BLASTX nr result

ID: Jatropha_contig00044123 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00044123
         (435 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7...   262   4e-68
ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili...   230   2e-58
ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul...   229   2e-58
gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla...   229   2e-58
ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus co...   228   6e-58
gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloropla...   223   1e-56
gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. s...   222   3e-56
gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla...   222   4e-56
gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloropla...   218   6e-55
gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloropla...   218   8e-55
gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloropla...   217   1e-54
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap...   216   2e-54
gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloropla...   216   2e-54
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb...   215   4e-54
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]     215   4e-54
gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloropla...   215   5e-54
gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloropla...   214   9e-54
ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia util...   213   3e-53
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ...   213   3e-53
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ...   213   3e-53

>ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha
           curcas]
          Length = 1394

 Score =  262 bits (669), Expect = 4e-68
 Identities = 131/137 (95%), Positives = 132/137 (96%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY AILYENSDLLAKR RN FIIPFQS+QEREKELMTHSAI IEIPRNGIFR N
Sbjct: 553 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 612

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 613 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 672

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYIFPESSSLM
Sbjct: 673 FFIPEEVYIFPESSSLM 689


>ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
           gi|308523496|gb|ADO33546.1| RNA polymerase beta''
           subunit [Hevea brasiliensis]
          Length = 1395

 Score =  230 bits (586), Expect = 2e-58
 Identities = 119/137 (86%), Positives = 120/137 (87%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY  ILYENSDLLAKR RN FIIPFQS+QEREKELMTHSAI IEIP NGIFR N
Sbjct: 553 TGHCNLIYPTILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPINGIFRRN 612

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           SVF YFDDPQYRRKS     SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVD F
Sbjct: 613 SVFVYFDDPQYRRKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDCF 667

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYI PESSSLM
Sbjct: 668 FFIPEEVYILPESSSLM 684


>ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
           gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|157695875|gb|ABV66144.1| RNA polymerase beta
           subunit [Manihot esculenta]
          Length = 1393

 Score =  229 bits (585), Expect = 2e-58
 Identities = 118/137 (86%), Positives = 121/137 (88%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY  ILY+NSDLLAKR RN FIIPFQS+QEREKELMT SAI IEIP NGIFR N
Sbjct: 553 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 612

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           SVFAYFDDPQYR+KS     SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF
Sbjct: 613 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 667

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYI PESSSLM
Sbjct: 668 FFIPEEVYILPESSSLM 684


>gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
           esculenta]
          Length = 1281

 Score =  229 bits (585), Expect = 2e-58
 Identities = 118/137 (86%), Positives = 121/137 (88%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY  ILY+NSDLLAKR RN FIIPFQS+QEREKELMT SAI IEIP NGIFR N
Sbjct: 523 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 582

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           SVFAYFDDPQYR+KS     SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF
Sbjct: 583 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 637

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYI PESSSLM
Sbjct: 638 FFIPEEVYILPESSSLM 654


>ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis]
           gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit
           [Ricinus communis]
          Length = 1405

 Score =  228 bits (581), Expect = 6e-58
 Identities = 120/138 (86%), Positives = 123/138 (89%), Gaps = 1/138 (0%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHS-AI*IEIPRNGIFR* 237
           TGHCNLIY AILYENSDLLAKR RN FIIPFQS+QE+EK+LMT S AI IEIP NGIFR 
Sbjct: 556 TGHCNLIYPAILYENSDLLAKRRRNKFIIPFQSIQEQEKKLMTRSSAISIEIPLNGIFRR 615

Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
           NSVFAYFDDPQYRRKSSGITK     YG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR
Sbjct: 616 NSVFAYFDDPQYRRKSSGITK-----YGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 670

Query: 56  FFFIPEEVYIFPESSSLM 3
           FFFIPEEVYI PESSSLM
Sbjct: 671 FFFIPEEVYILPESSSLM 688


>gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloroplast) [Connarus
           conchocarpus]
          Length = 1277

