BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00002851
         (3719 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...  1539   0.0  
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...  1477   0.0  
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...  1472   0.0  
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...  1469   0.0  
ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...  1450   0.0  

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
            vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
            product [Vitis vinifera]
          Length = 1091

 Score = 1539 bits (3985), Expect = 0.0
 Identities = 795/1095 (72%), Positives = 884/1095 (80%), Gaps = 12/1095 (1%)
 Frame = +3

Query: 126  MAYVYIPVQNSEEEVRVVLDELPRDASDVLDILKAEQAPLHLWLIIAREYFKQGKVEQFR 305
            MA VYIPVQNSEEEVRV LD+LPRDASD+LDILKAEQAPL LWLIIAREYFKQGK++QFR
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60

Query: 306  QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEDHFIMATQYYNKA 485
            QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKE+HFI+ATQYYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 486  SRIDMHEPSTWVGKGQLLLAKGDVDQAFAAFKIVLDGDRDNVPALLGQACVHFSRGRFAD 665
            SRIDMHE STWVGKGQLLLAKGDV+QAFAAFKIVLDGDRDNVPALLGQACV F+RGR++D
Sbjct: 121  SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 666  SLDLYKRALLVYPYCPAAVRLGIGLCRYRLGQFDKAKLAFQRVLQLDPDNVEALIALGIM 845
            SLDLYKRAL VYP CPAAVR+GIGLC Y+LGQF+KA+ AFQRVLQLDP+NVEAL+ALGIM
Sbjct: 181  SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240

Query: 846  DLQTNDASSIRGGMEKMQQAFEIYPYCATSLNYLANHYFFTGQHFLVEQLTETALNVTNH 1025
            DL TNDAS IR GMEKMQ+AFEIYPYCA +LNYLANH+FFTGQHFLVEQLTETAL VTNH
Sbjct: 241  DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 1026 GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKENNKPHEFILPYYGLGQVQLKLGDLRS 1205
            GPTKSHSYYNLARSYHSKGDYEKAG+YYMASVKE+NKPH+F+LPYYGLGQVQLKLGD RS
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360

Query: 1206 ALTNFEKVLEVHPENCETLKALGSIYVQLAQPEKAQEFLKKATKVDPRDPQAFLDLGELL 1385
            +L+NFEKVLEV+PENCE LKALG IYVQL Q EKAQE+L+KATK+DPRD QAFLDLGELL
Sbjct: 361  SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420

Query: 1386 ISVXXXXXXXXFKTARNLLKKRNEEVPIELLNNIGVLHFERGEFELARDAFKEALGDGIW 1565
            I+         FKTAR LLKK  EEVPIELLNNIGVL+FERGEFELA   FKEA+GDGIW
Sbjct: 421  ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480

Query: 1566 LSFLEFEASASSGELERASIIKNAQPPIDSSSLNRQYKDLQLFHQLEEQGIPVELPWNKV 1745
            LSF++ +A + +                D+ +    +KD+QLFHQLEE G  VELPWNKV
Sbjct: 481  LSFIDDKAYSYAN---------------DARTSMHHFKDMQLFHQLEEDGHFVELPWNKV 525

Query: 1746 SALFNLARLLEQFHETETAIIFYRLILFKYPDYVDSYXXXXXXXXXXXXXXXSIELVGDA 1925
            + LFNLARLLEQ + T+TA I YRLILFK+PDY+D+Y               SIELVGDA
Sbjct: 526  TVLFNLARLLEQLNNTKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDA 585

Query: 1926 LMLDEKCQNALLMLGELELKNDDWVKAKETFRSAKDATDGKDAYATLCLGNWNYFAAIRS 2105
            L +++K  N+L MLG+LELKNDDWVKAKETFRSA DATDGKD+YATL LGNWNYFAAIRS
Sbjct: 586  LKVNDKGPNSLCMLGDLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRS 645

