BLASTX nr result
ID: Lithospermum22_contig00002367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00002367
(1549 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004146391.1| PREDICTED: chloroplast stem-loop binding pro... 676 0.0
dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila] 664 0.0
ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabido... 657 0.0
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7... 655 0.0
emb|CAA71589.1| g5bf [Arabidopsis thaliana] 654 0.0
>ref|XP_004146391.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa b,
chloroplastic-like [Cucumis sativus]
gi|449480815|ref|XP_004156003.1| PREDICTED: chloroplast
stem-loop binding protein of 41 kDa b, chloroplastic-like
[Cucumis sativus]
Length = 383
Score = 676 bits (1743), Expect = 0.0
Identities = 329/381 (86%), Positives = 356/381 (93%), Gaps = 1/381 (0%)
Frame = -3
Query: 1370 IMAN-LVAVQPKQASFSALPSCFSDFNGARLVSSLQYKRKVYQPKGALHVTASSSKKVLI 1194
IMAN + A K SFS LPS SDFNGARL + +QYKRKV QPKG LHVTAS+ K +LI
Sbjct: 3 IMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNILI 62
Query: 1193 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPDESDKDYADFKSQILHLKGDRKD 1014
MGGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+TQQLP ES+ DYADFKS+ILHLKGDRKD
Sbjct: 63 MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKD 122
Query: 1013 YDFVKSALSAEGFDVVYDINGREAEEVEPIIDALPNLEQYIYCSSAGVYLKTDCPPHFEV 834
+DFVKS+LSA GFDVVYDINGREA+EVEPIIDALP LEQ+IYCSSAGVYLK+D PHFEV
Sbjct: 123 FDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEV 182
Query: 833 DAVDPKSRHKGKLDTENLLVARDVNFTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 654
DAVDPKSRHKGKL+TE+LL ++DVN+TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP
Sbjct: 183 DAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 242
Query: 653 NSGIQITQLGHVKDLATAFIQVLGNEKASKEVFNISGEKYVTFDGLAKACAKAGGFPEPE 474
NSGIQITQLGHVKDLA AF+QVLGN+KAS++VFNISGEKYV+FDGLAKACAKAGGFPEPE
Sbjct: 243 NSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPE 302
Query: 473 IVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSLLGWKPEFDLVEGLTDSYNLDFGRGTF 294
IVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKS+LGWKPEFDLVEGL DSYNLDFGRGTF
Sbjct: 303 IVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTF 362
Query: 293 RKEADFSTDDIILGKSLVLQS 231
RKEADFSTDDIILGKSLVLQ+
Sbjct: 363 RKEADFSTDDIILGKSLVLQA 383
>dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]
Length = 379
Score = 664 bits (1713), Expect = 0.0
Identities = 322/379 (84%), Positives = 352/379 (92%)
Frame = -3
Query: 1367 MANLVAVQPKQASFSALPSCFSDFNGARLVSSLQYKRKVYQPKGALHVTASSSKKVLIMG 1188
MA ++ +Q Q SFS L S SDFNGA+L +QYKRKVYQPKGAL+V+ASS KK+LIMG
Sbjct: 1 MAKIMMLQQSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVYQPKGALYVSASSEKKILIMG 60
Query: 1187 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPDESDKDYADFKSQILHLKGDRKDYD 1008
GTRFIGVFLSRLLVKEGHQVTLFTRGK+PI +QLP ESD+D+ADF S+ILHLKGDRKDYD
Sbjct: 61 GTRFIGVFLSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 1007 FVKSALSAEGFDVVYDINGREAEEVEPIIDALPNLEQYIYCSSAGVYLKTDCPPHFEVDA 828
FVKS+LSAEGFDVVYDINGREAEEVEPIIDALP LEQYIYCSSAGVYLK+D PH EVDA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVDA 180
Query: 827 VDPKSRHKGKLDTENLLVARDVNFTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNS 648
VDPKSRHKGKL+TE+LL ++ VN+TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNS
Sbjct: 181 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 240
Query: 647 GIQITQLGHVKDLATAFIQVLGNEKASKEVFNISGEKYVTFDGLAKACAKAGGFPEPEIV 468
GIQI+QLGHVKDLATAF+ VLGNEKAS+E+FNISGEKY+TFDGLA+ACAKAGGFPEPEIV
Sbjct: 241 GIQISQLGHVKDLATAFLAVLGNEKASREIFNISGEKYITFDGLARACAKAGGFPEPEIV 300
Query: 467 HYNPKEFDFGKKKPFPFRDQHFFASVEKAKSLLGWKPEFDLVEGLTDSYNLDFGRGTFRK 288
HYNPKEFDFGKKK FPFRDQHFFASVEKAK +LGWKPEFDLVEGLTDSYNLDFGRGTFRK
Sbjct: 301 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 360
Query: 287 EADFSTDDIILGKSLVLQS 231
EADF+TDD+IL K LVLQS
Sbjct: 361 EADFTTDDMILSKKLVLQS 379
>ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp.
