BLASTX nr result
ID: Jatropha_contig00044123
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00044123
(435 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7... 262 4e-68
ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili... 230 2e-58
ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul... 229 2e-58
gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla... 229 2e-58
ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus co... 228 6e-58
gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloropla... 223 1e-56
gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. s... 222 3e-56
gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla... 222 4e-56
gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloropla... 218 6e-55
gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloropla... 218 8e-55
gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloropla... 217 1e-54
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap... 216 2e-54
gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloropla... 216 2e-54
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 215 4e-54
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri] 215 4e-54
gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloropla... 215 5e-54
gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloropla... 214 9e-54
ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia util... 213 3e-53
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ... 213 3e-53
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ... 213 3e-53
>ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha
curcas]
Length = 1394
Score = 262 bits (669), Expect = 4e-68
Identities = 131/137 (95%), Positives = 132/137 (96%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY AILYENSDLLAKR RN FIIPFQS+QEREKELMTHSAI IEIPRNGIFR N
Sbjct: 553 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 613 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 672
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYIFPESSSLM
Sbjct: 673 FFIPEEVYIFPESSSLM 689
>ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
gi|308523496|gb|ADO33546.1| RNA polymerase beta''
subunit [Hevea brasiliensis]
Length = 1395
Score = 230 bits (586), Expect = 2e-58
Identities = 119/137 (86%), Positives = 120/137 (87%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY ILYENSDLLAKR RN FIIPFQS+QEREKELMTHSAI IEIP NGIFR N
Sbjct: 553 TGHCNLIYPTILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPINGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVF YFDDPQYRRKS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVD F
Sbjct: 613 SVFVYFDDPQYRRKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDCF 667
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 668 FFIPEEVYILPESSSLM 684
>ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|157695875|gb|ABV66144.1| RNA polymerase beta
subunit [Manihot esculenta]
Length = 1393
Score = 229 bits (585), Expect = 2e-58
Identities = 118/137 (86%), Positives = 121/137 (88%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY ILY+NSDLLAKR RN FIIPFQS+QEREKELMT SAI IEIP NGIFR N
Sbjct: 553 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVFAYFDDPQYR+KS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF
Sbjct: 613 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 667
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 668 FFIPEEVYILPESSSLM 684
>gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
esculenta]
Length = 1281
Score = 229 bits (585), Expect = 2e-58
Identities = 118/137 (86%), Positives = 121/137 (88%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY ILY+NSDLLAKR RN FIIPFQS+QEREKELMT SAI IEIP NGIFR N
Sbjct: 523 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 582
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVFAYFDDPQYR+KS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF
Sbjct: 583 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 637
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 638 FFIPEEVYILPESSSLM 654
>ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis]
gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 1405
Score = 228 bits (581), Expect = 6e-58
Identities = 120/138 (86%), Positives = 123/138 (89%), Gaps = 1/138 (0%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHS-AI*IEIPRNGIFR* 237
TGHCNLIY AILYENSDLLAKR RN FIIPFQS+QE+EK+LMT S AI IEIP NGIFR
Sbjct: 556 TGHCNLIYPAILYENSDLLAKRRRNKFIIPFQSIQEQEKKLMTRSSAISIEIPLNGIFRR 615
Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
NSVFAYFDDPQYRRKSSGITK YG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR
Sbjct: 616 NSVFAYFDDPQYRRKSSGITK-----YGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 670
Query: 56 FFFIPEEVYIFPESSSLM 3
FFFIPEEVYI PESSSLM
Sbjct: 671 FFFIPEEVYILPESSSLM 688
>gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloroplast) [Connarus
conchocarpus]
Length = 1277
Score = 223 bits (569), Expect = 1e-56
