BLASTX nr result
ID: Lithospermum22_contig00001510
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00001510
(2327 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation spec... 1211 0.0
emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera] 1206 0.0
ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation spec... 1190 0.0
ref|XP_002323824.1| predicted protein [Populus trichocarpa] gi|2... 1183 0.0
ref|NP_176297.1| cleavage and polyadenylation specificity factor... 1165 0.0
>ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 1211 bits (3133), Expect = 0.0
Identities = 598/695 (86%), Positives = 645/695 (92%)
Frame = -2
Query: 2320 MASIGQPASSLKRRDSMTIREGDELTITPLGAGSEVGRSCVHMTYKGKTVLFDCGIHPAY 2141
MAS G P SLKR DS REGD+L ITPLGAG+EVGRSCV+M+YKGKT+LFDCGIHPAY
Sbjct: 1 MASTGPP-QSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
Query: 2140 SGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLL 1961
SGMAALPYFDEIDPSTIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLL
Sbjct: 60 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL 119
Query: 1960 SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV 1781
SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV
Sbjct: 120 SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV 179
Query: 1780 DVAGVRVLYTGDYSREEDRHLRAAELPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVIH 1601
D+AGVRVLYTGDYSREEDRHLRAAE+PQFSPD+CIIESTYGVQLHQPRH+REKRFTDVIH
Sbjct: 180 DIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIH 239
Query: 1600 STIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCLAVYQTYIN 1421
STI+QGGRVLIPAFALGRAQELLLILDEYWSNHPELHN+PIYYASPLAKRC+AVYQTYIN
Sbjct: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYIN 299
Query: 1420 SMNDRIRNQFANSNPFDFKHISPLKSIENFEDVGPSVVMASPGGLQSGLSRQLFDRWCSD 1241
SMN+RIRNQFANSNPFDFKHISPLKSIENF DVGPSVVMASP GLQSGLSRQLFD WCSD
Sbjct: 300 SMNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSD 359
Query: 1240 KKNACVIPGYVVEGTLAKTIISEPKEITQMGGLTVALNMQVHYISFSAHADYAQTSTFLQ 1061
KKNACVIPGYVVEGTLAKTII+EPKE+T M GLT LNMQVHYISFSAHAD+AQTSTFL+
Sbjct: 360 KKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLK 419
Query: 1060 ELMPPNIILVHGESHEMERLRQKLTTVFTDGNTKIMTPKNCQSVEMHFNSQKMAKAIGKL 881
ELMPPNIILVHGE++EM RL+QKL T F D NTKI++PKNCQSVEM+FNS+KMAK IG+L
Sbjct: 420 ELMPPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRL 479
Query: 880 AEKTPEAGETVSGLLVKKGFTYQFMAPEDLHVFSQLSTANVIQRITIPYSGAFAIIKHRL 701
AEKTP GETVSGLLVKKGFTYQ MAP+DLHVFSQLSTANV QRITIPY+GAF +IKHRL
Sbjct: 480 AEKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRL 539
Query: 700 KQIYESVEPSTDEESGVPILRVHDRVTVKQESEKHLSLHWSADPISDMVSDSIVALVLNA 521
KQIYESVE DEES VP RVH+RVTVK ESEKH+SLHW++DPISDMVSDSIVALVLN
Sbjct: 540 KQIYESVESLPDEESEVPAFRVHERVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNI 599
Query: 520 SRELPKVVVELEPSLNEDESVKKTEKIMRALLVSLFGDVKYAEDGKLVINVDGNVAQLDK 341
SRE+PKVVVE E E+E+ KK EK++ ALLVSLFGDVK E+G LVI+VDGNVA LDK
Sbjct: 600 SREIPKVVVESEAIKTEEENGKKAEKVIHALLVSLFGDVKLGENGNLVISVDGNVAHLDK 659
