BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00000852
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003548187.1| PREDICTED: 50S ribosomal protein L6, chlorop...   331   2e-88
ref|NP_172011.1| 50S ribosomal protein L6 [Arabidopsis thaliana]...   330   2e-88
ref|XP_003548188.1| PREDICTED: 50S ribosomal protein L6, chlorop...   330   4e-88
ref|XP_002892273.1| EMB2394 [Arabidopsis lyrata subsp. lyrata] g...   327   2e-87
ref|NP_001147133.1| 50S ribosomal protein L6 [Zea mays] gi|19560...   327   2e-87

>ref|XP_003548187.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 1
           [Glycine max]
          Length = 226

 Score =  331 bits (848), Expect = 2e-88
 Identities = 159/217 (73%), Positives = 190/217 (87%), Gaps = 1/217 (0%)
 Frame = -2

Query: 888 MAASISAPFQ-ARLKSSFTGDTNAIHLAAKNRVVYTVRRSVIECKESRIGKQPIEVPSNV 712
           MA+S+++ F+ + LKS F G+TN + +++         R  +ECKESRIGKQPI VPSNV
Sbjct: 1   MASSVTSSFRISNLKSVFVGETNKLRVSSVPGAHVGFNRKTVECKESRIGKQPIPVPSNV 60

Query: 711 TITMEGQDFKVKGPLGELAITYPREVKLEKEETGFLRIRKAVETRRANQMHGLFRTLTDN 532
           T+ +EGQD +VKGPLGELA+TYPREV +E+EE+G LR++KAVETRRANQMHGLFRTLTDN
Sbjct: 61  TVKLEGQDIQVKGPLGELALTYPREVLVEREESGTLRVKKAVETRRANQMHGLFRTLTDN 120

Query: 531 MVVGVSKGFEKKLQLIGVGYRATVEGKDIVLNLGFSHPVRMQIPDGLNVKVEENTKITVS 352
           +V+GVSKGF+KKLQL+GVGYRA VEG ++VLNLGFSHPV+M IPDGL VKVEENT+ITVS
Sbjct: 121 LVIGVSKGFDKKLQLVGVGYRAMVEGNEVVLNLGFSHPVKMTIPDGLKVKVEENTRITVS 180

Query: 351 GYDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIIRR 241
           GYDKSE+GQFAASIRKWRPPEPYKGKGVKYADEI+RR
Sbjct: 181 GYDKSEVGQFAASIRKWRPPEPYKGKGVKYADEIVRR 217


>ref|NP_172011.1| 50S ribosomal protein L6 [Arabidopsis thaliana]
           gi|75277355|sp|O23049.1|RK6_ARATH RecName: Full=50S
           ribosomal protein L6, chloroplastic; AltName:
           Full=Protein EMBRYO DEFECTIVE 2394; Flags: Precursor
           gi|189096131|pdb|3BBO|I Chain I, Homology Model For The
           Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em
           Map Of The 70s Chlororibosome
           gi|13430706|gb|AAK25975.1|AF360265_1 putative
           chloroplast 50S ribosomal protein L6 [Arabidopsis
           thaliana] gi|2388578|gb|AAB71459.1| Similar to
           Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
           [Arabidopsis thaliana] gi|14532906|gb|AAK64135.1|
           putative chloroplast 50S ribosomal protein L6
           [Arabidopsis thaliana] gi|21553840|gb|AAM62933.1|
           putative chloroplast 50S ribosomal protein L6
           [Arabidopsis thaliana] gi|332189681|gb|AEE27802.1| 50S
           ribosomal protein L6 [Arabidopsis thaliana]
          Length = 223

 Score =  330 bits (847), Expect = 2e-88
 Identities = 163/216 (75%), Positives = 186/216 (86%)
 Frame = -2

Query: 888 MAASISAPFQARLKSSFTGDTNAIHLAAKNRVVYTVRRSVIECKESRIGKQPIEVPSNVT 709
           MA+S+ + FQ R  S+F GD N   +++            IECKESRIGKQPI VPSNVT
Sbjct: 1   MASSLVSSFQPR--SAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVT 58

Query: 708 ITMEGQDFKVKGPLGELAITYPREVKLEKEETGFLRIRKAVETRRANQMHGLFRTLTDNM 529
           I +EGQD KVKGPLGELA+TYPREV+L KEE+GFLR++K VETRRANQMHGLFRTLTDNM
Sbjct: 59  IALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNM 118

Query: 528 VVGVSKGFEKKLQLIGVGYRATVEGKDIVLNLGFSHPVRMQIPDGLNVKVEENTKITVSG 349
           VVGVSKGFEKKL L+GVGYRATV+GK++VLNLGFSHPV+MQIPD L VKVEENT+ITVSG
Sbjct: 119 VVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSG 178

Query: 348 YDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIIRR 241
           YDKSEIGQFAA++RKWRPPEPYKGKGVKY+DEI+RR
Sbjct: 179 YDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRR 214


>ref|XP_003548188.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 2
           [Glycine max]
          Length = 223

 Score =  330 bits (845), Expect = 4e-88
 Identities = 158/216 (73%), Positives = 189/216 (87%)
 Frame = -2