Identities = 115/137 (83%), Positives = 122/137 (89%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLI AIL+ENSDL+AKR RN FIIPFQS+QEREKELM S I IEIP +GIFR N
Sbjct: 522 TGHCNLIDPAILHENSDLVAKRRRNKFIIPFQSIQEREKELMPRSDISIEIPISGIFRRN 581
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYFDDPQYRRKS SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQ+KVDRF
Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQIKVDRF 636
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYIFPESSS+M
Sbjct: 637 FFIPEEVYIFPESSSIM 653
>gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens]
Length = 814
Score = 222 bits (566), Expect = 3e-56
Identities = 114/137 (83%), Positives = 120/137 (87%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY ILYENSDLLAKR RN FIIPFQS+QEREKE MT+S I IEIP NGIFR N
Sbjct: 79 TGHCNLIYPPILYENSDLLAKRRRNKFIIPFQSIQEREKEQMTYSTISIEIPINGIFRRN 138
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVF+YFDDPQY+RKS SGITKYG IGVHSIVKKEDLI Y+GVKEFKPKYQM+VDRF
Sbjct: 139 SVFSYFDDPQYQRKS-----SGITKYGAIGVHSIVKKEDLIAYQGVKEFKPKYQMQVDRF 193
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 194 FFIPEEVYILPESSSLM 210
>gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
lucida]
Length = 1280
Score = 222 bits (565), Expect = 4e-56
Identities = 115/137 (83%), Positives = 119/137 (86%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY AIL+ENSDLLAKR N FIIPFQS QEREKELM S I IEIP +GIFR N
Sbjct: 522 TGHCNLIYPAILHENSDLLAKRRINKFIIPFQSTQEREKELMPRSGISIEIPISGIFRRN 581
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYFDDPQYRRKS SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 636
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PE SS+M
Sbjct: 637 FFIPEEVYILPEYSSIM 653
>gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloroplast) [Morella
cerifera]
Length = 1274
Score = 218 bits (555), Expect = 6e-55
Identities = 110/136 (80%), Positives = 119/136 (87%)
Frame = -2
Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
GHCNLIY AILYENSDLLAKR RN FIIPF S+QEREKELM+ S I IEIP NGIFR NS
Sbjct: 521 GHCNLIYPAILYENSDLLAKRRRNRFIIPFHSIQEREKELMSPSGISIEIPVNGIFRKNS 580
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDPQYRRK+ SGITKYGTIGVHSI+KKEDLIEYRGV+EFKPKYQMK+DRFF
Sbjct: 581 ILAYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVQEFKPKYQMKIDRFF 635
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEV+I PES S+M
Sbjct: 636 FIPEEVHILPESCSIM 651
>gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tapiscia
sinensis]
Length = 1280
Score = 218 bits (554), Expect = 8e-55
Identities = 110/138 (79%), Positives = 119/138 (86%)
Frame = -2
Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237
GTGHCNLIY AIL+EN DLLAKR RN FIIPFQS+QE+EKELM S I IEIP NGIFR
Sbjct: 519 GTGHCNLIYSAILHENYDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRR 578
Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
NS+ A+FDDPQYRR S SGITKYGTIG HSIVKKED+IEYRGVK+FKPKYQMKVDR
Sbjct: 579 NSILAFFDDPQYRRNS-----SGITKYGTIGAHSIVKKEDVIEYRGVKKFKPKYQMKVDR 633
Query: 56 FFFIPEEVYIFPESSSLM 3
FFFIPEEV+I PESSS+M
Sbjct: 634 FFFIPEEVHILPESSSIM 651
>gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus
praecox]
Length = 1280
Score = 217 bits (552), Expect = 1e-54
Identities = 110/136 (80%), Positives = 118/136 (86%)
Frame = -2
Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
GHCN IY AIL+ENSDLLAKR RN IIPFQS+QE+EKELM+HS I IEIP NGIFR NS
Sbjct: 523 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELMSHSGISIEIPINGIFRRNS 582
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+Y R S SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF
Sbjct: 583 ILAYFDDPRYTRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 637
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEV+I PESSS+M
Sbjct: 638 FIPEEVHILPESSSIM 653
>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
Length = 1390
Score = 216 bits (551), Expect = 2e-54
Identities = 109/136 (80%), Positives = 119/136 (87%)
Frame = -2
Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
GHCN IY AIL+ENSDLLAKR RN IIPFQS+QE+EKEL++HS I IEIP NGIFR NS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELLSHSGISIEIPINGIFRRNS 613
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+YRR S SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKY+MKVDRFF
Sbjct: 614 ILAYFDDPRYRRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYKMKVDRFF 668
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEV+I PESSS+M
Sbjct: 669 FIPEEVHILPESSSIM 684
>gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes
icosandra x Ixonanthes cuneata]
Length = 1262
Score = 216 bits (550), Expect = 2e-54
Identities = 112/137 (81%), Positives = 117/137 (85%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGHCNLIY AIL+ENSDLLAKR RN FIIPFQS+QE+EKELM S I +EIP NGIF N
Sbjct: 520 TGHCNLIYPAILHENSDLLAKRRRNRFIIPFQSIQEQEKELMPCSDISLEIPINGIFHRN 579