Query: 340 QTGEVESENEGLKERVRTAFRRIKSALKPIPLSAA 236
Q+G VESENEGLKERVR AF+RI++A+KPIPLS +
Sbjct: 660 QSGNVESENEGLKERVRVAFQRIQNAVKPIPLSVS 694
>emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 1206 bits (3121), Expect = 0.0
Identities = 593/686 (86%), Positives = 640/686 (93%)
Frame = -2
Query: 2293 SLKRRDSMTIREGDELTITPLGAGSEVGRSCVHMTYKGKTVLFDCGIHPAYSGMAALPYF 2114
SLKR DS REGD+L ITPLGAG+EVGRSCV+M+YKGKT+LFDCGIHPAYSGMAALPYF
Sbjct: 2 SLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 61
Query: 2113 DEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDYVKVSKV 1934
DEIDPSTIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLLSDYVKVSKV
Sbjct: 62 DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKV 121
Query: 1933 SVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDVAGVRVLY 1754
SVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD+AGVRVLY
Sbjct: 122 SVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLY 181
Query: 1753 TGDYSREEDRHLRAAELPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVIHSTIAQGGRV 1574
TGDYSREEDRHLRAAE+PQFSPD+CIIESTYGVQLHQPRH+REKRFTDVIHSTI+QGGRV
Sbjct: 182 TGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGRV 241
Query: 1573 LIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCLAVYQTYINSMNDRIRNQ 1394
LIPAFALGRAQELLLILDEYWSNHPELHN+PIYYASPLAKRC+AVYQTYINSMN+RIRNQ
Sbjct: 242 LIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMNERIRNQ 301
Query: 1393 FANSNPFDFKHISPLKSIENFEDVGPSVVMASPGGLQSGLSRQLFDRWCSDKKNACVIPG 1214
FANSNPFDFKHISPLKSIENF DVGPSVVMASP GLQSGLSRQLFD WCSDKKNACVIPG
Sbjct: 302 FANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKNACVIPG 361
Query: 1213 YVVEGTLAKTIISEPKEITQMGGLTVALNMQVHYISFSAHADYAQTSTFLQELMPPNIIL 1034
YVVEGTLAKTII+EPKE+T M GLT LNMQVHYISFSAHAD+AQTSTFL+ELMPPNIIL
Sbjct: 362 YVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKELMPPNIIL 421
Query: 1033 VHGESHEMERLRQKLTTVFTDGNTKIMTPKNCQSVEMHFNSQKMAKAIGKLAEKTPEAGE 854
VHGE++EM RL+QKL T F D NTKI++PKNCQSVEM+FNS+KMAK IG+LAEKTP GE
Sbjct: 422 VHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLAEKTPGVGE 481
Query: 853 TVSGLLVKKGFTYQFMAPEDLHVFSQLSTANVIQRITIPYSGAFAIIKHRLKQIYESVEP 674
TVSGLLVKKGFTYQ MAP+DLHVFSQLSTANV QRITIPY+GAF +IKHRLKQIYESVE
Sbjct: 482 TVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLKQIYESVES 541
Query: 673 STDEESGVPILRVHDRVTVKQESEKHLSLHWSADPISDMVSDSIVALVLNASRELPKVVV 494
DEES VP RVH+RVTVK ESEKH+SLHW++DPISDMVSDSIVALVLN SRE+PKVVV
Sbjct: 542 LPDEESEVPAFRVHERVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNISREIPKVVV 601
Query: 493 ELEPSLNEDESVKKTEKIMRALLVSLFGDVKYAEDGKLVINVDGNVAQLDKQTGEVESEN 314
E E E+E+ KK EK++ ALLVSLFGDVK E+G LVI+VDGNVA LDKQ+G VESEN
Sbjct: 602 ESEAIKTEEENGKKAEKVIHALLVSLFGDVKLGENGNLVISVDGNVAHLDKQSGNVESEN 661
Query: 313 EGLKERVRTAFRRIKSALKPIPLSAA 236
EGLKERVR AF+RI++A+KPIPLS +
Sbjct: 662 EGLKERVRVAFQRIQNAVKPIPLSVS 687
>ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 1190 bits (3079), Expect = 0.0
