BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00002271
         (1274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 is...   488   e-159
emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]   486   e-158
ref|XP_002520330.1| replication factor C / DNA polymerase III ga...   481   e-156
ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|2...   477   e-155
ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [V...   468   e-153

>ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera]
            gi|302141781|emb|CBI18984.3| unnamed protein product
            [Vitis vinifera]
          Length = 341

 Score =  488 bits (1256), Expect(2) = e-159
 Identities = 247/287 (86%), Positives = 270/287 (94%), Gaps = 1/287 (0%)
 Frame = +1

Query: 223  TTTALAIAHQLFGPQLYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSS-RQGGYPCPP 399
            TTTALAIAHQLFGP+LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGS  RQGGYPCPP
Sbjct: 56   TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP 115

Query: 400  FKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLN 579
            +KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+
Sbjct: 116  YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 175

Query: 580  EDVMSSRILHICNEEGINLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSITSRDLIN 759
            E++MSSRILHIC EE +NLDSEALSTLSSISQGDLRRAITYLQ AARLFGS I+S+DLI+
Sbjct: 176  EEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLIS 235

Query: 760  VSGVIPEEAIQSLFSACKSGHFDLADSEVNNVIAEGYPVSQMLSQLYDVIVQAVDVSDEQ 939
            VSGV+P+  +Q+LF+ACKSG FD A+ EVNNVIAEGYPVSQML QL+DV+V+A D+SDEQ
Sbjct: 236  VSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQ 294

Query: 940  KARICKKLGESDKCLVDGADEYLQLLDVASNMMQALCNMPEEFSYGS 1080
            KARICK+L E+DKCLVDGADEYLQLLDVASN M+ALCNMPEEF + S
Sbjct: 295  KARICKRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES 341



 Score =  100 bits (250), Expect(2) = e-159
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = +3

Query: 3   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLQTANCPHMLFYGPPGTG 140
           QPWVEKYRPKQVKDVAHQDEVVRVLTNTL+T NCPHMLFYGPPGTG
Sbjct: 9   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTG 54


>emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
          Length = 341

 Score =  486 bits (1251), Expect(2) = e-158
 Identities = 246/287 (85%), Positives = 269/287 (93%), Gaps = 1/287 (0%)
 Frame = +1

Query: 223  TTTALAIAHQLFGPQLYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSS-RQGGYPCPP 399
            TTTALAIAHQLFGP+LYKSRVLELNASDDRGINVVRTKIKDFA VAVGS  RQGGYPCPP
Sbjct: 56   TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPP 115

Query: 400  FKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLN 579
            +KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+
Sbjct: 116  YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 175

Query: 580  EDVMSSRILHICNEEGINLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSITSRDLIN 759
            E++MSSRILHIC EE +NLDSEALSTLSSISQGDLRRAITYLQ AARLFGS I+S+DLI+
Sbjct: 176  EEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLIS 235

Query: 760  VSGVIPEEAIQSLFSACKSGHFDLADSEVNNVIAEGYPVSQMLSQLYDVIVQAVDVSDEQ 939
            VSGV+P+  +Q+LF+ACKSG FD A+ EVNNVIAEGYPVSQML QL+DV+V+A D+SDEQ
Sbjct: 236  VSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQ 294

Query: 940  KARICKKLGESDKCLVDGADEYLQLLDVASNMMQALCNMPEEFSYGS 1080
            KARICK+L E+DKCLVDGADEYLQLLDVASN M+ALCNMPEEF + S
Sbjct: 295  KARICKRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES 341



 Score =  100 bits (250), Expect(2) = e-158
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = +3

Query: 3   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLQTANCPHMLFYGPPGTG 140
           QPWVEKYRPKQVKDVAHQDEVVRVLTNTL+T NCPHMLFYGPPGTG
Sbjct: 9   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTG 54


>ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540549|gb|EEF42116.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 342

 Score =  481 bits (1237), Expect(2) = e-156
 Identities = 237/287 (82%), Positives = 270/287 (94%), Gaps = 1/287 (0%)
 Frame = +1

Query: 223  TTTALAIAHQLFGPQLYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSS-RQGGYPCPP 399
            TTTALAIAHQLFGP+LYKSRVLELNASDDRGINVVRTKIK+FAAVAVGS  R GGYPCPP
Sbjct: 56   TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPP 115

Query: 400  FKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLN 579
            +KIIILDEADSMTEDAQNALRRTMETYSKVTRFFF+CNYISRIIEPLASRCAKFRFKPL+
Sbjct: 116  YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLS 175

Query: 580  EDVMSSRILHICNEEGINLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSITSRDLIN 759
            E++MSSR+LHIC EEG+NLD+EALSTLS +SQGDLRRAITYLQ AARL+GS+I+S+DLI+
Sbjct: 176  EEIMSSRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLIS 235

