BLASTX nr result
ID: Jatropha_contig00044077
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00044077
(413 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7... 276 1e-72
ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul... 244 8e-63
gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla... 244 8e-63
ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili... 243 1e-62
ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus co... 241 5e-62
gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloropla... 237 1e-60
gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. s... 236 3e-60
gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla... 234 6e-60
gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloropla... 229 3e-58
gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloropla... 229 3e-58
gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloropla... 229 3e-58
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap... 229 3e-58
gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloropla... 228 5e-58
gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloropla... 226 2e-57
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 225 4e-57
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri] 225 4e-57
ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia util... 225 5e-57
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ... 224 9e-57
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ... 224 9e-57
gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloropla... 224 9e-57
>ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha
curcas]
Length = 1394
Score = 276 bits (707), Expect = 1e-72
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN
Sbjct: 553 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 613 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 672
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYIFPESSSLM
Sbjct: 673 FFIPEEVYIFPESSSLM 689
>ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|157695875|gb|ABV66144.1| RNA polymerase beta
subunit [Manihot esculenta]
Length = 1393
Score = 244 bits (623), Expect = 8e-63
Identities = 124/137 (90%), Positives = 126/137 (91%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIYS ILY+NSDLLAKRRRNKFIIPFQSIQEREKELMT SAISIEIP NGIFRRN
Sbjct: 553 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVFAYFDDPQYR+KS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF
Sbjct: 613 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 667
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 668 FFIPEEVYILPESSSLM 684
>gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
esculenta]
Length = 1281
Score = 244 bits (623), Expect = 8e-63
Identities = 124/137 (90%), Positives = 126/137 (91%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIYS ILY+NSDLLAKRRRNKFIIPFQSIQEREKELMT SAISIEIP NGIFRRN
Sbjct: 523 TGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRN 582
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVFAYFDDPQYR+KS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVDRF
Sbjct: 583 SVFAYFDDPQYRKKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRF 637
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 638 FFIPEEVYILPESSSLM 654
>ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
gi|308523496|gb|ADO33546.1| RNA polymerase beta''
subunit [Hevea brasiliensis]
Length = 1395
Score = 243 bits (621), Expect = 1e-62
Identities = 124/137 (90%), Positives = 124/137 (90%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIY ILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIP NGIFRRN
Sbjct: 553 TGHCNLIYPTILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPINGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVF YFDDPQYRRKS SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQ KVD F
Sbjct: 613 SVFVYFDDPQYRRKS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDCF 667
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 668 FFIPEEVYILPESSSLM 684
>ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis]
gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 1405
Score = 241 bits (616), Expect = 5e-62
Identities = 125/138 (90%), Positives = 127/138 (92%), Gaps = 1/138 (0%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHS-AISIEIPRNGIFRR 237