Identities = 590/695 (84%), Positives = 640/695 (92%)
Frame = -2
Query: 2320 MASIGQPASSLKRRDSMTIREGDELTITPLGAGSEVGRSCVHMTYKGKTVLFDCGIHPAY 2141
MAS G P+ SLKR DS R GD+L ITPLGAG+EVGRSCV+M+YKGKT+LFDCGIHPAY
Sbjct: 1 MASTG-PSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 58
Query: 2140 SGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLL 1961
SGMAALPYFDEIDPSTIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLL
Sbjct: 59 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL 118
Query: 1960 SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV 1781
SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV
Sbjct: 119 SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV 178
Query: 1780 DVAGVRVLYTGDYSREEDRHLRAAELPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVIH 1601
D+AGVRVLYTGDYSREEDRHLRAAE+PQF PD+CIIESTYGVQLHQPRH+REKRFTDVIH
Sbjct: 179 DIAGVRVLYTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIH 238
Query: 1600 STIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCLAVYQTYIN 1421
STI+QGGRVLIPA+ALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRC+AVYQTYIN
Sbjct: 239 STISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYIN 298
Query: 1420 SMNDRIRNQFANSNPFDFKHISPLKSIENFEDVGPSVVMASPGGLQSGLSRQLFDRWCSD 1241
SMN+RIRNQFANSNPFDFKHISPLKSIENF DVGPSVVMASPGGLQSGLSRQLFD WCSD
Sbjct: 299 SMNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPGGLQSGLSRQLFDMWCSD 358
Query: 1240 KKNACVIPGYVVEGTLAKTIISEPKEITQMGGLTVALNMQVHYISFSAHADYAQTSTFLQ 1061
KKNACVIPGYVV GTLAKTII+EPKE+T M GLT LNMQVHYISFSAHAD+AQTSTFL+
Sbjct: 359 KKNACVIPGYVVGGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLK 418
Query: 1060 ELMPPNIILVHGESHEMERLRQKLTTVFTDGNTKIMTPKNCQSVEMHFNSQKMAKAIGKL 881
ELMPPNIILVHGE++EM RL+QKL T F D NTKI++PKNCQSVEM+FNS+KMAK IG+L
Sbjct: 419 ELMPPNIILVHGEANEMGRLKQKLITQFADCNTKIISPKNCQSVEMYFNSEKMAKTIGRL 478
Query: 880 AEKTPEAGETVSGLLVKKGFTYQFMAPEDLHVFSQLSTANVIQRITIPYSGAFAIIKHRL 701
AEKTPE GETVSGLLVKKGFTYQ MAP+DLHVF QLSTANV QRITIPY+GAF +IKHRL
Sbjct: 479 AEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFWQLSTANVTQRITIPYTGAFGVIKHRL 538
Query: 700 KQIYESVEPSTDEESGVPILRVHDRVTVKQESEKHLSLHWSADPISDMVSDSIVALVLNA 521
KQIYESVE DEES VP RVH+RVTVK +SEKH+SLHW++DPISDMVSDSIVALVLN
Sbjct: 539 KQIYESVESLPDEESEVPAFRVHERVTVKHDSEKHISLHWTSDPISDMVSDSIVALVLNI 598
Query: 520 SRELPKVVVELEPSLNEDESVKKTEKIMRALLVSLFGDVKYAEDGKLVINVDGNVAQLDK 341
S E+PKV+VE E E+E+ KK EK++ ALLVSLFGDVK +G LVI+VDGNV LDK
Sbjct: 599 SLEIPKVIVESEAIKTEEENGKKAEKVIHALLVSLFGDVKLEGNGNLVISVDGNVVHLDK 658
Query: 340 QTGEVESENEGLKERVRTAFRRIKSALKPIPLSAA 236
Q+G VESENEGLKERVR AF+RI++A+KPIP S +
Sbjct: 659 QSGNVESENEGLKERVRVAFQRIQNAVKPIPPSVS 693
>ref|XP_002323824.1| predicted protein [Populus trichocarpa] gi|222866826|gb|EEF03957.1|
predicted protein [Populus trichocarpa]
Length = 699
Score = 1183 bits (3061), Expect = 0.0
Identities = 578/693 (83%), Positives = 646/693 (93%), Gaps = 1/693 (0%)
Frame = -2
Query: 2320 MASIGQPASSLKRRDSMTIREG-DELTITPLGAGSEVGRSCVHMTYKGKTVLFDCGIHPA 2144