 Score =  223 bits (569), Expect = 1e-56
 Identities = 115/137 (83%), Positives = 122/137 (89%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLI  AIL+ENSDL+AKR RN FIIPFQS+QEREKELM  S I IEIP +GIFR N
Sbjct: 522 TGHCNLIDPAILHENSDLVAKRRRNKFIIPFQSIQEREKELMPRSDISIEIPISGIFRRN 581

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           S+FAYFDDPQYRRKS     SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQ+KVDRF
Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQIKVDRF 636

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYIFPESSS+M
Sbjct: 637 FFIPEEVYIFPESSSIM 653


>gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens]
          Length = 814

 Score =  222 bits (566), Expect = 3e-56
 Identities = 114/137 (83%), Positives = 120/137 (87%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY  ILYENSDLLAKR RN FIIPFQS+QEREKE MT+S I IEIP NGIFR N
Sbjct: 79  TGHCNLIYPPILYENSDLLAKRRRNKFIIPFQSIQEREKEQMTYSTISIEIPINGIFRRN 138

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           SVF+YFDDPQY+RKS     SGITKYG IGVHSIVKKEDLI Y+GVKEFKPKYQM+VDRF
Sbjct: 139 SVFSYFDDPQYQRKS-----SGITKYGAIGVHSIVKKEDLIAYQGVKEFKPKYQMQVDRF 193

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYI PESSSLM
Sbjct: 194 FFIPEEVYILPESSSLM 210


>gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
           lucida]
          Length = 1280

 Score =  222 bits (565), Expect = 4e-56
 Identities = 115/137 (83%), Positives = 119/137 (86%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY AIL+ENSDLLAKR  N FIIPFQS QEREKELM  S I IEIP +GIFR N
Sbjct: 522 TGHCNLIYPAILHENSDLLAKRRINKFIIPFQSTQEREKELMPRSGISIEIPISGIFRRN 581

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           S+FAYFDDPQYRRKS     SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 636

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYI PE SS+M
Sbjct: 637 FFIPEEVYILPEYSSIM 653


>gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloroplast) [Morella
           cerifera]
          Length = 1274

 Score =  218 bits (555), Expect = 6e-55
 Identities = 110/136 (80%), Positives = 119/136 (87%)
 Frame = -2

Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
           GHCNLIY AILYENSDLLAKR RN FIIPF S+QEREKELM+ S I IEIP NGIFR NS
Sbjct: 521 GHCNLIYPAILYENSDLLAKRRRNRFIIPFHSIQEREKELMSPSGISIEIPVNGIFRKNS 580

Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
           + AYFDDPQYRRK+     SGITKYGTIGVHSI+KKEDLIEYRGV+EFKPKYQMK+DRFF
Sbjct: 581 ILAYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVQEFKPKYQMKIDRFF 635

Query: 50  FIPEEVYIFPESSSLM 3
           FIPEEV+I PES S+M
Sbjct: 636 FIPEEVHILPESCSIM 651


>gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tapiscia
           sinensis]
          Length = 1280

 Score =  218 bits (554), Expect = 8e-55
 Identities = 110/138 (79%), Positives = 119/138 (86%)
 Frame = -2

Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237
           GTGHCNLIY AIL+EN DLLAKR RN FIIPFQS+QE+EKELM  S I IEIP NGIFR 
Sbjct: 519 GTGHCNLIYSAILHENYDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRR 578

Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
           NS+ A+FDDPQYRR S     SGITKYGTIG HSIVKKED+IEYRGVK+FKPKYQMKVDR
Sbjct: 579 NSILAFFDDPQYRRNS-----SGITKYGTIGAHSIVKKEDVIEYRGVKKFKPKYQMKVDR 633

Query: 56  FFFIPEEVYIFPESSSLM 3
           FFFIPEEV+I PESSS+M
Sbjct: 634 FFFIPEEVHILPESSSIM 651


>gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus
           praecox]
          Length = 1280

