BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00001509
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 hom...   100   3e-19
gb|AAF78276.1|AC020576_20 Contains similarity to formin binding ...    96   4e-18
ref|NP_175113.2| pre-mRNA-processing protein 40A [Arabidopsis th...    96   4e-18
dbj|BAH19565.1| AT1G44910 [Arabidopsis thaliana]                       96   4e-18
ref|NP_001117438.1| pre-mRNA-processing protein 40A [Arabidopsis...    96   4e-18

>ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis
           vinifera]
          Length = 1020

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 84/228 (36%), Positives = 95/228 (41%), Gaps = 65/228 (28%)
 Frame = +1

Query: 67  TMLPQGFNPN-SMQYRP----QQYMP--PASASQQFRA--------------------HF 165
           +M PQ F P  SMQ+RP    QQ  P  PA ASQQFR                      F
Sbjct: 34  SMGPQNFGPPLSMQFRPAVPGQQGHPFIPA-ASQQFRPIGQNISSPNVGGPSGQNQPPQF 92

Query: 166 SQPMHQFPPRPPQ------SAAPFQPQYIPSNMPQL-----PGPTAPPIS---------- 282
           SQ M Q PPRP Q      S+ P    YI  N P       P  TAPP++          
Sbjct: 93  SQAMQQLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSSPQPNQTAPPLNSHMPGLFAPA 152

Query: 283 --------FSSSYTFQPPMQMHTPIXXXXXXXXXXXXXXXXXXXXXXXXX---------S 411
                    ++S  FQP  QMH P+                                  S
Sbjct: 153 SFGQPQSTINASAQFQPISQMHAPVGGQPWLSSGSQSGALVTPVHQAGQQPSVTADIPVS 212

Query: 412 DSNGAPAARQSASDWQEFESSDGRRYYYNKVTKHSSWEKPLELMTPIE 555
             N      QS+SDWQE  S+DGRRYYYNK T+ SSWEKPLELMTPIE
Sbjct: 213 AGNVPNPTHQSSSDWQEHTSADGRRYYYNKKTRLSSWEKPLELMTPIE 260


>gb|AAF78276.1|AC020576_20 Contains similarity to formin binding protein 11 from Mus musculus
           gb|AF135439 and contains multiple FF PF|01846 and WW
           PF|00397 domains. EST gb|AI997587 comes from this gene
           [Arabidopsis thaliana]
          Length = 919

 Score = 95.9 bits (237), Expect = 4e-18
 Identities = 66/200 (33%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
 Frame = +1

Query: 43  YFIDCGAATMLPQGFNPNSMQYRPQQYMPPASASQQFRAHFSQPMHQFPPRPPQSAAPFQ 222
           +F+   +    P G  P ++Q +P QY  P    Q F     QP+H        S    Q
Sbjct: 29  HFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVSVPYIQ 88

Query: 223 PQYIPSNMPQLPGPTAPPIS--------FSSSYTFQP---PMQMHTPIXXXXXXXXXXXX 369
              I ++    P P APP++        FSS YTF P   P Q  T +            
Sbjct: 89  TNKILTSGSTQPQPNAPPMTGFATSGPPFSSPYTFVPSSYPQQQPTSLVQPNSQMHVAGV 148

Query: 370 XXXXXXXXXXXXXSDSNGAPAAR------------------QSASDWQEFESSDGRRYYY 495
                        S S  +P  +                  QSASDWQE  S+DGR+YYY
Sbjct: 149 PPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVSTDPGNLTPQSASDWQEHTSADGRKYYY 208

Query: 496 NKVTKHSSWEKPLELMTPIE 555
           NK TK S+WEKPLELMTP+E
Sbjct: 209 NKRTKQSNWEKPLELMTPLE 228


>ref|NP_175113.2| pre-mRNA-processing protein 40A [Arabidopsis thaliana]
           gi|395406802|sp|B6EUA9.1|PR40A_ARATH RecName:
           Full=Pre-mRNA-processing protein 40A; AltName:
           Full=Mediator of RNA polymerase II transcription subunit
           35a gi|332193941|gb|AEE32062.1| pre-mRNA-processing
           protein 40A [Arabidopsis thaliana]
          Length = 958

 Score = 95.9 bits (237), Expect = 4e-18
 Identities = 66/200 (33%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
 Frame = +1