Query: 2106 EKRNPKLEATHLEKAKELFTKVLFDHNSNLYAANGAGVILAEKGQFDISKDLFTQVQEAA 2285
            EKR PKLEATHLEKAKEL+T+VL  HN+NLYAANGAGV+LAEKG FD+SKD+FTQVQEAA
Sbjct: 646  EKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAA 705

Query: 2286 SGGVFVQMPDVWINLAHVHFAQGNFTLAVKMYQNCLRRFYYNTDSQVLLYLARTHYEAEQ 2465
            SG VFVQMPDVWINLAHV+FAQGNF LAVKMYQNCLR+FYYNTDSQVLLYLARTHYEAEQ
Sbjct: 706  SGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQ 765

Query: 2466 WQECKKALLRAIHLAPSNHTLRFDVGVALQKFSASTLQKEKRTVDEVRATVAELKNAVRL 2645
            WQ+CKK LLRAIHLAPSN+TLRFD GVA+QKFSASTLQK KRT DEVR+TVAELKNAVR+
Sbjct: 766  WQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRI 825

Query: 2646 FSLLSAASNLQFHGFDEKKIETHVQYCKHLLEAAKVHCEAAEREDQQNKQRLELARQVIL 2825
            FS LSAASNL FHGFDEKKIETHV YCKHLLEAAKVHCEAAERE+ QN+ R+ELARQV L
Sbjct: 826  FSQLSAASNLHFHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNL 885

Query: 2826 AEETRRQAXXXXXXXXXXXXXXDEMXXXXXXXXXXXXXXXXWKSS--GSKRKDRSQLEDE 2999
            AEE RR+A              DE+                WKS+   SKRK+RSQ++D+
Sbjct: 886  AEEARRKAEEQRKFQLERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDD 945

Query: 3000 ENGNSEXXXXXXXXXXXXXDKISHYDSD--NAEPXXXXXXXXXXXXXXXYTEAFNETNDV 3173
            E G SE             DK S YDS+   A+                + E+ N+ N+ 
Sbjct: 946  EGGQSE-RRRRKGGKRRKKDK-SRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQ 1003

Query: 3174 D-------QDALAAAGLEDSDAEDEAAPTSNAGRRRWGFSESDEDEPV-QKPEDQDHYME 3329
            D       QD LAAAGLEDSDAED+ A  S+  RR+  +SESDEDEP  Q+PE       
Sbjct: 1004 DDDGEDDAQDLLAAAGLEDSDAEDDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVREN 1063

Query: 3330 PQDTYEETGEGERQN 3374
              +  E  GE +  N
Sbjct: 1064 SAEVQESDGEIKDDN 1078


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1088

 Score = 1477 bits (3824), Expect = 0.0
 Identities = 764/1096 (69%), Positives = 861/1096 (78%), Gaps = 13/1096 (1%)
 Frame = +3

Query: 126  MAYVYIPVQNSEEEVRVVLDELPRDASDVLDILKAEQAPLHLWLIIAREYFKQGKVEQFR 305
            MA VYIPVQNSEEEVRV LD+LPRDASD+LDILKAEQAPL LWLIIAREYFKQGK++Q+R
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60

Query: 306  QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEDHFIMATQYYNKA 485
            QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKE+HFI+ATQYYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 486  SRIDMHEPSTWVGKGQLLLAKGDVDQAFAAFKIVLDGDRDNVPALLGQACVHFSRGRFAD 665
            SRIDMHEPSTWVGKGQLLLAKG+V+QA AAFKIVLDGD DNVPALLGQACV F+RGRF+D
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180

Query: 666  SLDLYKRALLVYPYCPAAVRLGIGLCRYRLGQFDKAKLAFQRVLQLDPDNVEALIALGIM 845
            SL+LYKR L VYP CPAAVRLGIGLCRY+LGQF+KA+ AF+RVLQLDP+NVE+LIAL IM
Sbjct: 181  SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240

