BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00000991
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   119   2e-25
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   115   4e-24

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  119 bits (299), Expect = 2e-25
 Identities = 75/143 (52%), Positives = 90/143 (62%), Gaps = 11/143 (7%)
 Frame = -1

Query: 397 AWVPLRIPTSAGGSSRRERPQRAVTKQPVVRPIRAP--VKVENRFSPLCVEE----SLVA 236
           AWVP+R P +AGG+ RRERP     K   VRPIR P  VK  NRF+PL V+E    ++ A
Sbjct: 45  AWVPVRAPIAAGGNFRRERPLVVSHKTQQVRPIRMPAAVKTSNRFAPLSVKEGVTAAVAA 104

Query: 235 PLKSKLTYADVVR--AKVSPAKAKKGVVTLIETSKDFKLFED---LPEPVAIPGQTPQEA 71
           P+  K +YAD +R  A V P+  +KGVVTL+ET KDF LF D     + V  PGQT  EA
Sbjct: 105 PINPKKSYADALRSSAFVKPS-VRKGVVTLVETEKDFALFGDEFTQNQVVPCPGQTLPEA 163

Query: 70  ASLSREFAKRALVFSGRRLMPVG 2
            +L REF KR L FSGRRL   G
Sbjct: 164 EALQREFHKRTLAFSGRRLSVSG 186


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  115 bits (288), Expect = 4e-24
 Identities = 77/143 (53%), Positives = 88/143 (61%), Gaps = 11/143 (7%)
 Frame = -1

Query: 397 AWVPLRIPTSAGGSSRRERPQRAVTKQPVVRPIRAP--VKVENRFSPLCVEE---SLVAP 233
           AWVP+R P +AGGS RRERP     K   VRPIR P  VK  NRF+ L V+E     VAP
Sbjct: 45  AWVPVRAPIAAGGSFRRERPPVVSHKTQQVRPIRTPTAVKTSNRFASLSVKEEAPEAVAP 104

Query: 232 LK-SKLTYADVVR--AKVSPAKAKKGVVTLIETSKDFKLFED---LPEPVAIPGQTPQEA 71
               K +YAD +R  A V P+ A+KGVVTL+ET KDF LF D     + V  PGQT  EA
Sbjct: 105 FNPKKKSYADALRSSAFVKPS-ARKGVVTLVETEKDFALFCDEFTQNQVVPCPGQTLSEA 163

Query: 70  ASLSREFAKRALVFSGRRLMPVG 2
            SL REF KRA  FSG+RL   G
Sbjct: 164 ESLQREFHKRAFAFSGKRLSVSG 186