: 194 EEIRALVKEVWELARQDSVLYKIS 217



 Score = 63.2 bits (152), Expect(3) = 5e-35
 Identities = 30/92 (32%), Positives = 49/92 (53%)
 Frame = +1

Query: 946  IEGVVLEYFTNIFRANSGSTPELTTNTVDHRVNGEMNSQLTKIITSEEVKHVIFEMPADK 1125
            I   +  YF NIF  ++ S  ++    +   ++   N +L KI +  E+K  +F + ADK
Sbjct: 326  IASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADK 385

Query: 1126 SPSPDDMTVSFFQSY*HIISLDIVRVVDIFFL 1221
            +P PD  + SFF +Y  II  D+ R +  FF+
Sbjct: 386  APGPDGFSASFFHAYWDIIEADVSRDIRSFFV 417



 Score = 48.1 bits (113), Expect(3) = 5e-35
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +3

Query: 630 RVSLIEWCKRNNLNSRVRIADLQDKIKEMYESSDGDRETLVSLERE*DTVWGEEEQYWQV 809
           R S+I+W K  N NS   I   Q  ++    +   D   + S+ +E +  + +EE +W+ 
Sbjct: 220 RQSIIKWTKEQNSNSAKAIKKAQQALESALSADIPDPSLIGSITQELEAAYRQEELFWKQ 279

Query: 810 RSKEKYLKQGDKNTKYF 860
            S+ ++L  GD+N  YF
Sbjct: 280 WSRVQWLNSGDRNKGYF 296


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 75.1 bits (183), Expect(4) = 2e-33
 Identities = 42/139 (30%), Positives = 65/139 (46%)
 Frame = +1

Query: 178 WCLLGDFNDVLAREEKMGGIERSDASMHMFREFVKDCELLDLGYVGHSYIWWNRPDGEQV 357
           W L+GDFN++L+  EK+GG +R + +   FR  V  C+L D+  +G  + W         
Sbjct: 512 WILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERH-SHT 570

Query: 358 IKARFDRSLANA*WCLDFPKSTCTHLYMIGADHCPLLLDTEAKL*KSKRRFVFDKCWVGK 537
           +K   DR+  N+     FP +    L   G+DH PL L  E    +  R F FDK  +  
Sbjct: 571 VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLEV 630

Query: 538 EGCEETIWEVWSEEFQGSR 594
              +  +   W++   G R
Sbjct: 631 PHFKTYVKAGWNKAINGQR 649



 Score = 60.5 bits (145), Expect(4) = 2e-33
 Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
 Frame = +3

Query: 657 RNNLNSRVRIADLQDKI-KEMYESSDGDRETLVSLERE*DTVWGEEEQYWQVRSKEKYLK 833
           ++NLNSR+RI  LQ  + K M   +  +R T+  ++RE    + +EE+YWQ +S+ +++K
Sbjct: 669 KSNLNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMK 728

Query: 834 QGDKNTKYF 860
           +GD+NT++F
Sbjct: 729 EGDRNTEFF 737



 Score = 51.2 bits (121), Expect(4) = 2e-33
 Identities = 25/85 (29%), Positives = 45/85 (52%)
 Frame = +1

Query: 964  EYFTNIFRANSGSTPELTTNTVDHRVNGEMNSQLTKIITSEEVKHVIFEMPADKSPSPDD 1143
            E+FT ++ +N      +        V  ++N  LTK ++  E+ + I  +  DK+P PD 
Sbjct: 773  EFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDG 832

Query: 1144 MTVSFFQSY*HIISLDIVRVVDIFF 1218
            +T  F++S   I+  D+++ V IFF
Sbjct: 833  LTARFYKSCWEIVGPDVIKEVKIFF 857



 Score = 23.5 bits (49), Expect(4) = 2e-33
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 1221 SSRLLNSINDTPVCLIPK 1274
            +S +  SIN T +C+IPK
Sbjct: 859  TSYMKQSINHTNICMIPK 876


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 91.7 bits (226), Expect(4) = 2e-33
 Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
 Frame = +1

Query: 178 WCLLGDFNDVLAREEKMGGIERSDASMHMFREFVKDCELLDLGYVGHSYIWW-NRPDGEQ 354
           W L GDFN+++   EK+GG  R ++S   FR+ +  C L ++ + G+ + W+ NR D  +
Sbjct: 131 WMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRND--E 188

Query: 355 VIKARFDRSLANA*WCLDFPKSTCTHLYMIGADHCPLLLDTEAKL*KSKRRFVFDKCWVG 534
           +++ R DR++AN  W   FP++  T+L  I +DH PL+ +      +    F +DK WV 
Sbjct: 189 LVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQ 248

Query: 535 KEGCEETIWEVWSEE 579
           +EG ++ +   WS++
Sbjct: 249 REGFKDLLCNFWSQQ 263



 Score = 56.2 bits (134), Expect(4) = 2e-33
 Identities = 27/77 (35%), Positives = 45/77 (58%)
 Frame = +3

Query: 630 RVSLIEWCKRNNLNSRVRIADLQDKIKEMYESSDGDRETLVSLERE*DTVWGEEEQYWQV 809
           R  + +W + +  +S VRI +LQ K+    +    DR  L  L++E    +  EEQ+WQ 
Sbjct: 279 RREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQE 338

Query: 810 RSKEKYLKQGDKNTKYF 860
           +S+  +++ GD+NTKYF
Sbjct: 339 KSRIMWMRNGDRNTKYF 355



 Score = 40.8 bits (94), Expect(4) = 2e-33
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 967  YFTNIFRANS-GSTPELTTNTVDHRVNGEMNSQLTKIITSEEVKHVIFEMPADKSPSPDD 1143
            YF  +F +   G T E   N     V+ +MN+ L   IT EEV+   F +   K P PD 
Sbjct: 392  YFKKLFASEDVGYTVEELENLTP-LVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDG 450

Query: 1144 MTVSFFQSY*HIISLDIVRVVDIFF 1218
            M    +Q +   +   I  +V  FF
Sbjct: 451  MNGFLYQQFWETMGDQITEMVQAFF 475



 Score = 21.6 bits (44), Expect(4) = 2e-33
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 1221 SSRLLNSINDTPVCLIPKKL 1280
            S  +   +N T +CLIPK L
Sbjct: 477  SGSIEEGMNKTNICLIPKIL 496