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYF DPQYRR S SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 580 SIFAYFGDPQYRRNS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 634
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PE SSLM
Sbjct: 635 FFIPEEVYILPEFSSLM 651
>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis
corallina]
Length = 1389
Score = 215 bits (548), Expect = 4e-54
Identities = 111/138 (80%), Positives = 118/138 (85%)
Frame = -2
Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237
GT CNLIY AILYENSDLLAKR +N FIIPFQS+QEREKELM S I IEIP NGIFR
Sbjct: 552 GTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRR 611
Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
NS+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDR
Sbjct: 612 NSILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDR 666
Query: 56 FFFIPEEVYIFPESSSLM 3
FFFIPEEV+I P SSS+M
Sbjct: 667 FFFIPEEVHILPGSSSIM 684
>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
Length = 829
Score = 215 bits (548), Expect = 4e-54
Identities = 111/138 (80%), Positives = 118/138 (85%)
Frame = -2
Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237
GT CNLIY AILYENSDLLAKR +N FIIPFQS+QEREKELM S I IEIP NGIFR
Sbjct: 69 GTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRR 128
Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
NS+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDR
Sbjct: 129 NSILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDR 183
Query: 56 FFFIPEEVYIFPESSSLM 3
FFFIPEEV+I P SSS+M
Sbjct: 184 FFFIPEEVHILPGSSSIM 201
>gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloroplast) [Alnus
alnobetula subsp. sinuata]
Length = 1273
Score = 215 bits (547), Expect = 5e-54
Identities = 110/134 (82%), Positives = 117/134 (87%)
Frame = -2
Query: 404 CNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NSVF 225
CNLIY AILYENSDLLAKR RN FIIPFQS+QEREKELM S I IEIP NGIFR NS+
Sbjct: 520 CNLIYPAILYENSDLLAKRRRNRFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKNSIL 579
Query: 224 AYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFI 45
AYFDDPQYRRK+ SGITKYGTIGVHSI+KKEDLIEYRGVKE KPKYQMK+DRFFFI
Sbjct: 580 AYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEIKPKYQMKIDRFFFI 634
Query: 44 PEEVYIFPESSSLM 3
PEEV+I PESSS+M
Sbjct: 635 PEEVHILPESSSIM 648
>gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloroplast) [Juglans
nigra]
Length = 1268
Score = 214 bits (545), Expect = 9e-54
Identities = 109/137 (79%), Positives = 119/137 (86%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
TGH NLIY AILY+N DLLAKR +N FIIPFQS+QEREKELM S I IEIP NGIFR N
Sbjct: 519 TGHFNLIYPAILYKNYDLLAKRQKNXFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKN 578
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+ AYFDDPQYR+K+ SGITKYGTIGVHSI+KKEDLIEYRGVKEFKPKYQMK+DRF
Sbjct: 579 SILAYFDDPQYRKKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEFKPKYQMKIDRF 633
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEV+I PESSS+M
Sbjct: 634 FFIPEEVHILPESSSIM 650
>ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia utilis]
gi|501418813|gb|AGL94690.1| RNA polymerase beta' subunit
[Prinsepia utilis]
Length = 1384
Score = 213 bits (541), Expect = 3e-53
Identities = 109/139 (78%), Positives = 120/139 (86%), Gaps = 2/139 (1%)
Frame = -2
Query: 413 TGHCNLIYCAILYENSD--LLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR 240
TGHCNL + AIL +NSD LL KR RN FIIPFQS+QEREKELMT +I IEIP+NGIFR
Sbjct: 549 TGHCNLKFPAILRDNSDFFLLTKRRRNRFIIPFQSIQEREKELMTRPSISIEIPKNGIFR 608
Query: 239 *NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVD 60
NS+ AYFDDPQYRRKSSGITK YGT+G+HSI+KKEDLIEYRGVKEFKPKYQMKVD
Sbjct: 609 RNSILAYFDDPQYRRKSSGITK-----YGTVGLHSILKKEDLIEYRGVKEFKPKYQMKVD 663
Query: 59 RFFFIPEEVYIFPESSSLM 3
RFFFIPEEV+I PESSS+M
Sbjct: 664 RFFFIPEEVHILPESSSIM 682
>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
gi|479279193|gb|AGJ72047.1| RNA polymerase beta''
subunit (chloroplast) [Tetracentron sinense]
Length = 1378
Score = 213 bits (541), Expect = 3e-53
Identities = 110/136 (80%), Positives = 115/136 (84%)
Frame = -2
Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
GHCN IY AIL+ENSDLLAKR RN FIIPFQS QEREKELM S I IEIP NGIFR NS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF
Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEVYI P SSS+M
Sbjct: 669 FIPEEVYILPGSSSIM 684
>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
beta'' subunit (chloroplast) [Trochodendron aralioides]
gi|479279286|gb|AGJ72139.1| RNA polymerase beta''
subunit (chloroplast) [Trochodendron aralioides]
Length = 1381
Score = 213 bits (541), Expect = 3e-53
Identities = 110/136 (80%), Positives = 115/136 (84%)
Frame = -2
Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
GHCN IY AIL+ENSDLLAKR RN FIIPFQS QEREKELM S I IEIP NGIFR NS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF
Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEVYI P SSS+M
Sbjct: 669 FIPEEVYILPGSSSIM 684