TGHCNLIY AILYENSDLLAKRRRNKFIIPFQSIQE+EK+LMT S AISIEIP NGIFRR
Sbjct: 556 TGHCNLIYPAILYENSDLLAKRRRNKFIIPFQSIQEQEKKLMTRSSAISIEIPLNGIFRR 615
Query: 236 NSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 57
NSVFAYFDDPQYRRKSSGITK YG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR
Sbjct: 616 NSVFAYFDDPQYRRKSSGITK-----YGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDR 670
Query: 56 FFFIPEEVYIFPESSSLM 3
FFFIPEEVYI PESSSLM
Sbjct: 671 FFFIPEEVYILPESSSLM 688
>gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloroplast) [Connarus
conchocarpus]
Length = 1277
Score = 237 bits (604), Expect = 1e-60
Identities = 120/137 (87%), Positives = 126/137 (91%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLI AIL+ENSDL+AKRRRNKFIIPFQSIQEREKELM S ISIEIP +GIFRRN
Sbjct: 522 TGHCNLIDPAILHENSDLVAKRRRNKFIIPFQSIQEREKELMPRSDISIEIPISGIFRRN 581
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYFDDPQYRRKS SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQ+KVDRF
Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQIKVDRF 636
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYIFPESSS+M
Sbjct: 637 FFIPEEVYIFPESSSIM 653
>gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens]
Length = 814
Score = 236 bits (601), Expect = 3e-60
Identities = 119/137 (86%), Positives = 124/137 (90%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIY ILYENSDLLAKRRRNKFIIPFQSIQEREKE MT+S ISIEIP NGIFRRN
Sbjct: 79 TGHCNLIYPPILYENSDLLAKRRRNKFIIPFQSIQEREKEQMTYSTISIEIPINGIFRRN 138
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
SVF+YFDDPQY+RKS SGITKYG IGVHSIVKKEDLI Y+GVKEFKPKYQM+VDRF
Sbjct: 139 SVFSYFDDPQYQRKS-----SGITKYGAIGVHSIVKKEDLIAYQGVKEFKPKYQMQVDRF 193
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PESSSLM
Sbjct: 194 FFIPEEVYILPESSSLM 210
>gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
lucida]
Length = 1280
Score = 234 bits (598), Expect = 6e-60
Identities = 119/137 (86%), Positives = 123/137 (89%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIY AIL+ENSDLLAKRR NKFIIPFQS QEREKELM S ISIEIP +GIFRRN
Sbjct: 522 TGHCNLIYPAILHENSDLLAKRRINKFIIPFQSTQEREKELMPRSGISIEIPISGIFRRN 581
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYFDDPQYRRKS SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 582 SIFAYFDDPQYRRKS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 636
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PE SS+M
Sbjct: 637 FFIPEEVYILPEYSSIM 653
>gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus
praecox]
Length = 1280
Score = 229 bits (584), Expect = 3e-58
Identities = 114/136 (83%), Positives = 122/136 (89%)
Frame = -1
Query: 410 GHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRNS 231
GHCN IY AIL+ENSDLLAKRRRN+ IIPFQSIQE+EKELM+HS ISIEIP NGIFRRNS
Sbjct: 523 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELMSHSGISIEIPINGIFRRNS 582
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+Y R S SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF
Sbjct: 583 ILAYFDDPRYTRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 637
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEV+I PESSS+M
Sbjct: 638 FIPEEVHILPESSSIM 653
>gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloroplast) [Morella
cerifera]
Length = 1274
Score = 229 bits (584), Expect = 3e-58
Identities = 113/136 (83%), Positives = 123/136 (90%)
Frame = -1
Query: 410 GHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRNS 231
GHCNLIY AILYENSDLLAKRRRN+FIIPF SIQEREKELM+ S ISIEIP NGIFR+NS
Sbjct: 521 GHCNLIYPAILYENSDLLAKRRRNRFIIPFHSIQEREKELMSPSGISIEIPVNGIFRKNS 580
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDPQYRRK+ SGITKYGTIGVHSI+KKEDLIEYRGV+EFKPKYQMK+DRFF
Sbjct: 581 ILAYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVQEFKPKYQMKIDRFF 635
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEV+I PES S+M
Sbjct: 636 FIPEEVHILPESCSIM 651
>gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tapiscia
sinensis]
Length = 1280
Score = 229 bits (583), Expect = 3e-58
Identities = 114/137 (83%), Positives = 123/137 (89%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIYSAIL+EN DLLAKRRRN+FIIPFQSIQE+EKELM S ISIEIP NGIFRRN
Sbjct: 520 TGHCNLIYSAILHENYDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRRN 579
