BLASTX nr result
ID: Jatropha_contig00044123
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Jatropha_contig00044123 (435 letters) Database: NCBI-nr (updated 2014/02/11) 35,149,712 sequences; 12,374,887,350 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7... 262 4e-68 ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili... 230 2e-58 ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul... 229 2e-58 gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla... 229 2e-58 ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus co... 228 6e-58 gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloropla... 223 1e-56 gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. s... 222 3e-56 gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla... 222 4e-56 gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloropla... 218 6e-55 gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloropla... 218 8e-55 gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloropla... 217 1e-54 gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap... 216 2e-54 gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloropla... 216 2e-54 gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 215 4e-54 gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri] 215 4e-54 gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloropla... 215 5e-54 gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloropla... 214 9e-54 ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia util... 213 3e-53 ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ... 213 3e-53 ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ... 213 3e-53 >ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha curcas] Length = 1394 Score = 262 bits (669), Expect = 4e-68 Identities = 131/137 (95%), Positives = 132/137 (96%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY AILYENSDLLAKR RN FIIPFQS+QEREKELMTHSAI IEIPRNGIFR N Sbjct: 553 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 612 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF Sbjct: 613 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 672 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYIFPESSSLM Sbjct: 673 FFIPEEVYIFPESSSLM 689 >ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis] gi|308523496|gb|ADO33546.1| RNA polymerase beta'' subunit [Hevea brasiliensis] Length = 1395 Score = 230 bits (586), Expect = 2e-58 Identities = 119/137 (86%), Positives = 120/137 (87%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY ILYENSDLLAKR RN FIIPFQS+QEREKELMTHSAI IEIP NGIFR N Sbjct: 553 TGHCNLIYPTILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPINGIFRRN 612 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 SVF YFDDPQYRRKS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVD F Sbjct: 613 SVFVYFDDPQYRRKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDCF 667 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYI PESSSLM Sbjct: 668 FFIPEEVYILPESSSLM 684 >ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta] gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' gi|157695875|gb|ABV66144.1| RNA polymerase beta subunit [Manihot esculenta] Length = 1393 Score = 229 bits (585), Expect = 2e-58 Identities = 118/137 (86%), Positives = 121/137 (88%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY ILY+NSDLLAKR RN FIIPFQS+QEREKELMT SAI IEIP NGIFR N Sbjct: 553 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 612 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 SVFAYFDDPQYR+KS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF Sbjct: 613 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 667 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYI PESSSLM Sbjct: 668 FFIPEEVYILPESSSLM 684 >gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot esculenta] Length = 1281 Score = 229 bits (585), Expect = 2e-58 Identities = 118/137 (86%), Positives = 121/137 (88%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY ILY+NSDLLAKR RN FIIPFQS+QEREKELMT SAI IEIP NGIFR N Sbjct: 523 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 582 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 SVFAYFDDPQYR+KS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF Sbjct: 583 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 637 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYI PESSSLM Sbjct: 638 FFIPEEVYILPESSSLM 654 >ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis] gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit [Ricinus communis] Length = 1405 Score = 228 bits (581), Expect = 6e-58 Identities = 120/138 (86%), Positives = 123/138 (89%), Gaps = 1/138 (0%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHS-AI*IEIPRNGIFR* 237 TGHCNLIY AILYENSDLLAKR RN FIIPFQS+QE+EK+LMT S AI IEIP NGIFR Sbjct: 556 TGHCNLIYPAILYENSDLLAKRRRNKFIIPFQSIQEQEKKLMTRSSAISIEIPLNGIFRR 615 Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57 NSVFAYFDDPQYRRKSSGITK YG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR Sbjct: 616 NSVFAYFDDPQYRRKSSGITK-----YGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 670 Query: 