Query: 846  DLQTNDASSIRGGMEKMQQAFEIYPYCATSLNYLANHYFFTGQHFLVEQLTETALNVTNH 1025
            DL+TN+A+ IR GM KMQ+AFEIYPYCA +LNYLANH+FFTGQHFLVEQLTETAL VTNH
Sbjct: 241  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 1026 GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKENNKPHEFILPYYGLGQVQLKLGDLRS 1205
            GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE NKPHEF+ PYYGLGQVQ+KLGD +S
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360

Query: 1206 ALTNFEKVLEVHPENCETLKALGSIYVQLAQPEKAQEFLKKATKVDPRDPQAFLDLGELL 1385
            AL+NFEKVLEV+P+NCETLKALG IYVQL Q +K Q+F++KATK+DPRD QAFL+LGELL
Sbjct: 361  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420

Query: 1386 ISVXXXXXXXXFKTARNLLKKRNEEVPIELLNNIGVLHFERGEFELARDAFKEALGDGIW 1565
            I          FKTA  L KK  +EVPIELLNNIGVL FERGEFELAR  FKEALGDG+W
Sbjct: 421  ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480

Query: 1566 LSFLEFEASASSGELERASIIKNAQPPIDSSSLNRQYKDLQLFHQLEEQGIPVELPWNKV 1745
            LSF+  E  +S                ID+++   Q+KD+QLFH LE  G  VE+PW+KV
Sbjct: 481  LSFINEENKSS----------------IDAATSTLQFKDMQLFHDLESNGHHVEVPWDKV 524

Query: 1746 SALFNLARLLEQFHETETAIIFYRLILFKYPDYVDSYXXXXXXXXXXXXXXXSIELVGDA 1925
            + LFNLARLLEQ +++ TA IFYRLILFKYPDY+D+Y               SIELV DA
Sbjct: 525  TVLFNLARLLEQLYDSGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDA 584

Query: 1926 LMLDEKCQNALLMLGELELKNDDWVKAKETFRSAKDATDGKDAYATLCLGNWNYFAAIRS 2105
            L ++ KC NAL MLGELELKNDDWVKAKET R+A DATDGKD+YATL LGNWNYFAA+R+
Sbjct: 585  LKVNNKCPNALSMLGELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRN 644

Query: 2106 EKRNPKLEATHLEKAKELFTKVLFDHNSNLYAANGAGVILAEKGQFDISKDLFTQVQEAA 2285
            EKRNPKLEATHLEKAKEL T+VL  H+SNLYAANGA V+LAEKG FD+SKD+FTQVQEAA
Sbjct: 645  EKRNPKLEATHLEKAKELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAA 704

Query: 2286 SGGVFVQMPDVWINLAHVHFAQGNFTLAVKMYQNCLRRFYYNTDSQVLLYLARTHYEAEQ 2465
            SG VFVQMPDVWINLAHV+FAQGNFTLAVKMYQNCLR+FY+NTDSQ+LLYLARTHYEAEQ
Sbjct: 705  SGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQ 764

Query: 2466 WQECKKALLRAIHLAPSNHTLRFDVGVALQKFSASTLQKEKRTVDEVRATVAELKNAVRL 2645
            WQ+C K LLRAIHLAPSN+TLRFD GVA+QKFSASTLQK KRT DEVRATVAEL+NAVR+
Sbjct: 765  WQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRV 824

Query: 2646 FSLLSAASNLQFHGFDEKKIETHVQYCKHLLEAAKVHCEAAEREDQQNKQRLELARQVIL 2825
            FS LSAASNL  HGFDEKKI+THV YC HLL AAKVH EAAE E+QQ +QR ELARQV L
Sbjct: 825  FSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVAL 884

Query: 2826 AEETRRQAXXXXXXXXXXXXXXDEMXXXXXXXXXXXXXXXXWKSSG-SKRKDRSQLEDEE 3002
            AEE RR+A              DE+                WKSS  SKR++RS  +DEE
Sbjct: 885  AEEARRKAEEQRKFQMERRKQEDELKRVQKQEEHFRRVKEQWKSSSHSKRRERS--DDEE 942

