BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00003491
         (1487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   461   e-127
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   446   e-123
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              444   e-122
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   437   e-120
ref|XP_003536335.1| PREDICTED: uncharacterized RNA pseudouridine...   437   e-120

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  461 bits (1187), Expect = e-127
 Identities = 240/379 (63%), Positives = 283/379 (74%), Gaps = 12/379 (3%)
 Frame = -3

Query: 1422 FTSLHLSRPLNRTTHLHFRTL-ITCSLSTSSKPD--------PVTNSATEEDGQLYIPWI 1270
            F+S HLSRP       HFRT+ +  S+S  S           P + +   +   L IPWI
Sbjct: 19   FSSFHLSRP--SLARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQSETLLIPWI 76

Query: 1269 V---NGNSAFMNKPPPSNLLXXXXXXXXXXXXXXXKIVKARADVEVNSKMKLSKAARRYY 1099
            V   NGN    + PP   L                K       V V  K   SKAARR+Y
Sbjct: 77   VRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTARAVAVEPKY--SKAARRFY 134

Query: 1098 NENYRDQPQRLAKVLACAGVASRRSCEELIFEGKVTVNGSVCNTPQTKVDPGRDVVYVNG 919
            NEN+RD PQRL+KVLA AGVASRR+ EELIFEG+VTVNGSVCNTPQT+VDP RD++YVNG
Sbjct: 135  NENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPARDMIYVNG 194

Query: 918  SRLPKKLPPKVYLALNKPKGYICSSGEKETKSVLSLFSDFMERWDRKNDGISKPRLFTVG 739
            +RLPKKLPPKVYLALNKPKGYICSSGEKE+KSVL LF D+++ W+++N G+ KPR+FTVG
Sbjct: 195  NRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPKPRIFTVG 254

Query: 738  RLDVNTTGLIIVTNDGEFAHKLSHPSFNLSKEYIVTIDGEVNKRHLLKVSEGTIIEGVQC 559
            RLDV TTGLII+TNDG+FA KLSHPS  LSKEYI TIDG VNKRHL+ +SEGT+IEGV C
Sbjct: 255  RLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISEGTVIEGVHC 314

Query: 558  TPDVVELLPKQPDISRPRLRIVVHEGRHHEVREIVKHAGLQVYTLKRVRIGGFRLPSDLG 379
            TPD VELLP QP+IS+PRLR+VVHEGR+HEVRE+VK AGLQ+++LKR+RIGGFRLPSDLG
Sbjct: 315  TPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIGGFRLPSDLG 374

Query: 378  IGKHAELTQGNLRALGWKA 322
             GKH EL QG+L+ALGWK+
Sbjct: 375  HGKHVELKQGDLKALGWKS 393


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  446 bits (1148), Expect = e-123
 Identities = 231/366 (63%), Positives = 276/366 (75%), Gaps = 19/366 (5%)
 Frame = -3

Query: 1365 TLITCSLSTS-----SKPDPVTNSATEED--------GQLYIPWIVNGNSAFMN--KPPP 1231
            T IT SL  +      KP P   +  + D        GQL+IPWIV G    +     PP
Sbjct: 32   TRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPP 91

Query: 1230 SNLLXXXXXXXXXXXXXXXKIVKARADVEVNSKMKL----SKAARRYYNENYRDQPQRLA 1063
            + L+               K VK  +   V +K++     SKAARR+YNEN+RDQ QRL+
Sbjct: 92   ARLIHAIADAKTQPKKKKDK-VKKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLS 150

Query: 1062 KVLACAGVASRRSCEELIFEGKVTVNGSVCNTPQTKVDPGRDVVYVNGSRLPKKLPPKVY 883
            KVLA AGVASRRS E LIFEGKVTVNGSVCNTPQT+VDPGRD +YVNG+RLPKKLPPK+Y
Sbjct: 151  KVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDSIYVNGNRLPKKLPPKIY 210

Query: 882  LALNKPKGYICSSGEKETKSVLSLFSDFMERWDRKNDGISKPRLFTVGRLDVNTTGLIIV 703
            +ALNKPKGYICS GEKE+KSV+ L  D+ + WD++N G+ KPRLFTVGRLDV TTGLIIV
Sbjct: 211  IALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIV 270