 Score =  217 bits (552), Expect = 1e-54
 Identities = 110/136 (80%), Positives = 118/136 (86%)
 Frame = -2

Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
           GHCN IY AIL+ENSDLLAKR RN  IIPFQS+QE+EKELM+HS I IEIP NGIFR NS
Sbjct: 523 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELMSHSGISIEIPINGIFRRNS 582

Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
           + AYFDDP+Y R S     SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF
Sbjct: 583 ILAYFDDPRYTRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 637

Query: 50  FIPEEVYIFPESSSLM 3
           FIPEEV+I PESSS+M
Sbjct: 638 FIPEEVHILPESSSIM 653


>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
          Length = 1390

 Score =  216 bits (551), Expect = 2e-54
 Identities = 109/136 (80%), Positives = 119/136 (87%)
 Frame = -2

Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
           GHCN IY AIL+ENSDLLAKR RN  IIPFQS+QE+EKEL++HS I IEIP NGIFR NS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELLSHSGISIEIPINGIFRRNS 613

Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
           + AYFDDP+YRR S     SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKY+MKVDRFF
Sbjct: 614 ILAYFDDPRYRRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYKMKVDRFF 668

Query: 50  FIPEEVYIFPESSSLM 3
           FIPEEV+I PESSS+M
Sbjct: 669 FIPEEVHILPESSSIM 684


>gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes
           icosandra x Ixonanthes cuneata]
          Length = 1262

 Score =  216 bits (550), Expect = 2e-54
 Identities = 112/137 (81%), Positives = 117/137 (85%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGHCNLIY AIL+ENSDLLAKR RN FIIPFQS+QE+EKELM  S I +EIP NGIF  N
Sbjct: 520 TGHCNLIYPAILHENSDLLAKRRRNRFIIPFQSIQEQEKELMPCSDISLEIPINGIFHRN 579

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           S+FAYF DPQYRR S     SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 580 SIFAYFGDPQYRRNS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 634

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEVYI PE SSLM
Sbjct: 635 FFIPEEVYILPEFSSLM 651


>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis
           corallina]
          Length = 1389

 Score =  215 bits (548), Expect = 4e-54
 Identities = 111/138 (80%), Positives = 118/138 (85%)
 Frame = -2

Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237
           GT  CNLIY AILYENSDLLAKR +N FIIPFQS+QEREKELM  S I IEIP NGIFR 
Sbjct: 552 GTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRR 611

Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
           NS+ AYFDDP+YRRKS     SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDR
Sbjct: 612 NSILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDR 666

Query: 56  FFFIPEEVYIFPESSSLM 3
           FFFIPEEV+I P SSS+M
Sbjct: 667 FFFIPEEVHILPGSSSIM 684


>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
          Length = 829

 Score =  215 bits (548), Expect = 4e-54
 Identities = 111/138 (80%), Positives = 118/138 (85%)
 Frame = -2

Query: 416 GTGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR* 237
           GT  CNLIY AILYENSDLLAKR +N FIIPFQS+QEREKELM  S I IEIP NGIFR 
Sbjct: 69  GTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRR 128

Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
           NS+ AYFDDP+YRRKS     SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDR
Sbjct: 129 NSILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDR 183

Query: 56  FFFIPEEVYIFPESSSLM 3
           FFFIPEEV+I P SSS+M
Sbjct: 184 FFFIPEEVHILPGSSSIM 201


>gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloroplast) [Alnus
           alnobetula subsp. sinuata]
          Length = 1273

 Score =  215 bits (547), Expect = 5e-54
 Identities = 110/134 (82%), Positives = 117/134 (87%)
 Frame = -2

Query: 404 CNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NSVF 225
           CNLIY AILYENSDLLAKR RN FIIPFQS+QEREKELM  S I IEIP NGIFR NS+ 
Sbjct: 520 CNLIYPAILYENSDLLAKRRRNRFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKNSIL 579

Query: 224 AYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFI 45
           AYFDDPQYRRK+     SGITKYGTIGVHSI+KKEDLIEYRGVKE KPKYQMK+DRFFFI
Sbjct: 580 AYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEIKPKYQMKIDRFFFI 634

