BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00002643
         (2341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95319.1| retrotransposon protein, putative, unclassified [...   389   e-111
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]        394   e-107
gb|AAP53789.1| retrotransposon protein, putative, unclassified [...   370   e-104
gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]     362   e-103
gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]      350   e-103

>gb|ABA95319.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 955

 Score =  389 bits (998), Expect(2) = e-111
 Identities = 193/399 (48%), Positives = 262/399 (65%)
 Frame = +3

Query: 900  TYNNVKALFHWKGLKKGVTEYIKSCHICQTSKYELRHYPGLLQPLEIPQVA*KHQTMDFI 1079
            TY  +K LF+W GLKKGV  +I++C +CQ +K E  H PGLL PLE+P +A  H +MDF+
Sbjct: 556  TYQRIKKLFYWPGLKKGVENHIRNCPVCQVTKSEHVHIPGLLNPLEVPDMAWTHISMDFV 615

Query: 1080 EGLPPSNKINAILVVVDRFTKYSHFIHLTHPFTAPSIAQLFLDNIVKLHGLPAHIVSDRD 1259
            EGLP S   + ILVVVDR TKY+HFI L+HP+T   + Q+F+DNI KLHG+P  IV+DRD
Sbjct: 616  EGLPKSKGKDVILVVVDRLTKYAHFIALSHPYTVEEVVQVFMDNIHKLHGMPIAIVTDRD 675

Query: 1260 NIFLSAFWQELFTRLGSRLHYSTSYHPQTDG*TERVNQCLETYLRCMCSQQPTSWSKWLL 1439
             +F S F+QE+F     +L +ST+YHPQTDG TERVNQCLE+YLRCM  Q+P +W  W+ 
Sbjct: 676  RVFTSTFFQEVFKSQKVQLRFSTAYHPQTDGQTERVNQCLESYLRCMTFQEPQNWCSWIA 735

Query: 1440 MAEYCYNTNYHTSMSMSLFEVLYGYKSPHLSASSYLKDVKIEAREVLQQRSQITEPIKEK 1619
            +AE+ YNT YHT++ M+ F+ LYGY  P +S  S   DV  EAR  L+++  I + +K  
Sbjct: 736  LAEWWYNTTYHTAIQMTPFKALYGYSPPQISEFSVPCDVSQEARVTLEEKETIVQKLKAS 795

Query: 1620 LAQAQNRIKKFVGKDRQDRYFQEGEWVYLKLQPYRQNYVSLRKHLKLSSKFYSRFQKEAK 1799
            +  AQ R+K +  ++R +R  + G+ VYLKLQPYRQN   +R  LKL  K+Y  F+   K
Sbjct: 796  MEDAQRRMKYYADRNRTERKLEVGDMVYLKLQPYRQNAFGIRGSLKLRGKYYGPFKVLEK 855

Query: 1800 VGKVAYKLKLPEDSKIYHVFHVHFLKSSSKERKYLVLNYHIFSLMDPLFLVFPVAILKKK 1979
            VG VAY+L+LPE++ I+ VFHV  LK         + N       D      PVA+L+++
Sbjct: 856  VGAVAYRLQLPEEAAIHPVFHVSQLKKHLGTHAVPMPNLPAVG-PDGQIKTEPVAVLQRR 914

Query: 1980 TIKRAGIYVYQVLVQWNHSSPGEAR*EDYNYIWKKFPYF 2096
             I R  + V Q L+ W++ +P EA  ED +YI K FP F
Sbjct: 915  MIPRNNVAVTQWLILWSNLTPAEATWEDASYIQKVFPNF 953



 Score = 42.0 bits (97), Expect(2) = e-111
 Identities = 22/85 (25%), Positives = 44/85 (51%)
 Frame = +2

Query: 671 WVVTIEVAGTYLKDVQL*HILAGIVIKSDSYTGCEFTEGLLRHEGWIVVGNDATFMQKII 850
           W+  +++  +Y +DVQ   +L+ I    D     +F  G+++++G I VG       ++I
Sbjct: 482 WI--LDIKRSYEEDVQAHKLLSLIGTAGDPEGEYKFEAGIMKYKGRIYVGETGEIRGQLI 539

Query: 851 ESLHDTPIGGHSGHPSNLQQCQSSF 925
           ++ H +  GGH G  +  Q+ +  F
Sbjct: 540 QAYHSSTFGGHCGIRATYQRIKKLF 564


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score =  394 bits (1013), Expect = e-107
 Identities = 201/399 (50%), Positives = 261/399 (65%)
 Frame = +3

