BLASTX nr result

ID: Lithospermum22_contig00002403 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00002403
         (907 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36688.1|RK12_NICSY RecName: Full=50S ribosomal protein L12, ...   144   4e-32
sp|P24929.1|RK12_TOBAC RecName: Full=50S ribosomal protein L12, ...   144   4e-32
emb|CAA44226.1| ribosomal protein L12-1a [Nicotiana tabacum]          144   4e-32
gb|ABF06704.1| Joka20 [Nicotiana plumbaginifolia]                     137   5e-30
ref|XP_003537765.1| PREDICTED: 50S ribosomal protein L12, chloro...   136   8e-30

>sp|P36688.1|RK12_NICSY RecName: Full=50S ribosomal protein L12, chloroplastic; AltName:
           Full=CL12; Flags: Precursor gi|248303|gb|AAB21989.1|
           ribosomal protein L12 [Nicotiana sylvestris]
          Length = 186

 Score =  144 bits (362), Expect = 4e-32
 Identities = 80/115 (69%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
 Frame = -1

Query: 691 PIHAVEAPDKVVTLGNEISSLTLAEAQTLVEYLQDKLGVSXXXXXXXXXXXXXXXXXXXP 512
           P+ AVEAP+KVV LG+EIS+LTLA+AQ LVEYLQDKLGV+                   P
Sbjct: 51  PLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAP 110

Query: 511 -VIEEKTEFDVVIEEVPSNARIATIKAVRAITNLALKEAKDLIEGLPKKFKEGIS 350
            V+EEKTEFDVVI+EVPSNARIATIKAVRA+T+LALKEAK+LIEGLPKKFKEG+S
Sbjct: 111 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVS 165


>sp|P24929.1|RK12_TOBAC RecName: Full=50S ribosomal protein L12, chloroplastic; AltName:
           Full=CL12; Flags: Precursor gi|20018|emb|CAA44214.1|
           ribosomal protein L12-1 [Nicotiana tabacum]
          Length = 186

 Score =  144 bits (362), Expect = 4e-32
 Identities = 80/115 (69%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
 Frame = -1

Query: 691 PIHAVEAPDKVVTLGNEISSLTLAEAQTLVEYLQDKLGVSXXXXXXXXXXXXXXXXXXXP 512
           P+ AVEAP+KVV LG+EIS+LTLA+AQ LVEYLQDKLGV+                   P
Sbjct: 51  PLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAP 110

Query: 511 -VIEEKTEFDVVIEEVPSNARIATIKAVRAITNLALKEAKDLIEGLPKKFKEGIS 350
            V+EEKTEFDVVI+EVPSNARIATIKAVRA+T+LALKEAK+LIEGLPKKFKEG+S
Sbjct: 111 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVS 165


>emb|CAA44226.1| ribosomal protein L12-1a [Nicotiana tabacum]
          Length = 191

 Score =  144 bits (362), Expect = 4e-32
 Identities = 80/115 (69%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
 Frame = -1

Query: 691 PIHAVEAPDKVVTLGNEISSLTLAEAQTLVEYLQDKLGVSXXXXXXXXXXXXXXXXXXXP 512
           P+ AVEAP+KVV LG+EIS+LTLA+AQ LVEYLQDKLGV+                   P
Sbjct: 51  PLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAP 110

Query: 511 -VIEEKTEFDVVIEEVPSNARIATIKAVRAITNLALKEAKDLIEGLPKKFKEGIS 350
            V+EEKTEFDVVI+EVPSNARIATIKAVRA+T+LALKEAK+LIEGLPKKFKEG+S
Sbjct: 111 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVS 165


>gb|ABF06704.1| Joka20 [Nicotiana plumbaginifolia]
          Length = 161

 Score =  137 bits (344), Expect = 5e-30
 Identities = 77/111 (69%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
 Frame = -1

Query: 691 PIHAVEAPDKVVTLGNEISSLTLAEAQTLVEYLQDKLGVSXXXXXXXXXXXXXXXXXXXP 512
           P+ AVEAP+KVV LG+EIS+LTLA+AQ LVEYLQDKLGV+                   P
Sbjct: 51  PLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAP 110

Query: 511 -VIEEKTEFDVVIEEVPSNARIATIKAVRAITNLALKEAKDLIEGLPKKFK 362
            V+EEKTEFDVVI+EVPSNARIATIKAVRA+T+LALKEAK+LIEGLPKKFK
Sbjct: 111 GVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFK 161


>ref|XP_003537765.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Glycine
           max]
          Length = 188

 Score =  136 bits (342), Expect = 8e-30
 Identities = 75/115 (65%), Positives = 86/115 (74%), Gaps = 2/115 (1%)
 Frame = -1

Query: 688 IHAVEAPDKVVTLGNEISSLTLAEAQTLVEYLQDKLGVSXXXXXXXXXXXXXXXXXXXP- 512
           + AVEAP+K+  LG+EI+ LTL EA+ LV++LQDKLGVS                     
Sbjct: 53  VSAVEAPEKITKLGDEIAGLTLEEAKNLVDFLQDKLGVSAAAFAPVAVAAGAGGAVADAP 112

Query: 511 -VIEEKTEFDVVIEEVPSNARIATIKAVRAITNLALKEAKDLIEGLPKKFKEGIS 350
            V+EEKTEFDVVIEEVPSNARIA IKAVRA+TNLALKEAK+LIEGLPKKFKEGIS
Sbjct: 113 AVVEEKTEFDVVIEEVPSNARIAVIKAVRALTNLALKEAKELIEGLPKKFKEGIS 167


Top