Query: 702  TNDGEFAHKLSHPSFNLSKEYIVTIDGEVNKRHLLKVSEGTIIEGVQCTPDVVELLPKQP 523
            TNDG+FA +++HPS NLSKEYI T+DG V+KRHL  VSEGT+IEGV+C PD VELLP+QP
Sbjct: 271  TNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQP 330

Query: 522  DISRPRLRIVVHEGRHHEVREIVKHAGLQVYTLKRVRIGGFRLPSDLGIGKHAELTQGNL 343
            D  RPRLRIVVHEGR+HEVRE+VK+AGL++++LKRVRIGGFRLPSDLG+GKHAEL Q +L
Sbjct: 331  DRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDL 390

Query: 342  RALGWK 325
            + LGWK
Sbjct: 391  KTLGWK 396


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  444 bits (1143), Expect = e-122
 Identities = 210/269 (78%), Positives = 245/269 (91%)
 Frame = -3

Query: 1128 KLSKAARRYYNENYRDQPQRLAKVLACAGVASRRSCEELIFEGKVTVNGSVCNTPQTKVD 949
            K SKAARR+YNEN+RD PQRL+KVLA AGVASRR+ EELIFEG+VTVNGSVCNTPQT+VD
Sbjct: 28   KYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVD 87

Query: 948  PGRDVVYVNGSRLPKKLPPKVYLALNKPKGYICSSGEKETKSVLSLFSDFMERWDRKNDG 769
            P RD++YVNG+RLPKKLPPKVYLALNKPKGYICSSGEKE+KSVL LF D+++ W+++N G
Sbjct: 88   PARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPG 147

Query: 768  ISKPRLFTVGRLDVNTTGLIIVTNDGEFAHKLSHPSFNLSKEYIVTIDGEVNKRHLLKVS 589
            + KPR+FTVGRLDV TTGLII+TNDG+FA KLSHPS  LSKEYI TIDG VNKRHL+ +S
Sbjct: 148  VPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAIS 207

Query: 588  EGTIIEGVQCTPDVVELLPKQPDISRPRLRIVVHEGRHHEVREIVKHAGLQVYTLKRVRI 409
            EGT+IEGV CTPD VELLP QP+IS+PRLR+VVHEGR+HEVRE+VK AGLQ+++LKR+RI
Sbjct: 208  EGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRI 267

Query: 408  GGFRLPSDLGIGKHAELTQGNLRALGWKA 322
            GGFRLPSDLG GKH EL QG+L+ALGWK+
Sbjct: 268  GGFRLPSDLGHGKHVELKQGDLKALGWKS 296


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  437 bits (1124), Expect = e-120
 Identities = 221/378 (58%), Positives = 271/378 (71%), Gaps = 33/378 (8%)
 Frame = -3

Query: 1359 ITCSLSTSS--------------KPDPVTNSATEEDGQLYIPWIVNGNSAFMN--KPPPS 1228
            + CS+S+SS              KP P +        QL+IPWIV G+   +     PP+
Sbjct: 34   LRCSVSSSSSSEPIEFDISFAPPKPKPSSTRGGATPQQLFIPWIVRGDDGTLKLQSQPPA 93

Query: 1227 NLLXXXXXXXXXXXXXXXKIVKARADVEVNS-----------------KMKLSKAARRYY 1099
             L+                  K +     +S                 K KLSKAARR+Y
Sbjct: 94   RLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASASSPASHSEVKPKLSKAARRFY 153

Query: 1098 NENYRDQPQRLAKVLACAGVASRRSCEELIFEGKVTVNGSVCNTPQTKVDPGRDVVYVNG 919
            NEN+++ PQRL+KVLA AGVASRR+ EELIF+GKVTVNG +CNTPQT+VDP RD++YVNG
Sbjct: 154  NENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNG 213