Query: 900  TYNNVKALFHWKGLKKGVTEYIKSCHICQTSKYELRHYPGLLQPLEIPQVA*KHQTMDFI 1079
            TY+ +K+LF+W GLKK V  +I+ C ICQ +K E  H PGLL PLE+P +A  H TMDF+
Sbjct: 1187 TYHRIKSLFYWPGLKKAVEGFIRECPICQVTKAEHIHIPGLLDPLEVPDMAWAHITMDFV 1246

Query: 1080 EGLPPSNKINAILVVVDRFTKYSHFIHLTHPFTAPSIAQLFLDNIVKLHGLPAHIVSDRD 1259
            EGLP SN  + ILVVVDR TKY+HFI + HP+T   + +LF++NI +LHG+P  I++DRD
Sbjct: 1247 EGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTVEQVVELFMNNIHRLHGMPMAIITDRD 1306

Query: 1260 NIFLSAFWQELFTRLGSRLHYSTSYHPQTDG*TERVNQCLETYLRCMCSQQPTSWSKWLL 1439
             IF S  +QE+F  +  RL +STSYHPQTDG TERVNQCLE+YLR M  Q+PT W  WL 
Sbjct: 1307 RIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTERVNQCLESYLRSMTFQEPTRWHSWLA 1366

Query: 1440 MAEYCYNTNYHTSMSMSLFEVLYGYKSPHLSASSYLKDVKIEAREVLQQRSQITEPIKEK 1619
            +AE+ YNT YHTS+ M+ F+ LYGY  P ++  S   +V  EAR  ++Q+  I + +K  
Sbjct: 1367 LAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAIIQKLKYS 1426

Query: 1620 LAQAQNRIKKFVGKDRQDRYFQEGEWVYLKLQPYRQNYVSLRKHLKLSSKFYSRFQKEAK 1799
            L +AQ RIK +  ++R +R    G+ VYLKLQPYRQ    +R  LKL SKFY  F+   K
Sbjct: 1427 LTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKIMEK 1486

Query: 1800 VGKVAYKLKLPEDSKIYHVFHVHFLKSSSKERKYLVLNYHIFSLMDPLFLVFPVAILKKK 1979
            VG+VAYKL+LPE S I+ VFHV  LK     R   + N       D      PVA+LK++
Sbjct: 1487 VGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAVPMANLPSVG-PDGQIKTEPVAVLKRR 1545

Query: 1980 TIKRAGIYVYQVLVQWNHSSPGEAR*EDYNYIWKKFPYF 2096
             I R G+ V Q LV W++ SP EA  ED + I   FP F
Sbjct: 1546 MIPRGGVAVTQWLVLWHNLSPSEATWEDASMIQSMFPSF 1584


>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1611

 Score =  370 bits (950), Expect(2) = e-104
 Identities = 190/399 (47%), Positives = 255/399 (63%)
 Frame = +3

Query: 900  TYNNVKALFHWKGLKKGVTEYIKSCHICQTSKYELRHYPGLLQPLEIPQVA*KHQTMDFI 1079
            TY+ +K LF+W GLKK V  YI+ C  CQ +K E  H PGLL PLE+P +A  H TMDFI
Sbjct: 1212 TYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVPDMAWTHITMDFI 1271

Query: 1080 EGLPPSNKINAILVVVDRFTKYSHFIHLTHPFTAPSIAQLFLDNIVKLHGLPAHIVSDRD 1259
            EGLP S   + ILVVVDR TKY+HF+ L+HP+T   + Q+F+DNI KLHG+P  IV+DRD
Sbjct: 1272 EGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKLHGMPMVIVTDRD 1331

Query: 1260 NIFLSAFWQELFTRLGSRLHYSTSYHPQTDG*TERVNQCLETYLRCMCSQQPTSWSKWLL 1439
             +F S F+QE+F     +L +ST++HPQTDG TERVNQCLE+YLR M  Q+P  W  WL 
Sbjct: 1332 RVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQEPQKWFSWLA 1391

Query: 1440 MAEYCYNTNYHTSMSMSLFEVLYGYKSPHLSASSYLKDVKIEAREVLQQRSQITEPIKEK 1619
            +AE+ YNT YHTS+ M+ F+ LYGY  P ++  +   ++  EAR  L+ ++ I + +K  
Sbjct: 1392 LAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLEDKALILQKLKSS 1451