lyrata] gi|297335585|gb|EFH66002.1| catalytic/ coenzyme
binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 378
Score = 657 bits (1696), Expect = 0.0
Identities = 319/378 (84%), Positives = 348/378 (92%)
Frame = -3
Query: 1367 MANLVAVQPKQASFSALPSCFSDFNGARLVSSLQYKRKVYQPKGALHVTASSSKKVLIMG 1188
MA ++ +Q Q SFS L S SDFNGA+L +QYKRKV+QPKGALHV+ASS KK+LIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALHVSASSEKKILIMG 60
Query: 1187 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPDESDKDYADFKSQILHLKGDRKDYD 1008
GTRFIGVFLSRLLVK GHQVTLFTRGK+PI +QLP ESD+D+ADF S+ILHLKGDRKDYD
Sbjct: 61 GTRFIGVFLSRLLVKGGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 1007 FVKSALSAEGFDVVYDINGREAEEVEPIIDALPNLEQYIYCSSAGVYLKTDCPPHFEVDA 828
FVKS+LSAEGFDVVYDINGREAEEVEPIIDALP LEQYIYCSSAGVYLK+D PH E DA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEEDA 180
Query: 827 VDPKSRHKGKLDTENLLVARDVNFTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNS 648
VDPKSRHKGKL+TE+LL ++ VN+TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNS
Sbjct: 181 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 240
Query: 647 GIQITQLGHVKDLATAFIQVLGNEKASKEVFNISGEKYVTFDGLAKACAKAGGFPEPEIV 468
GIQI+QLGHVKDL TAF+ VLGNEKAS+E+FNISGEKYVTFDGLAKACAKAGGFPEPEIV
Sbjct: 241 GIQISQLGHVKDLGTAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 300
Query: 467 HYNPKEFDFGKKKPFPFRDQHFFASVEKAKSLLGWKPEFDLVEGLTDSYNLDFGRGTFRK 288
HYNPKEFDFGKKK FPFRDQHFFASVEKAK +LGWKPEFDLVEGLTDSYNLDFGRGTFRK
Sbjct: 301 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 360
Query: 287 EADFSTDDIILGKSLVLQ 234
EADF+TDD++L K LVLQ
Sbjct: 361 EADFTTDDMVLSKKLVLQ 378
>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
Full=Chloroplast stem-loop binding protein of 41 kDa b,
chloroplastic; Short=CSP41-b; AltName:
Full=Heteroglycan-interacting protein 1.3; AltName:
Full=Protein CHLOROPLAST RNA BINDING; AltName:
Full=Protein Gb5f; Flags: Precursor
gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
[Arabidopsis thaliana]
gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
[Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
Identical to gb|Y10557 g5bf gene from Arabidopsis
thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
gb|T22425, gb|N64934 and gb|T46767 come from this gene
[Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|17979099|gb|AAL47493.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
binding protein [Arabidopsis thaliana]
Length = 378
Score = 655 bits (1691), Expect = 0.0
Identities = 317/378 (83%), Positives = 350/378 (92%)
Frame = -3
Query: 1367 MANLVAVQPKQASFSALPSCFSDFNGARLVSSLQYKRKVYQPKGALHVTASSSKKVLIMG 1188