Query: 3003 NGNSEXXXXXXXXXXXXXDKISHYDSDNAEP--------XXXXXXXXXXXXXXXYTEAFN 3158
             G  E             DK S    D  EP                        T+  +
Sbjct: 943  GGTGE-KKRKKGGKRRKKDKHSKLRYDAEEPEDDLMDEQGMEDEEADINYREEPQTQMND 1001

Query: 3159 ETNDVDQDALAAAGLEDSDAEDE-AAPTSNAGRRRWGFSESDEDEPVQKPEDQDHYMEPQ 3335
            +  +  Q  LAAAGLEDSDA++E AAP+S+  RRR   SESD+DEP+ + +         
Sbjct: 1002 DAEENAQGLLAAAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSA 1061

Query: 3336 DTYEETGE---GERQN 3374
            D     GE   G++ N
Sbjct: 1062 DMQLSDGEIRDGDKTN 1077


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
            sativus]
          Length = 1074

 Score = 1472 bits (3812), Expect = 0.0
 Identities = 754/1068 (70%), Positives = 860/1068 (80%), Gaps = 11/1068 (1%)
 Frame = +3

Query: 126  MAYVYIPVQNSEEEVRVVLDELPRDASDVLDILKAEQAPLHLWLIIAREYFKQGKVEQFR 305
            MA VYIPVQNSEEEVRV LD+LPRDASD+LDILKAEQAPL LWLIIAREYFKQGK+EQFR
Sbjct: 1    MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60

Query: 306  QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEDHFIMATQYYNKA 485
            QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKE+HFI+ATQYYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 486  SRIDMHEPSTWVGKGQLLLAKGDVDQAFAAFKIVLDGDRDNVPALLGQACVHFSRGRFAD 665
            SRIDMHEPSTWVGKGQLLL KG+V+QAFAAFKIVLDGDRDNVPALLGQACV F+RG +++
Sbjct: 121  SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180

Query: 666  SLDLYKRALLVYPYCPAAVRLGIGLCRYRLGQFDKAKLAFQRVLQLDPDNVEALIALGIM 845
            SL+LYKRAL VYP CPAAVRLGIGLCRY+L Q+ KA+ AF+R   LDP+NVEAL+ L I+
Sbjct: 181  SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237

Query: 846  DLQTNDASSIRGGMEKMQQAFEIYPYCATSLNYLANHYFFTGQHFLVEQLTETALNVTNH 1025
            DL TN+A  IR GMEKMQ+AFEIYP+CA +LNYLANH+FFTGQHFLVEQLTETAL +TNH
Sbjct: 238  DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297

Query: 1026 GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKENNKPHEFILPYYGLGQVQLKLGDLRS 1205
            GPTKSHS+YNLARSYHSKGDYEKAG+YYMAS KE NKP EF+ PYYGLGQVQLK+GDLRS
Sbjct: 298  GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357

Query: 1206 ALTNFEKVLEVHPENCETLKALGSIYVQLAQPEKAQEFLKKATKVDPRDPQAFLDLGELL 1385
            AL+NFEKVLEV+P+NCETLK LG IYVQL Q EKAQE L+KATK+DPRD QAFLDLGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417

Query: 1386 ISVXXXXXXXXFKTARNLLKKRNEEVPIELLNNIGVLHFERGEFELARDAFKEALGDGIW 1565
            IS         FKTA  LLKK  +EVPIE+LNN+GVLHFER EFELA   FKEALGDGIW
Sbjct: 418  ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477

Query: 1566 LSFLEFEASASSGELERASIIKNAQPPIDSSSLNRQYKDLQLFHQLEEQGIPVELPWNKV 1745
            L F++ +                  P I++S+   QYKD++LF+QLE +G  + LPW KV
Sbjct: 478  LDFIDGKVRC---------------PAIEASASVLQYKDVELFYQLEREGRAIVLPWKKV 522