MAS GQ + SLKRRD+ REG D+LT+TPLGAG+EVGRSCV+M++KGKTVLFDCGIHPA
Sbjct: 1 MASTGQ-SQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPA 59
Query: 2143 YSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLL 1964
YSGMAALPYFDEIDPSTIDVLL+THFHLDHAASLPYFLEKTTF+GRVFMTHATKA+YKLL
Sbjct: 60 YSGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLL 119
Query: 1963 LSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM 1784
L+DYVKVSKVSVEDML+DE+DI RSMDKIEVIDFHQT++VNGI+FWCYTAGHVLGAAMFM
Sbjct: 120 LTDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFM 179
Query: 1783 VDVAGVRVLYTGDYSREEDRHLRAAELPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVI 1604
VD+AGVRVLYTGDYSREEDRHLRAAE+PQFSPD+CIIESTYGVQLHQPRHIREKRFTDVI
Sbjct: 180 VDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVI 239
Query: 1603 HSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCLAVYQTYI 1424
HSTI+ GGRVLIPAFALGRAQELLLILDEYWSNHPELHN+P+YYASPLAK+C+ VYQTYI
Sbjct: 240 HSTISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYI 299
Query: 1423 NSMNDRIRNQFANSNPFDFKHISPLKSIENFEDVGPSVVMASPGGLQSGLSRQLFDRWCS 1244
SMN+RIRNQFA+SNPF FKHISPL SIE+F DVGPSVVMA+PGGLQSGLSRQLFD WCS
Sbjct: 300 LSMNERIRNQFADSNPFKFKHISPLNSIEDFTDVGPSVVMATPGGLQSGLSRQLFDMWCS 359
Query: 1243 DKKNACVIPGYVVEGTLAKTIISEPKEITQMGGLTVALNMQVHYISFSAHADYAQTSTFL 1064
DKKNACVIPG++VEGTLAKTII+EPKE+ M GLT LNMQVHYISFSAHADYAQTSTFL
Sbjct: 360 DKKNACVIPGFLVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFL 419
Query: 1063 QELMPPNIILVHGESHEMERLRQKLTTVFTDGNTKIMTPKNCQSVEMHFNSQKMAKAIGK 884
+ELMPPNIILVHGE++EM RL+QKL T FTDGNTKI+TPKNCQSVEM+FNS+KMAK GK
Sbjct: 420 KELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEMYFNSEKMAKTTGK 479
Query: 883 LAEKTPEAGETVSGLLVKKGFTYQFMAPEDLHVFSQLSTANVIQRITIPYSGAFAIIKHR 704
LAE+TP+ GETVSG+LVKKGFTYQ MAPEDLHVFSQLST N+ QRITIP+SGAF +IKHR
Sbjct: 480 LAERTPDVGETVSGILVKKGFTYQIMAPEDLHVFSQLSTGNITQRITIPFSGAFGVIKHR 539
Query: 703 LKQIYESVEPSTDEESGVPILRVHDRVTVKQESEKHLSLHWSADPISDMVSDSIVALVLN 524
L+QIYESVE TDEESG P L+VH+ VTVKQES++H+SLHW+ADPISDMVSDSIVALVLN
Sbjct: 540 LEQIYESVESGTDEESGSPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLN 599
Query: 523 ASRELPKVVVELEPSLNEDESVKKTEKIMRALLVSLFGDVKYAEDGKLVINVDGNVAQLD 344
SRE+PKV+VE E +E+E+ KK EK++ A LVSLFGDVK E+GKLV+ VDGNVA+LD
Sbjct: 600 ISREVPKVIVESEDIKSEEENEKKAEKVIYAFLVSLFGDVKLGENGKLVLRVDGNVAELD 659
Query: 343 KQTGEVESENEGLKERVRTAFRRIKSALKPIPL 245
KQ+G+VESENEGLKERVRTAFRRI+SA++PIPL
Sbjct: 660 KQSGDVESENEGLKERVRTAFRRIRSAVRPIPL 692
>ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana] gi|30696512|ref|NP_849835.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and
polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage
and polyadenylation specificity factor; 72745-70039
[Arabidopsis thaliana] gi|23297661|gb|AAN13003.1|
putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana] gi|24415578|gb|AAN41458.1|
putative cleavage and polyadenylation specificity factor
73 kDa subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis
thaliana] gi|222423059|dbj|BAH19511.1| AT1G61010
[Arabidopsis thaliana] gi|332195645|gb|AEE33766.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana] gi|332195646|gb|AEE33767.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana] gi|332195647|gb|AEE33768.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana]
Length = 693
Score = 1165 bits (3015), Expect = 0.0
Identities = 566/689 (82%), Positives = 643/689 (93%), Gaps = 1/689 (0%)
Frame = -2
Query: 2299 ASSLKRRDSMTIREGDELTITPLGAGSEVGRSCVHMTYKGKTVLFDCGIHPAYSGMAALP 2120
++SLKRR+ R+GD+L +TPLGAGSEVGRSCV+M+++GK +LFDCGIHPAYSGMAALP
Sbjct: 5 STSLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALP 64
Query: 2119 YFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDYVKVS 1940
YFDEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKA+YKLLL+DYVKVS
Sbjct: 65 YFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS 124
Query: 1939 KVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDVAGVRV 1760
KVSVEDML+DEQDI +SMDKIEVIDFHQT+EVNGI+FWCYTAGHVLGAAMFMVD+AGVR+
Sbjct: 125 KVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRI 184
Query: 1759 LYTGDYSREEDRHLRAAELPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVIHSTIAQGG 1580
LYTGDYSREEDRHLRAAELPQFSPD+CIIEST GVQLHQ RHIREKRFTDVIHST+AQGG
Sbjct: 185 LYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGG 244
Query: 1579 RVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCLAVYQTYINSMNDRIR 1400
RVLIPAFALGRAQELLLILDEYW+NHP+LHN+PIYYASPLAK+C+AVYQTYI SMNDRIR
Sbjct: 245 RVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIR 304
Query: 1399 NQFANSNPFDFKHISPLKSIENFEDVGPSVVMASPGGLQSGLSRQLFDRWCSDKKNACVI 1220
NQFANSNPF FKHISPL SI++F DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+I
Sbjct: 305 NQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACII 364
Query: 1219 PGYVVEGTLAKTIISEPKEITQMGGLTVALNMQVHYISFSAHADYAQTSTFLQELMPPNI 1040
PGY+VEGTLAKTII+EPKE+T M GLT LNMQVHYISFSAHADYAQTSTFL+ELMPPNI
Sbjct: 365 PGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 424
Query: 1039 ILVHGESHEMERLRQKLTTVFTDGNTKIMTPKNCQSVEMHFNSQKMAKAIGKLAEKTPEA 860
ILVHGE++EM RL+QKL T F DGNTKIMTPKNC+SVEM+FNS+K+AK IG+LAEKTP+
Sbjct: 425 ILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDV 484
Query: 859 GETVSGLLVKKGFTYQFMAPEDLHVFSQLSTANVIQRITIPYSGAFAIIKHRLKQIYESV 680
G+TVSG+LVKKGFTYQ MAP++LHVFSQLSTA V QRITIP+ GAF +IKHRL++I+ESV
Sbjct: 485 GDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESV 544
Query: 679 EPSTDEESGVPILRVHDRVTVKQESEKHLSLHWSADPISDMVSDSIVALVLNASRELPKV 500
E STDEESG+P L+VH+RVTVKQESEKH+SL WS+DPISDMVSDSIVAL+LN SRE+PK+
Sbjct: 545 EFSTDEESGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREVPKI 604
Query: 499 VVELEPSL-NEDESVKKTEKIMRALLVSLFGDVKYAEDGKLVINVDGNVAQLDKQTGEVE 323
V+E E ++ +E+E+ KK EK++ ALLVSLFGDVK E+GKLVI VDGNVAQLDK++GEVE
Sbjct: 605 VMEEEDAVKSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVE 664
Query: 322 SENEGLKERVRTAFRRIKSALKPIPLSAA 236
SE+ GLKERVR AF RI+SA+KPIPLSA+
Sbjct: 665 SEHSGLKERVRVAFERIQSAVKPIPLSAS 693