MA ++ +Q Q SFS L S SDFNGA+L +QYKRKV+QPKGAL+V+ASS KK+LIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 1187 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPDESDKDYADFKSQILHLKGDRKDYD 1008
GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLP ESD+D+ADF S+ILHLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 1007 FVKSALSAEGFDVVYDINGREAEEVEPIIDALPNLEQYIYCSSAGVYLKTDCPPHFEVDA 828
FVKS+LSAEGFDVVYDINGREAEEVEPI++ALP LEQYIYCSSAGVYLK+D PH E DA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDA 180
Query: 827 VDPKSRHKGKLDTENLLVARDVNFTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNS 648
VDPKSRHKGKL+TE+LL ++ VN+TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNS
Sbjct: 181 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 240
Query: 647 GIQITQLGHVKDLATAFIQVLGNEKASKEVFNISGEKYVTFDGLAKACAKAGGFPEPEIV 468
GIQI+QLGHVKDLATAF+ VLGNEKAS+E+FNISGEKYVTFDGLAKACAKAGGFPEPEIV
Sbjct: 241 GIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 300
Query: 467 HYNPKEFDFGKKKPFPFRDQHFFASVEKAKSLLGWKPEFDLVEGLTDSYNLDFGRGTFRK 288
HYNPKEFDFGKKK FPFRDQHFFASVEKAK +LGWKPEFDLVEGLTDSYNLDFGRGTFRK
Sbjct: 301 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 360
Query: 287 EADFSTDDIILGKSLVLQ 234
EADF+TDD+IL K LVLQ
Sbjct: 361 EADFTTDDMILSKKLVLQ 378
>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
Length = 378
Score = 654 bits (1688), Expect = 0.0
Identities = 317/378 (83%), Positives = 349/378 (92%)
Frame = -3
Query: 1367 MANLVAVQPKQASFSALPSCFSDFNGARLVSSLQYKRKVYQPKGALHVTASSSKKVLIMG 1188
MA ++ +Q Q SFS L S SDFNGA+L +QYKRKV+QPKGAL+V+ASS KK+LIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 1187 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPDESDKDYADFKSQILHLKGDRKDYD 1008
GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLP ESD+D+ADF S+ILHLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 1007 FVKSALSAEGFDVVYDINGREAEEVEPIIDALPNLEQYIYCSSAGVYLKTDCPPHFEVDA 828
FVKS+LSAEGFDVVYDINGREAEEVEPI++ALP LEQYIYCSSAGVYLK D PH E DA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKFDILPHCEEDA 180
Query: 827 VDPKSRHKGKLDTENLLVARDVNFTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNS 648
VDPKSRHKGKL+TE+LL ++ VN+TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNS
Sbjct: 181 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 240
Query: 647 GIQITQLGHVKDLATAFIQVLGNEKASKEVFNISGEKYVTFDGLAKACAKAGGFPEPEIV 468
GIQI+QLGHVKDLATAF+ VLGNEKAS+E+FNISGEKYVTFDGLAKACAKAGGFPEPEIV
Sbjct: 241 GIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 300
Query: 467 HYNPKEFDFGKKKPFPFRDQHFFASVEKAKSLLGWKPEFDLVEGLTDSYNLDFGRGTFRK 288
HYNPKEFDFGKKK FPFRDQHFFASVEKAK +LGWKPEFDLVEGLTDSYNLDFGRGTFRK
Sbjct: 301 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 360
Query: 287 EADFSTDDIILGKSLVLQ 234
EADF+TDD+IL K LVLQ
Sbjct: 361 EADFTTDDMILSKKLVLQ 378