Query: 44  PEEVYIFPESSSLM 3
           PEEV+I PESSS+M
Sbjct: 635 PEEVHILPESSSIM 648


>gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloroplast) [Juglans
           nigra]
          Length = 1268

 Score =  214 bits (545), Expect = 9e-54
 Identities = 109/137 (79%), Positives = 119/137 (86%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*N 234
           TGH NLIY AILY+N DLLAKR +N FIIPFQS+QEREKELM  S I IEIP NGIFR N
Sbjct: 519 TGHFNLIYPAILYKNYDLLAKRQKNXFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKN 578

Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
           S+ AYFDDPQYR+K+     SGITKYGTIGVHSI+KKEDLIEYRGVKEFKPKYQMK+DRF
Sbjct: 579 SILAYFDDPQYRKKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEFKPKYQMKIDRF 633

Query: 53  FFIPEEVYIFPESSSLM 3
           FFIPEEV+I PESSS+M
Sbjct: 634 FFIPEEVHILPESSSIM 650


>ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia utilis]
           gi|501418813|gb|AGL94690.1| RNA polymerase beta' subunit
           [Prinsepia utilis]
          Length = 1384

 Score =  213 bits (541), Expect = 3e-53
 Identities = 109/139 (78%), Positives = 120/139 (86%), Gaps = 2/139 (1%)
 Frame = -2

Query: 413 TGHCNLIYCAILYENSD--LLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR 240
           TGHCNL + AIL +NSD  LL KR RN FIIPFQS+QEREKELMT  +I IEIP+NGIFR
Sbjct: 549 TGHCNLKFPAILRDNSDFFLLTKRRRNRFIIPFQSIQEREKELMTRPSISIEIPKNGIFR 608

Query: 239 *NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVD 60
            NS+ AYFDDPQYRRKSSGITK     YGT+G+HSI+KKEDLIEYRGVKEFKPKYQMKVD
Sbjct: 609 RNSILAYFDDPQYRRKSSGITK-----YGTVGLHSILKKEDLIEYRGVKEFKPKYQMKVD 663

Query: 59  RFFFIPEEVYIFPESSSLM 3
           RFFFIPEEV+I PESSS+M
Sbjct: 664 RFFFIPEEVHILPESSSIM 682


>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
           gi|479279193|gb|AGJ72047.1| RNA polymerase beta''
           subunit (chloroplast) [Tetracentron sinense]
          Length = 1378

 Score =  213 bits (541), Expect = 3e-53
 Identities = 110/136 (80%), Positives = 115/136 (84%)
 Frame = -2

Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
           GHCN IY AIL+ENSDLLAKR RN FIIPFQS QEREKELM  S I IEIP NGIFR NS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613

Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
           + AYFDDP+YRRKS     SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF
Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668

Query: 50  FIPEEVYIFPESSSLM 3
           FIPEEVYI P SSS+M
Sbjct: 669 FIPEEVYILPGSSSIM 684


>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
           aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
           beta'' subunit (chloroplast) [Trochodendron aralioides]
           gi|479279286|gb|AGJ72139.1| RNA polymerase beta''
           subunit (chloroplast) [Trochodendron aralioides]
          Length = 1381

 Score =  213 bits (541), Expect = 3e-53
 Identities = 110/136 (80%), Positives = 115/136 (84%)
 Frame = -2

Query: 410 GHCNLIYCAILYENSDLLAKRCRNTFIIPFQSLQEREKELMTHSAI*IEIPRNGIFR*NS 231
           GHCN IY AIL+ENSDLLAKR RN FIIPFQS QEREKELM  S I IEIP NGIFR NS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613

Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
           + AYFDDP+YRRKS     SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF
Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668

Query: 50  FIPEEVYIFPESSSLM 3
           FIPEEVYI P SSS+M
Sbjct: 669 FIPEEVYILPGSSSIM 684


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