Query: 918  SRLPKKLPPKVYLALNKPKGYICSSGEKETKSVLSLFSDFMERWDRKNDGISKPRLFTVG 739
            +R+PKKLPPKVY ALNKPKGYICSSGEKE KSV+SLF +++  WD++N G  KPRLFTVG
Sbjct: 214  NRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYLSSWDKRNPGTPKPRLFTVG 273

Query: 738  RLDVNTTGLIIVTNDGEFAHKLSHPSFNLSKEYIVTIDGEVNKRHLLKVSEGTIIEGVQC 559
            RLDV TTGLI+VTNDG+FA KLSHPS +L KEYI T+ G+++KRHL+ +SEGTI+EGV C
Sbjct: 274  RLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTIVEGVHC 333

Query: 558  TPDVVELLPKQPDISRPRLRIVVHEGRHHEVREIVKHAGLQVYTLKRVRIGGFRLPSDLG 379
             PD VEL+PKQ DI R RLRIVVHEGR+HEVRE+VK+AGL+V++LKRVRIGGFRLPSDLG
Sbjct: 334  VPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLG 393

Query: 378  IGKHAELTQGNLRALGWK 325
            +GKH EL Q  L+A+GWK
Sbjct: 394  LGKHVELKQSELKAMGWK 411


>ref|XP_003536335.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Glycine max]
          Length = 399

 Score =  437 bits (1123), Expect = e-120
 Identities = 229/382 (59%), Positives = 274/382 (71%), Gaps = 28/382 (7%)
 Frame = -3

Query: 1383 THLHF---RTL--ITCSLSTS-----------SKPDPVTNSATEEDGQLYIPWIV---NG 1261
            +H HF   RTL  +TCS S+S            KP P  +++ E DG L IPWIV   +G
Sbjct: 18   SHTHFSPFRTLPRLTCSFSSSIKFNISFAPPKPKPKPEPDASNEPDGPLLIPWIVRGEDG 77

Query: 1260 NSAFMNKPPPSNLLXXXXXXXXXXXXXXXKIVKARADVEVNSKMKL--------SKAARR 1105
            N    ++PPPS L                    A          K         SKAARR
Sbjct: 78   NLRLQSEPPPSLLNAIATAQTGTKKDNKQTKTTAATATNTTKPQKARSTAPPQHSKAARR 137

Query: 1104 YYNENYRDQPQ-RLAKVLACAGVASRRSCEELIFEGKVTVNGSVCNTPQTKVDPGRDVVY 928
            +YN+N ++    RL+KVLA +GVASRRSCEELIFEGKVTVNG+VCNTPQTKVDP +DV+Y
Sbjct: 138  FYNQNIKESSAARLSKVLAASGVASRRSCEELIFEGKVTVNGTVCNTPQTKVDPAKDVIY 197

Query: 927  VNGSRLPKKLPPKVYLALNKPKGYICSSGEKETKSVLSLFSDFMERWDRKNDGISKPRLF 748
            VNG+RLPK+ P KVYLALNKPKGYICSSGE E+KSV+SLF D++  W +K+ G+  PRLF
Sbjct: 198  VNGNRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDYLNSWGKKHPGVPTPRLF 257

Query: 747  TVGRLDVNTTGLIIVTNDGEFAHKLSHPSFNLSKEYIVTIDGEVNKRHLLKVSEGTIIEG 568
            TVGRLDV TTGLIIVTNDG+FA KLSHPS NLSKEYI TIDG V+KRHL+ +SEGT +EG
Sbjct: 258  TVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATIDGLVHKRHLIAISEGTTVEG 317

Query: 567  VQCTPDVVELLPKQPDISRPRLRIVVHEGRHHEVREIVKHAGLQVYTLKRVRIGGFRLPS 388
            V C PDVVELLP+QP++ R R+RIVVHEGR HEVRE+VK AGL++++LKRVRIGGFRLP 
Sbjct: 318  VLCVPDVVELLPRQPEMQRTRIRIVVHEGRKHEVRELVKRAGLEIHSLKRVRIGGFRLPP 377

Query: 387  DLGIGKHAELTQGNLRALGWKA 322
            DLG+GK+ EL + NL ALGWK+
Sbjct: 378  DLGLGKYIELNKTNLNALGWKS 399