Query: 888 MAASISAPFQARLKSSFTGDTNAIHLAAKNRVVYTVRRSVIECKESRIGKQPIEVPSNVT 709
           MA+S+++ F  R++S F G+TN + +++         R  +ECKESRIGKQPI VPSNVT
Sbjct: 1   MASSVTSSF--RIRSVFVGETNKLRVSSVPGAHVGFNRKTVECKESRIGKQPIPVPSNVT 58

Query: 708 ITMEGQDFKVKGPLGELAITYPREVKLEKEETGFLRIRKAVETRRANQMHGLFRTLTDNM 529
           + +EGQD +VKGPLGELA+TYPREV +E+EE+G LR++KAVETRRANQMHGLFRTLTDN+
Sbjct: 59  VKLEGQDIQVKGPLGELALTYPREVLVEREESGTLRVKKAVETRRANQMHGLFRTLTDNL 118

Query: 528 VVGVSKGFEKKLQLIGVGYRATVEGKDIVLNLGFSHPVRMQIPDGLNVKVEENTKITVSG 349
           V+GVSKGF+KKLQL+GVGYRA VEG ++VLNLGFSHPV+M IPDGL VKVEENT+ITVSG
Sbjct: 119 VIGVSKGFDKKLQLVGVGYRAMVEGNEVVLNLGFSHPVKMTIPDGLKVKVEENTRITVSG 178

Query: 348 YDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIIRR 241
           YDKSE+GQFAASIRKWRPPEPYKGKGVKYADEI+RR
Sbjct: 179 YDKSEVGQFAASIRKWRPPEPYKGKGVKYADEIVRR 214


>ref|XP_002892273.1| EMB2394 [Arabidopsis lyrata subsp. lyrata]
           gi|297338115|gb|EFH68532.1| EMB2394 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 223

 Score =  327 bits (839), Expect = 2e-87
 Identities = 162/215 (75%), Positives = 184/215 (85%)
 Frame = -2

Query: 888 MAASISAPFQARLKSSFTGDTNAIHLAAKNRVVYTVRRSVIECKESRIGKQPIEVPSNVT 709
           MA+S+ + FQ R  S+F GD N   +++            IECKESRIGKQPI VPSNVT
Sbjct: 1   MASSLVSSFQPR--SAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVT 58

Query: 708 ITMEGQDFKVKGPLGELAITYPREVKLEKEETGFLRIRKAVETRRANQMHGLFRTLTDNM 529
           I +EGQD KVKGPLGELA+TYPREV+L KEE+G LR++K VETRRANQMHGLFRTLTDNM
Sbjct: 59  IALEGQDLKVKGPLGELALTYPREVELTKEESGLLRVKKTVETRRANQMHGLFRTLTDNM 118

Query: 528 VVGVSKGFEKKLQLIGVGYRATVEGKDIVLNLGFSHPVRMQIPDGLNVKVEENTKITVSG 349
           VVGVSKGFEKKL L+GVGYRATVEGK++VLNLGFSHPV+MQIPD L VKVEENT+ITVSG
Sbjct: 119 VVGVSKGFEKKLILVGVGYRATVEGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSG 178

Query: 348 YDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIIR 244
           YDKSEIGQFAA++RKWRPPEPYKGKGVKY+DEI+R
Sbjct: 179 YDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVR 213


>ref|NP_001147133.1| 50S ribosomal protein L6 [Zea mays] gi|195607520|gb|ACG25590.1| 50S
           ribosomal protein L6 [Zea mays]
          Length = 224

 Score =  327 bits (838), Expect = 2e-87
 Identities = 164/217 (75%), Positives = 187/217 (86%), Gaps = 1/217 (0%)
 Frame = -2

Query: 888 MAASISAPFQARLKSSFTGDTNAIHLAAKNRVVYTVRRS-VIECKESRIGKQPIEVPSNV 712
           MA+S+ + FQ R  SSF GD NA  ++           S  IECKESRIGKQPI VPSNV
Sbjct: 1   MASSVVSSFQPR--SSFLGDRNAFKVSTTPPFTQVGFSSKTIECKESRIGKQPISVPSNV 58

Query: 711 TITMEGQDFKVKGPLGELAITYPREVKLEKEETGFLRIRKAVETRRANQMHGLFRTLTDN 532
           TI +EGQD KVKGPLGELA+TYPREV+L KE++GFLR++K VETRRANQMHGLFRTLTDN
Sbjct: 59  TIALEGQDLKVKGPLGELALTYPREVELLKEDSGFLRVKKTVETRRANQMHGLFRTLTDN 118

Query: 531 MVVGVSKGFEKKLQLIGVGYRATVEGKDIVLNLGFSHPVRMQIPDGLNVKVEENTKITVS 352
           MVVGVSKGFEKKL ++GVGYRATVEGK++VLNLGFSHPV+MQIP+ L VKVEENT+ITVS
Sbjct: 119 MVVGVSKGFEKKLIVVGVGYRATVEGKELVLNLGFSHPVKMQIPESLKVKVEENTRITVS 178

Query: 351 GYDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIIRR 241
           GYDKSEIGQFAA++RKWRPPEPYKGKGVKY+DEI+RR
Sbjct: 179 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRR 215