Query: 1620 LAQAQNRIKKFVGKDRQDRYFQEGEWVYLKLQPYRQNYVSLRKHLKLSSKFYSRFQKEAK 1799
            + +AQ RIK +  K R +R  + G+ VYLKLQPYRQ  + +R  LKL SK+Y  F+   K
Sbjct: 1452 IGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEK 1511

Query: 1800 VGKVAYKLKLPEDSKIYHVFHVHFLKSSSKERKYLVLNYHIFSLMDPLFLVFPVAILKKK 1979
            +G VAYKL+LP+ + I+ VFHV  LK     R   + N       D      P A+L+++
Sbjct: 1512 MGAVAYKLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIG-PDGQIKTEPAAVLQRR 1570

Query: 1980 TIKRAGIYVYQVLVQWNHSSPGEAR*EDYNYIWKKFPYF 2096
             I R    V Q L+ W + +P EA  ED +YI   FP F
Sbjct: 1571 MIPRHNEPVTQWLILWENLTPAEATWEDASYIQAAFPNF 1609



 Score = 37.0 bits (84), Expect(2) = e-104
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +2

Query: 686  EVAGTYLKDVQL*HILAGIVIKSDSYTGCEFTEGLLRHEGWIVVGNDATFMQKIIESLHD 865
            ++  +Y +D+    IL+ I    D     +   GLL+++G I VG        ++E+ H 
Sbjct: 1141 DIKRSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIYVGETTEIRMLLLEAYHA 1200

Query: 866  TPIGGHSG 889
            +  GGHSG
Sbjct: 1201 SYFGGHSG 1208


>gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1475

 Score =  362 bits (930), Expect(2) = e-103
 Identities = 181/399 (45%), Positives = 257/399 (64%)
 Frame = +3

Query: 900  TYNNVKALFHWKGLKKGVTEYIKSCHICQTSKYELRHYPGLLQPLEIPQVA*KHQTMDFI 1079
            T++ +K LF+W G++  V  +I+ C  CQ +K E  H PGLL PLEIP +A  H TMDFI
Sbjct: 1076 THHRIKMLFYWHGMRGEVERFIRECPTCQITKSEHVHIPGLLNPLEIPDMAWTHITMDFI 1135

Query: 1080 EGLPPSNKINAILVVVDRFTKYSHFIHLTHPFTAPSIAQLFLDNIVKLHGLPAHIVSDRD 1259
            EGLP S   + ILVVVDR TKY+HFI L HP+    + + F++NI KLHG+P  I++DRD
Sbjct: 1136 EGLPKSQGKDVILVVVDRLTKYAHFIALAHPYDVEQVVEAFMNNIHKLHGMPMVIITDRD 1195

Query: 1260 NIFLSAFWQELFTRLGSRLHYSTSYHPQTDG*TERVNQCLETYLRCMCSQQPTSWSKWLL 1439
             IF S+ +QE+F  +  +L +ST+YHPQ DG TERVNQCLE+YLR M  Q+P  W  WL 
Sbjct: 1196 RIFTSSLFQEIFKAMKVKLRFSTAYHPQMDGQTERVNQCLESYLRNMTFQEPHKWYSWLA 1255

Query: 1440 MAEYCYNTNYHTSMSMSLFEVLYGYKSPHLSASSYLKDVKIEAREVLQQRSQITEPIKEK 1619
            +AE+ YNT +HT++ M+ F+ +YGY  P ++  S   ++  EAR  ++++  I   +K  
Sbjct: 1256 LAEWWYNTTFHTAIQMTPFKAMYGYSPPQINEFSVPCNISEEARVTIEEKEAILNKLKNS 1315

Query: 1620 LAQAQNRIKKFVGKDRQDRYFQEGEWVYLKLQPYRQNYVSLRKHLKLSSKFYSRFQKEAK 1799
            LA AQ+R+K F  K+R +R  + G+ VYLKL+PYRQ+   +R  LKL SKFY  F+   K
Sbjct: 1316 LADAQHRMKYFADKNRTERNLEVGDMVYLKLKPYRQSAFGIRGSLKLRSKFYGPFKVLQK 1375

Query: 1800 VGKVAYKLKLPEDSKIYHVFHVHFLKSSSKERKYLVLNYHIFSLMDPLFLVFPVAILKKK 1979
            +G++AYKL+LP+D++I+ VFHV  LK    +    + N       D      P+A+L+++
Sbjct: 1376 IGQLAYKLQLPDDAQIHPVFHVSQLKKHLGKHAIPMSNLPSVG-PDGQIKTEPLAVLQRR 1434