56 FFFIPEEVYIFPESSSLM 3 FFFIPEEVYI PESSSLM Sbjct: 671 FFFIPEEVYILPESSSLM 688 >gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloroplast) [Connarus conchocarpus] Length = 1277 Score = 223 bits (569), Expect = 1e-56 Identities = 115/137 (83%), Positives = 122/137 (89%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLI AIL+ENSDL+AKR RN FIIPFQS+QEREKELM S I IEIP +GIFR N Sbjct: 522 TGHCNLIDPAILHENSDLVAKRRRNKFIIPFQSIQEREKELMPRSDISIEIPISGIFRRN 581 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 S+FAYFDDPQYRRKS SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQ+KVDRF Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQIKVDRF 636 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYIFPESSS+M Sbjct: 637 FFIPEEVYIFPESSSIM 653 >gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens] Length = 814 Score = 222 bits (566), Expect = 3e-56 Identities = 114/137 (83%), Positives = 120/137 (87%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY ILYENSDLLAKR RN FIIPFQS+QEREKE MT+S I IEIP NGIFR N Sbjct: 79 TGHCNLIYPPILYENSDLLAKRRRNKFIIPFQSIQEREKEQMTYSTISIEIPINGIFRRN 138 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 SVF+YFDDPQY+RKS SGITKYG IGVHSIVKKEDLI Y+GVKEFKPKYQM+VDRF Sbjct: 139 SVFSYFDDPQYQRKS-----SGITKYGAIGVHSIVKKEDLIAYQGVKEFKPKYQMQVDRF 193 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYI PESSSLM Sbjct: 194 FFIPEEVYILPESSSLM 210 >gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia lucida] Length = 1280 Score = 222 bits (565), Expect = 4e-56 Identities = 115/137 (83%), Positives = 119/137 (86%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY AIL+ENSDLLAKR N FIIPFQS QEREKELM S I IEIP +GIFR N Sbjct: 522 TGHCNLIYPAILHENSDLLAKRRINKFIIPFQSTQEREKELMPRSGISIEIPISGIFRRN 581 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 S+FAYFDDPQYRRKS SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 636 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYI PE SS+M Sbjct: 637 FFIPEEVYILPEYSSIM 653 >gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloroplast) [Morella cerifera] Length = 1274 Score = 218 bits (555), Expect = 6e-55 Identities = 110/136 (80%), Positives = 119/136 (87%) Frame = -2 Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231 GHCNLIY AILYENSDLLAKR RN FIIPF S+QEREKELM+ S I IEIP NGIFR NS Sbjct: 521 GHCNLIYPAILYENSDLLAKRRRNRFIIPFHSIQEREKELMSPSGISIEIPVNGIFRKNS 580 Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51 + AYFDDPQYRRK+ SGITKYGTIGVHSI+KKEDLIEYRGV+EFKPKYQMK+DRFF Sbjct: 581 ILAYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVQEFKPKYQMKIDRFF 635 Query: 50 FIPEEVYIFPESSSLM 3 FIPEEV+I PES S+M Sbjct: 636 FIPEEVHILPESCSIM 651 >gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tapiscia sinensis] Length = 1280 Score = 218 bits (554), Expect = 8e-55 Identities = 110/138 (79%), Positives = 119/138 (86%) Frame = -2 Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237 GTGHCNLIY AIL+EN DLLAKR RN FIIPFQS+QE+EKELM S I IEIP NGIFR Sbjct: 519 GTGHCNLIYSAILHENYDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRR 578 Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57 NS+ A+FDDPQYRR S SGITKYGTIG HSIVKKED+IEYRGVK+FKPKYQMKVDR Sbjct: 579 NSILAFFDDPQYRRNS-----SGITKYGTIGAHSIVKKEDVIEYRGVKKFKPKYQMKVDR 633 Query: 56 FFFIPEEVYIFPESSSLM 3 FFFIPEEV+I PESSS+M Sbjct: 634 FFFIPEEVHILPESSSIM 651 >gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus praecox] Length = 1280 Score = 217 bits (552), Expect = 1e-54 Identities = 110/136 (80%), Positives = 118/136 (86%) Frame = -2 Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231 GHCN IY AIL+ENSDLLAKR RN IIPFQS+QE+EKELM+HS I IEIP NGIFR NS Sbjct: 523 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELMSHSGISIEIPINGIFRRNS 582 Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51 + AYFDDP+Y R S SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF Sbjct: 583 ILAYFDDPRYTRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 637 Query: 50 FIPEEVYIFPESSSLM 3 FIPEEV+I PESSS+M Sbjct: 638 FIPEEVHILPESSSIM 653 >gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica] Length = 1390 Score = 216 bits (551), Expect = 2e-54 Identities = 109/136 (80%), Positives = 119/136 (87%) Frame = -2 Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231 GHCN IY AIL+ENSDLLAKR RN IIPFQS+QE+EKEL++HS I IEIP NGIFR NS Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELLSHSGISIEIPINGIFRRNS 613 Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51 + AYFDDP+YRR S SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKY+MKVDRFF Sbjct: 614 ILAYFDDPRYRRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYKMKVDRFF 668 Query: 50 FIPEEVYIFPESSSLM 3 FIPEEV+I PESSS+M Sbjct: 669 FIPEEVHILPESSSIM 684 >gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes icosandra x Ixonanthes cuneata] Length = 1262 Score = 216 bits (550), Expect = 2e-54 Identities = 112/137 (81%), Positives = 117/137 (85%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGHCNLIY AIL+ENSDLLAKR RN FIIPFQS+QE+EKELM S I +EIP NGIF N Sbjct: 520 TGHCNLIYPAILHENSDLLAKRRRNRFIIPFQSIQEQEKELMPCSDISLEIPINGIFHRN 579 