Query: 1746 SALFNLARLLEQFHETETAIIFYRLILFKYPDYVDSYXXXXXXXXXXXXXXXSIELVGDA 1925
            ++LFNLARLLEQ H  E + + YRLILFKYPDYVD+Y               SIELV DA
Sbjct: 523  TSLFNLARLLEQLHRIEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDA 582

Query: 1926 LMLDEKCQNALLMLGELELKNDDWVKAKETFRSAKDATDGKDAYATLCLGNWNYFAAIRS 2105
            L +++KC NAL MLGELELKNDDWV+AKETFR+A +ATDGKD+YATL LGNWNYFAA+R+
Sbjct: 583  LKVNDKCSNALSMLGELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRN 642

Query: 2106 EKRNPKLEATHLEKAKELFTKVLFDHNSNLYAANGAGVILAEKGQFDISKDLFTQVQEAA 2285
            EKRNPKLEATHLEK+KEL+T+VL  H +NLYAANGAGVILAEKGQFD+SKD+FTQVQEAA
Sbjct: 643  EKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAA 702

Query: 2286 SGGVFVQMPDVWINLAHVHFAQGNFTLAVKMYQNCLRRFYYNTDSQVLLYLARTHYEAEQ 2465
            SG +FVQMPDVWINLAHV+FAQGNF+LAVKMYQNCLR+FYYNTD Q+LLYLART+YEAEQ
Sbjct: 703  SGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQ 762

Query: 2466 WQECKKALLRAIHLAPSNHTLRFDVGVALQKFSASTLQKEKRTVDEVRATVAELKNAVRL 2645
            WQ+CKK LLRAIHLAPSN+TLRFD GVA+QKFSASTLQK KRT DEVR+TVAEL+NAVR+
Sbjct: 763  WQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRV 822

Query: 2646 FSLLSAASNLQFHGFDEKKIETHVQYCKHLLEAAKVHCEAAEREDQQNKQRLELARQVIL 2825
            FS LSAASNL FHGFDEKKI+THV YCKHLLEAA VH +AAE E+QQ +QR ELARQV L
Sbjct: 823  FSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVAL 882

Query: 2826 AEETRRQAXXXXXXXXXXXXXXDEMXXXXXXXXXXXXXXXXWKS-SGSKRKDRSQLEDEE 3002
            AE+ RR+A              DE                 WKS + +KR++RS+++D+E
Sbjct: 883  AEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWKSITPAKRRERSEIDDDE 942

Query: 3003 NGNSEXXXXXXXXXXXXXDK-ISHYDSDNAE-PXXXXXXXXXXXXXXXYTEAFNETNDV- 3173
             GNSE              K  SHY+++ A+                 Y E+ ++ ND  
Sbjct: 943  AGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMDDQELYNEDNNISYRESRSQVNDQG 1002

Query: 3174 ------DQDALAAAGLEDSDAEDEA-APTSNAGRRRWGFSESDEDEPV 3296
                  DQDALA AGLEDSDAEDEA AP+SNA RRR  +S+S+EDEP+
Sbjct: 1003 DDFEGNDQDALAEAGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPI 1050


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1086

 Score = 1469 bits (3804), Expect = 0.0
 Identities = 756/1096 (68%), Positives = 866/1096 (79%), Gaps = 13/1096 (1%)
 Frame = +3

Query: 126  MAYVYIPVQNSEEEVRVVLDELPRDASDVLDILKAEQAPLHLWLIIAREYFKQGKVEQFR 305
            MA VYIPVQNSEEEVRV LD+LPRDASD+LDILKAEQAPL LWL+IAREYFKQGK++QFR
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60