Query: 760  VSGVIPEEAIQSLFSACKSGHFDLADSEVNNVIAEGYPVSQMLSQLYDVIVQAVDVSDEQ 939
            VSGVIP+EA+ +L++AC+SG FD+A+ EVNN+IAEGYPVSQML QL +V+V+A D+SDEQ
Sbjct: 236  VSGVIPQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQ 295

Query: 940  KARICKKLGESDKCLVDGADEYLQLLDVASNMMQALCNMPEEFSYGS 1080
            KA+ICK LG +DKCLVDGADEYLQLLDVASN M+ALCNMP+EF Y S
Sbjct: 296  KAQICKSLGAADKCLVDGADEYLQLLDVASNTMRALCNMPQEFPYES 342



 Score = 99.8 bits (247), Expect(2) = e-156
 Identities = 43/46 (93%), Positives = 46/46 (100%)
 Frame = +3

Query: 3   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLQTANCPHMLFYGPPGTG 140
           QPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+T+NCPHMLFYGPPGTG
Sbjct: 9   QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTG 54


>ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1|
            predicted protein [Populus trichocarpa]
          Length = 342

 Score =  477 bits (1228), Expect(2) = e-155
 Identities = 236/285 (82%), Positives = 266/285 (93%), Gaps = 1/285 (0%)
 Frame = +1

Query: 223  TTTALAIAHQLFGPQLYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSS-RQGGYPCPP 399
            TTTALAIAHQL+GP+LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGS  RQG YPCPP
Sbjct: 56   TTTALAIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPP 115

Query: 400  FKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLN 579
            +KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 
Sbjct: 116  YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLP 175

Query: 580  EDVMSSRILHICNEEGINLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSITSRDLIN 759
            E++MS+RILHICNEEG+ LD+EALSTLSS+SQGDLRRAITYLQ AARLFGSSI+S+DLI+
Sbjct: 176  EEIMSNRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLIS 235

Query: 760  VSGVIPEEAIQSLFSACKSGHFDLADSEVNNVIAEGYPVSQMLSQLYDVIVQAVDVSDEQ 939
            VSG IP E  +++++ACK+G FDLA+ EVN+VIAEGYPVSQML+QL++V+V+  D+SDEQ
Sbjct: 236  VSGAIPREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQ 295

Query: 940  KARICKKLGESDKCLVDGADEYLQLLDVASNMMQALCNMPEEFSY 1074
            KARICK L  +DKCLVDGADEYLQLLDV SN M++LCNMP+EFSY
Sbjct: 296  KARICKSLATADKCLVDGADEYLQLLDVVSNTMRSLCNMPQEFSY 340



 Score = 99.0 bits (245), Expect(2) = e-155
 Identities = 43/46 (93%), Positives = 45/46 (97%)
 Frame = +3

Query: 3   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLQTANCPHMLFYGPPGTG 140
           Q WVEKYRPKQ+KDVAHQDEVVRVLTNTL+TANCPHMLFYGPPGTG
Sbjct: 9   QQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTG 54


>ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
          Length = 334

 Score =  468 bits (1204), Expect(2) = e-153
 Identities = 241/287 (83%), Positives = 263/287 (91%), Gaps = 1/287 (0%)
 Frame = +1

Query: 223  TTTALAIAHQLFGPQLYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSS-RQGGYPCPP 399
            TTTALAIAHQLFG       VLELNASDDRGINVVRTKIKDFAAVAVGS  RQGGYPCPP
Sbjct: 56   TTTALAIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP 108

Query: 400  FKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLN 579
            +KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+
Sbjct: 109  YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 168

Query: 580  EDVMSSRILHICNEEGINLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSITSRDLIN 759
            E++MSSRILHIC EE +NLDSEALSTLSSISQGDLRRAITYLQ AARLFGS I+S+DLI+
Sbjct: 169  EEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLIS 228

Query: 760  VSGVIPEEAIQSLFSACKSGHFDLADSEVNNVIAEGYPVSQMLSQLYDVIVQAVDVSDEQ 939
            VSGV+P+  +Q+LF+ACKSG FD A+ EVNNVIAEGYPVSQML QL+DV+V+A D+SDEQ
Sbjct: 229  VSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQ 287

Query: 940  KARICKKLGESDKCLVDGADEYLQLLDVASNMMQALCNMPEEFSYGS 1080
            KARICK+L E+DKCLVDGADEYLQLLDVASN M+ALCNMPEEF + S
Sbjct: 288  KARICKRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES 334



 Score =  100 bits (250), Expect(2) = e-153
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = +3

Query: 3   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLQTANCPHMLFYGPPGTG 140
           QPWVEKYRPKQVKDVAHQDEVVRVLTNTL+T NCPHMLFYGPPGTG
Sbjct: 9   QPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTG 54