Query: 1980 TIKRAGIYVYQVLVQWNHSSPGEAR*EDYNYIWKKFPYF 2096
             + R G+ V Q L+ W + SP EA  ED + I   FP F
Sbjct: 1435 MVPRKGVAVTQWLILWQNLSPAEATWEDASVIQAMFPSF 1473



 Score = 42.7 bits (99), Expect(2) = e-103
 Identities = 25/73 (34%), Positives = 39/73 (53%)
 Frame = +2

Query: 671  WVVTIEVAGTYLKDVQL*HILAGIVIKSDSYTGCEFTEGLLRHEGWIVVGNDATFMQKII 850
            W+V I+   +Y  DVQ   IL+ I   +D     +   GLL+++G I VG      +++I
Sbjct: 1002 WIVDIQ--RSYENDVQAHKILSLIGTAADPDREYKLEAGLLKYKGRIYVGEATDIRRQLI 1059

Query: 851  ESLHDTPIGGHSG 889
             + H +  GGHSG
Sbjct: 1060 TTYHSSSFGGHSG 1072


>gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
          Length = 2396

 Score =  350 bits (897), Expect(2) = e-103
 Identities = 183/399 (45%), Positives = 250/399 (62%), Gaps = 2/399 (0%)
 Frame = +3

Query: 900  TYNNVKALFHWKGLKKGVTEYIKSCHICQTSKYELRHYPGLLQPLEIPQVA*KHQTMDFI 1079
            TY+ VK +F+W G++  V +Y++SC +CQ SK +   YPGLLQPLE+P  A    ++DFI
Sbjct: 1143 TYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEVPPQAWHTISLDFI 1202

Query: 1080 EGLPPSNKINAILVVVDRFTKYSHFIHLTHPFTAPSIAQLFLDNIVKLHGLPAHIVSDRD 1259
            EGLP S   N ILVVVD+F+KY HF+ L HPFTA  +A++FLDN+ KLHGLP +I+SDRD
Sbjct: 1203 EGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYKLHGLPVNIISDRD 1262

Query: 1260 NIFLSAFWQELFTRLGSRLHYSTSYHPQTDG*TERVNQCLETYLRCMCSQQPTSWSKWLL 1439
             IF S+FWQ+LF   G+ L  S+SYHPQ+DG TER+NQCLET+LRC     P+ WS WL 
Sbjct: 1263 RIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETFLRCYVHTCPSRWSAWLS 1322

Query: 1440 MAEYCYNTNYHTSMSMSLFEVLYGYKSPHLSASSYLKDVKIEAREVLQQRSQITEPIKEK 1619
            +AEY YNT  H+++  + FEVLYG+   H          + E    L++R  +T+ IK  
Sbjct: 1323 VAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKERELMTKVIKLH 1382

Query: 1620 LAQAQNRIKKFVGKDRQDRYFQEGEWVYLKLQPYRQNYVSLRKHLKLSSKFYSRFQKEAK 1799
            L +AQ+R+K+   K R +R F  G+WVYLKLQPY Q+ V+ R + KLS KF+  FQ   +
Sbjct: 1383 LHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSFKFFGPFQITDR 1442

Query: 1800 VGKVAYKLKLPEDSKIYHVFHVHFLKS--SSKERKYLVLNYHIFSLMDPLFLVFPVAILK 1973
            +G VAY+L LP  S I+ +FHV  LK      +R    L   +  +        P  IL+
Sbjct: 1443 LGSVAYRLALPASSSIHPIFHVSQLKRVIGRDQRASPQLPQDVGPIQ------VPTRILQ 1496

Query: 1974 KKTIKRAGIYVYQVLVQWNHSSPGEAR*EDYNYIWKKFP 2090
            ++ I R G  + QV V W+  +   A  ED   +  +FP
Sbjct: 1497 RRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFP 1535



 Score = 55.1 bits (131), Expect(2) = e-103
 Identities = 25/80 (31%), Positives = 44/80 (55%)
 Frame = +2

Query: 686  EVAGTYLKDVQL*HILAGIVIKSDSYTGCEFTEGLLRHEGWIVVGNDATFMQKIIESLHD 865
            EV   Y KD     +LA +++ S         +G++RH+  I +G +    QK+++++HD
Sbjct: 1072 EVVEGYDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQKVLQAMHD 1131

Query: 866  TPIGGHSGHPSNLQQCQSSF 925
            T +GGHSG P+   + +  F
Sbjct: 1132 TAVGGHSGAPATYHKVKQMF 1151