Query: 306  QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEDHFIMATQYYNKA 485
            QILEEGSSPEID+YYADVRYERIAILNALGAYYSYLGKIETKQREKE+HFI+ATQYYNKA
Sbjct: 61   QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 486  SRIDMHEPSTWVGKGQLLLAKGDVDQAFAAFKIVLDGDRDNVPALLGQACVHFSRGRFAD 665
            SRIDMHEPSTWVGKGQLLLAKG+V+QA AAFKIVLDGDRDNVPALLGQACV F+RGR++D
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 666  SLDLYKRALLVYPYCPAAVRLGIGLCRYRLGQFDKAKLAFQRVLQLDPDNVEALIALGIM 845
            SL+LYKRALLVYP CPAAVRLGIGLCRY+LGQF+KA+ AF+R   LDP+NVEAL+AL IM
Sbjct: 181  SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237

Query: 846  DLQTNDASSIRGGMEKMQQAFEIYPYCATSLNYLANHYFFTGQHFLVEQLTETALNVTNH 1025
            DL+TN+A+ IR GM KMQ+AFEIYPYCA +LNYLANH+FFTGQHFLVEQLTETAL VTNH
Sbjct: 238  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 1026 GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKENNKPHEFILPYYGLGQVQLKLGDLRS 1205
            GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE NKPHEF+ PYYGLGQVQ+KLGD +S
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357

Query: 1206 ALTNFEKVLEVHPENCETLKALGSIYVQLAQPEKAQEFLKKATKVDPRDPQAFLDLGELL 1385
            AL+NFEKVLEV+P+NCETLKALG IYVQL Q +K Q+F++KATK+DPRD QAFL+LGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417

Query: 1386 ISVXXXXXXXXFKTARNLLKKRNEEVPIELLNNIGVLHFERGEFELARDAFKEALGDGIW 1565
            I          FKTAR L KK  +EVPIELLNNIGVL FERGEFELA+  FKEALGDG+W
Sbjct: 418  ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477

Query: 1566 LSFLEFEASASSGELERASIIKNAQPPIDSSSLNRQYKDLQLFHQLEEQGIPVELPWNKV 1745
            LSF+  E  +S                ID+++   Q+KD++LFH LE  G  VE+PW+KV
Sbjct: 478  LSFINEEKKSS----------------IDAATSTLQFKDMKLFHDLESNGHHVEVPWDKV 521

Query: 1746 SALFNLARLLEQFHETETAIIFYRLILFKYPDYVDSYXXXXXXXXXXXXXXXSIELVGDA 1925
            + LFNLARLLEQ +++ TA I YRL+LFKYPDY+D+Y               SIELV DA
Sbjct: 522  TVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDA 581

Query: 1926 LMLDEKCQNALLMLGELELKNDDWVKAKETFRSAKDATDGKDAYATLCLGNWNYFAAIRS 2105
            L ++ KC NAL MLGELELKNDDWVKAKET R+A DAT+GKD+YA+L LGNWNYFAA+R+
Sbjct: 582  LKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRN 641

Query: 2106 EKRNPKLEATHLEKAKELFTKVLFDHNSNLYAANGAGVILAEKGQFDISKDLFTQVQEAA 2285
            EKRNPKLEATHLEKAKEL+T+VL  H+SNLYAANGA V+LAEKG FD+SKD+FTQVQEAA
Sbjct: 642  EKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAA 701

Query: 2286 SGGVFVQMPDVWINLAHVHFAQGNFTLAVKMYQNCLRRFYYNTDSQVLLYLARTHYEAEQ 2465
            SG VFVQMPDVWINLAHV+FAQGNFTLAVKMYQNCLR+FY+NTDSQ+LLYLARTHYEAEQ
Sbjct: 702  SGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQ 761

Query: 2466 WQECKKALLRAIHLAPSNHTLRFDVGVALQKFSASTLQKEKRTVDEVRATVAELKNAVRL 2645
            WQ+C K LLRAIHLAPSN+TLRFD GVA+QKFSASTLQK KRT DEVRATVAEL+NAVR+
Sbjct: 762  WQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRV 821