Query: 43  YFIDCGAATMLPQGFNPNSMQYRPQQYMPPASASQQFRAHFSQPMHQFPPRPPQSAAPFQ 222
           +F+   +    P G  P ++Q +P QY  P    Q F     QP+H        S    Q
Sbjct: 24  HFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVSVPYIQ 83

Query: 223 PQYIPSNMPQLPGPTAPPIS--------FSSSYTFQP---PMQMHTPIXXXXXXXXXXXX 369
              I ++    P P APP++        FSS YTF P   P Q  T +            
Sbjct: 84  TNKILTSGSTQPQPNAPPMTGFATSGPPFSSPYTFVPSSYPQQQPTSLVQPNSQMHVAGV 143

Query: 370 XXXXXXXXXXXXXSDSNGAPAAR------------------QSASDWQEFESSDGRRYYY 495
                        S S  +P  +                  QSASDWQE  S+DGR+YYY
Sbjct: 144 PPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVSTDPGNLTPQSASDWQEHTSADGRKYYY 203

Query: 496 NKVTKHSSWEKPLELMTPIE 555
           NK TK S+WEKPLELMTP+E
Sbjct: 204 NKRTKQSNWEKPLELMTPLE 223


>dbj|BAH19565.1| AT1G44910 [Arabidopsis thaliana]
          Length = 826

 Score = 95.9 bits (237), Expect = 4e-18
 Identities = 66/200 (33%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
 Frame = +1

Query: 43  YFIDCGAATMLPQGFNPNSMQYRPQQYMPPASASQQFRAHFSQPMHQFPPRPPQSAAPFQ 222
           +F+   +    P G  P ++Q +P QY  P    Q F     QP+H        S    Q
Sbjct: 24  HFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVSVPYIQ 83

Query: 223 PQYIPSNMPQLPGPTAPPIS--------FSSSYTFQP---PMQMHTPIXXXXXXXXXXXX 369
              I ++    P P APP++        FSS YTF P   P Q  T +            
Sbjct: 84  TNKILTSGSTQPQPNAPPMTGFATSGPPFSSPYTFVPSSYPQQQPTSLVQPNSQMHVAGV 143

Query: 370 XXXXXXXXXXXXXSDSNGAPAAR------------------QSASDWQEFESSDGRRYYY 495
                        S S  +P  +                  QSASDWQE  S+DGR+YYY
Sbjct: 144 PPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVSTDPGNLTPQSASDWQEHTSADGRKYYY 203

Query: 496 NKVTKHSSWEKPLELMTPIE 555
           NK TK S+WEKPLELMTP+E
Sbjct: 204 NKRTKQSNWEKPLELMTPLE 223


>ref|NP_001117438.1| pre-mRNA-processing protein 40A [Arabidopsis thaliana]
           gi|332193942|gb|AEE32063.1| pre-mRNA-processing protein
           40A [Arabidopsis thaliana]
          Length = 926

 Score = 95.9 bits (237), Expect = 4e-18
 Identities = 66/200 (33%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
 Frame = +1

Query: 43  YFIDCGAATMLPQGFNPNSMQYRPQQYMPPASASQQFRAHFSQPMHQFPPRPPQSAAPFQ 222
           +F+   +    P G  P ++Q +P QY  P    Q F     QP+H        S    Q
Sbjct: 24  HFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVSVPYIQ 83

Query: 223 PQYIPSNMPQLPGPTAPPIS--------FSSSYTFQP---PMQMHTPIXXXXXXXXXXXX 369
              I ++    P P APP++        FSS YTF P   P Q  T +            
Sbjct: 84  TNKILTSGSTQPQPNAPPMTGFATSGPPFSSPYTFVPSSYPQQQPTSLVQPNSQMHVAGV 143

Query: 370 XXXXXXXXXXXXXSDSNGAPAAR------------------QSASDWQEFESSDGRRYYY 495
                        S S  +P  +                  QSASDWQE  S+DGR+YYY
Sbjct: 144 PPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVSTDPGNLTPQSASDWQEHTSADGRKYYY 203

Query: 496 NKVTKHSSWEKPLELMTPIE 555
           NK TK S+WEKPLELMTP+E
Sbjct: 204 NKRTKQSNWEKPLELMTPLE 223