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 S+FAYF DPQYRR S SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF Sbjct: 580 SIFAYFGDPQYRRNS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 634 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEVYI PE SSLM Sbjct: 635 FFIPEEVYILPEFSSLM 651 >gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina] Length = 1389 Score = 215 bits (548), Expect = 4e-54 Identities = 111/138 (80%), Positives = 118/138 (85%) Frame = -2 Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237 GT CNLIY AILYENSDLLAKR +N FIIPFQS+QEREKELM S I IEIP NGIFR Sbjct: 552 GTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRR 611 Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57 NS+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDR Sbjct: 612 NSILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDR 666 Query: 56 FFFIPEEVYIFPESSSLM 3 FFFIPEEV+I P SSS+M Sbjct: 667 FFFIPEEVHILPGSSSIM 684 >gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri] Length = 829 Score = 215 bits (548), Expect = 4e-54 Identities = 111/138 (80%), Positives = 118/138 (85%) Frame = -2 Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237 GT CNLIY AILYENSDLLAKR +N FIIPFQS+QEREKELM S I IEIP NGIFR Sbjct: 69 GTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRR 128 Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57 NS+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDR Sbjct: 129 NSILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDR 183 Query: 56 FFFIPEEVYIFPESSSLM 3 FFFIPEEV+I P SSS+M Sbjct: 184 FFFIPEEVHILPGSSSIM 201 >gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloroplast) [Alnus alnobetula subsp. sinuata] Length = 1273 Score = 215 bits (547), Expect = 5e-54 Identities = 110/134 (82%), Positives = 117/134 (87%) Frame = -2 Query: 404 CNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NSVF 225 CNLIY AILYENSDLLAKR RN FIIPFQS+QEREKELM S I IEIP NGIFR NS+ Sbjct: 520 CNLIYPAILYENSDLLAKRRRNRFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKNSIL 579 Query: 224 AYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFI 45 AYFDDPQYRRK+ SGITKYGTIGVHSI+KKEDLIEYRGVKE KPKYQMK+DRFFFI Sbjct: 580 AYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEIKPKYQMKIDRFFFI 634 Query: 44 PEEVYIFPESSSLM 3 PEEV+I PESSS+M Sbjct: 635 PEEVHILPESSSIM 648 >gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloroplast) [Juglans nigra] Length = 1268 Score = 214 bits (545), Expect = 9e-54 Identities = 109/137 (79%), Positives = 119/137 (86%) Frame = -2 Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234 TGH NLIY AILY+N DLLAKR +N FIIPFQS+QEREKELM S I IEIP NGIFR N Sbjct: 519 TGHFNLIYPAILYKNYDLLAKRQKNXFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKN 578 Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54 S+ AYFDDPQYR+K+ SGITKYGTIGVHSI+KKEDLIEYRGVKEFKPKYQMK+DRF Sbjct: 579 SILAYFDDPQYRKKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEFKPKYQMKIDRF 633 Query: 53 FFIPEEVYIFPESSSLM 3 FFIPEEV+I PESSS+M Sbjct: 634 FFIPEEVHILPESSSIM 650 >ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia utilis] gi|501418813|gb|AGL94690.1| RNA polymerase beta' subunit [Prinsepia utilis] Length = 1384 Score = 213 bits (541), Expect = 3e-53 Identities = 109/139 (78%), Positives = 120/139 (86%), Gaps = 2/139 (1%) Frame = -2 Query: 413 TGHCNLIYCAILYENSD--LLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR 240 TGHCNL + AIL +NSD LL KR RN FIIPFQS+QEREKELMT +I IEIP+NGIFR Sbjct: 549 TGHCNLKFPAILRDNSDFFLLTKRRRNRFIIPFQSIQEREKELMTRPSISIEIPKNGIFR 608 Query: 239 *NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVD 60 NS+ AYFDDPQYRRKSSGITK YGT+G+HSI+KKEDLIEYRGVKEFKPKYQMKVD Sbjct: 609 RNSILAYFDDPQYRRKSSGITK-----YGTVGLHSILKKEDLIEYRGVKEFKPKYQMKVD 663 Query: 59 RFFFIPEEVYIFPESSSLM 3 RFFFIPEEV+I PESSS+M Sbjct: 664 RFFFIPEEVHILPESSSIM 682 >ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense] gi|479279193|gb|AGJ72047.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense] Length = 1378 Score = 213 bits (541), Expect = 3e-53 Identities = 110/136 (80%), Positives = 115/136 (84%) Frame = -2 Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231 GHCN IY AIL+ENSDLLAKR RN FIIPFQS QEREKELM S I IEIP NGIFR NS Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613 Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51 + AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668 Query: 50 FIPEEVYIFPESSSLM 3 FIPEEVYI P SSS+M Sbjct: 669 FIPEEVYILPGSSSIM 684 >ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides] gi|479279286|gb|AGJ72139.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides] Length = 1381 Score = 213 bits (541), Expect = 3e-53 Identities = 110/136 (80%), Positives = 115/136 (84%) Frame = -2 Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231 GHCN IY AIL+ENSDLLAKR RN FIIPFQS QEREKELM S I IEIP NGIFR NS Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613 Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51 + AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668 Query: 50 FIPEEVYIFPESSSLM 3 FIPEEVYI P SSS+M Sbjct: 669 FIPEEVYILPGSSSIM 684