Query: 2646 FSLLSAASNLQFHGFDEKKIETHVQYCKHLLEAAKVHCEAAEREDQQNKQRLELARQVIL 2825
            FS LSAASNL  HGFDEKKI+THV YC HLL AAKVH EAAERE+QQ +QR ELARQV  
Sbjct: 822  FSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAF 881

Query: 2826 AEETRRQAXXXXXXXXXXXXXXDEMXXXXXXXXXXXXXXXXWKSSG-SKRKDRSQLEDEE 3002
            AEE RR+A              DE+                WKSS  SKR++RS  +DEE
Sbjct: 882  AEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSSHSKRRERS--DDEE 939

Query: 3003 NGNSEXXXXXXXXXXXXXDKISHYDSDNAEP--------XXXXXXXXXXXXXXXYTEAFN 3158
             G +              DK S    D  EP                        T+  +
Sbjct: 940  GGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPENDMMDEQEMEDEEADINYREEPQTQMND 999

Query: 3159 ETNDVDQDALAAAGLEDSDAEDEA-APTSNAGRRRWGFSESDEDEPV---QKPEDQDHYM 3326
            +  +  Q  LAAAGLEDSDA++EA AP+S+  RRR   SESD+DEP+   Q    +++  
Sbjct: 1000 DAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSA 1059

Query: 3327 EPQDTYEETGEGERQN 3374
            + Q +  E  +G++ N
Sbjct: 1060 DMQLSDGEIRDGDKTN 1075


>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
            gi|222833309|gb|EEE71786.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 1056

 Score = 1450 bits (3753), Expect = 0.0
 Identities = 744/1065 (69%), Positives = 847/1065 (79%), Gaps = 10/1065 (0%)
 Frame = +3

Query: 126  MAYVYIPVQNSEEEVRVVLDELPRDASDVLDILKAEQAPLHLWLIIAREYFKQGKVEQFR 305
            MA+VYIPVQNSEEEVRV LD+LPRDASD+LDILKAEQAPL LWLIIAREYFKQGK++QFR
Sbjct: 1    MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60

Query: 306  QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEDHFIMATQYYNKA 485
            QILEEGSS EIDEYYADVRYERIAILNALGAYYSYLGK+ETKQREKE++FI AT++YNKA
Sbjct: 61   QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120

Query: 486  SRIDMHEPSTWVGKGQLLLAKGDVDQAFAAFKIVLDGDRDNVPALLGQACVHFSRGRFAD 665
            SRIDMHEPSTWVGKGQLLLAKG+V+QA AAF+IVL+GDRDNV ALLGQACV +SRG + +
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180

Query: 666  SLDLYKRALLVYPYCPAAVRLGIGLCRYRLGQFDKAKLAFQRVLQLDPDNVEALIALGIM 845
            SL L+KRAL VYP CP AVRLGIG C Y+LG   KA LAFQR   LDP+NVEAL++L I+
Sbjct: 181  SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237

Query: 846  DLQTNDASSIRGGMEKMQQAFEIYPYCATSLNYLANHYFFTGQHFLVEQLTETALNVTNH 1025
            DLQTN+A++IR GMEKMQ+AFEIYPYCA +LNYLANH+FFTGQHFLVEQLTETAL VTNH
Sbjct: 238  DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 1026 GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKENNKPHEFILPYYGLGQVQLKLGDLRS 1205
            GPTKSHSYYNLARSYHSKGDYE A  YY ASVKE NKP EF+ PYYGLGQVQLKLG++++
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357

Query: 1206 ALTNFEKVLEVHPENCETLKALGSIYVQLAQPEKAQEFLKKATKVDPRDPQAFLDLGELL 1385
            AL+NFEKVLEV+P+NCETLK LG IYVQL Q EKAQEFL+KA K+DPRD QAFLDLGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417

Query: 1386 ISVXXXXXXXXFKTARNLLKKRNEEVPIELLNNIGVLHFERGEFELARDAFKEALGDGIW 1565
            IS         FKTAR+LLKK  EEVPIE+LNNI V+HFER E ELA   FKEALGDGIW
Sbjct: 418  ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477

Query: 1566 LSFLEFEASASSGELERASIIKNAQPPIDSSSLNRQYKDLQLFHQLEEQGIPVELPWNKV 1745
            L+FLE +A+                  +D++S   QYKD+Q+F +LEE+G  VEL WNKV
Sbjct: 478  LTFLEGKANTYE---------------VDATSSLLQYKDMQIFRRLEEEGHSVELSWNKV 522

Query: 1746 SALFNLARLLEQFHETETAIIFYRLILFKYPDYVDSYXXXXXXXXXXXXXXXSIELVGDA 1925
            + LFNLARLLEQ H TETA   YRLILFKYPDYVD+Y               SIELV +A
Sbjct: 523  TTLFNLARLLEQLHNTETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEA 582

Query: 1926 LMLDEKCQNALLMLGELELKNDDWVKAKETFRSAKDATDGKDAYATLCLGNWNYFAAIRS 2105
            L +++KC NAL MLG+LELKNDDWVKAKETFR+A +ATDGKD+YATL LGNWNYFAAIR+
Sbjct: 583  LTVNDKCPNALSMLGDLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRN 642

Query: 2106 EKRNPKLEATHLEKAKELFTKVLFDHNSNLYAANGAGVILAEKGQFDISKDLFTQVQEAA 2285
            EKRNPKLEATHLEKAKEL+T+VL  H +NLYAANGAGV+LAEKG FD+SKDLFTQVQEAA
Sbjct: 643  EKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAA 702

Query: 2286 SGGVFVQMPDVWINLAHVHFAQGNFTLAVKMYQNCLRRFYYNTDSQVLLYLARTHYEAEQ 2465
            SG +FVQMPDVWINLAHV+FAQGNF LAVKMYQNCL++F+YNTDSQ+LLYLARTHYEAEQ
Sbjct: 703  SGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQ 762

Query: 2466 WQECKKALLRAIHLAPSNHTLRFDVGVALQKFSASTLQKEKRTVDEVRATVAELKNAVRL 2645
            WQ+CK+ LLRAIHL PSN+TLRFD GVA+QKFSASTLQK KRTVDEVR+TV EL+NAVRL
Sbjct: 763  WQDCKRTLLRAIHLTPSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRL 822

Query: 2646 FSLLSAASNLQFHGFDEKKIETHVQYCKHLLEAAKVHCEAAEREDQQNKQRLELARQVIL 2825
            FS LSAASNL F+GFDEKKI THV+YCKHLLEAA VH EAAERE+QQN+QRL+LARQ+ L
Sbjct: 823  FSQLSAASNLYFNGFDEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMAL 882

Query: 2826 AEETRRQAXXXXXXXXXXXXXXDEMXXXXXXXXXXXXXXXXWKS--SGSKRKDRSQLEDE 2999
            AEE RR+A              DE+                WKS  S SKR+DR+ ++D 
Sbjct: 883  AEEARRKAEEQRKFQLERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDG 942

Query: 3000 ENGNSE-XXXXXXXXXXXXXDKISHYDSDNAEPXXXXXXXXXXXXXXXYTEAFNETNDVD 3176
            E G+ E                 S Y+ + A+                + E   + ND D
Sbjct: 943  EGGHGEKRRRKGGKRRKKEKSSRSRYEMEEADMMDDHDEPEDDDANVNFREPGYQMNDQD 1002

Query: 3177 -------QDALAAAGLEDSDAEDEAAPTSNAGRRRWGFSESDEDE 3290
                   QD LAAAGLEDSDA+D+AA  S+AGRR+  +SESDEDE
Sbjct: 1003 DNAEENAQDVLAAAGLEDSDADDDAAAPSSAGRRKRAWSESDEDE 1047