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+ A+FDDPQYRR S SGITKYGTIG HSIVKKED+IEYRGVK+FKPKYQMKVDRF
Sbjct: 580 SILAFFDDPQYRRNS-----SGITKYGTIGAHSIVKKEDVIEYRGVKKFKPKYQMKVDRF 634
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEV+I PESSS+M
Sbjct: 635 FFIPEEVHILPESSSIM 651
>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
Length = 1390
Score = 229 bits (583), Expect = 3e-58
Identities = 113/136 (83%), Positives = 123/136 (90%)
Frame = -1
Query: 410 GHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRNS 231
GHCN IY AIL+ENSDLLAKRRRN+ IIPFQSIQE+EKEL++HS ISIEIP NGIFRRNS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRLIIPFQSIQEQEKELLSHSGISIEIPINGIFRRNS 613
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+YRR S SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKY+MKVDRFF
Sbjct: 614 ILAYFDDPRYRRNS-----SGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYKMKVDRFF 668
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEV+I PESSS+M
Sbjct: 669 FIPEEVHILPESSSIM 684
>gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes
icosandra x Ixonanthes cuneata]
Length = 1262
Score = 228 bits (582), Expect = 5e-58
Identities = 116/137 (84%), Positives = 121/137 (88%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIY AIL+ENSDLLAKRRRN+FIIPFQSIQE+EKELM S IS+EIP NGIF RN
Sbjct: 520 TGHCNLIYPAILHENSDLLAKRRRNRFIIPFQSIQEQEKELMPCSDISLEIPINGIFHRN 579
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYF DPQYRR S SGITKYG IGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF
Sbjct: 580 SIFAYFGDPQYRRNS-----SGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 634
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEVYI PE SSLM
Sbjct: 635 FFIPEEVYILPEFSSLM 651
>gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloroplast) [Alnus
alnobetula subsp. sinuata]
Length = 1273
Score = 226 bits (576), Expect = 2e-57
Identities = 113/134 (84%), Positives = 121/134 (90%)
Frame = -1
Query: 404 CNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRNSVF 225
CNLIY AILYENSDLLAKRRRN+FIIPFQSIQEREKELM S ISIEIP NGIFR+NS+
Sbjct: 520 CNLIYPAILYENSDLLAKRRRNRFIIPFQSIQEREKELMPPSGISIEIPVNGIFRKNSIL 579
Query: 224 AYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFI 45
AYFDDPQYRRK+ SGITKYGTIGVHSI+KKEDLIEYRGVKE KPKYQMK+DRFFFI
Sbjct: 580 AYFDDPQYRRKN-----SGITKYGTIGVHSILKKEDLIEYRGVKEIKPKYQMKIDRFFFI 634
Query: 44 PEEVYIFPESSSLM 3
PEEV+I PESSS+M
Sbjct: 635 PEEVHILPESSSIM 648
>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis
corallina]
Length = 1389
Score = 225 bits (574), Expect = 4e-57
Identities = 114/137 (83%), Positives = 121/137 (88%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
T CNLIY AILYENSDLLAKRR+N+FIIPFQSIQEREKELM S ISIEIP NGIFRRN
Sbjct: 553 TSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRRN 612
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDRF
Sbjct: 613 SILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRF 667
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEV+I P SSS+M
Sbjct: 668 FFIPEEVHILPGSSSIM 684
>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
Length = 829
Score = 225 bits (574), Expect = 4e-57
Identities = 114/137 (83%), Positives = 121/137 (88%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
T CNLIY AILYENSDLLAKRR+N+FIIPFQSIQEREKELM S ISIEIP NGIFRRN
Sbjct: 70 TSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRRN 129
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRGVKEF+PKYQMKVDRF
Sbjct: 130 SILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRF 184
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEV+I P SSS+M
Sbjct: 185 FFIPEEVHILPGSSSIM 201
>ref|YP_008082723.1| RNA polymerase beta' subunit [Prinsepia utilis]
gi|501418813|gb|AGL94690.1| RNA polymerase beta' subunit
[Prinsepia utilis]
Length = 1384
Score = 225 bits (573), Expect = 5e-57
Identities = 113/139 (81%), Positives = 124/139 (89%), Gaps = 2/139 (1%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSD--LLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFR 240
TGHCNL + AIL +NSD LL KRRRN+FIIPFQSIQEREKELMT +ISIEIP+NGIFR
Sbjct: 549 TGHCNLKFPAILRDNSDFFLLTKRRRNRFIIPFQSIQEREKELMTRPSISIEIPKNGIFR 608
Query: 239 RNSVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVD 60
RNS+ AYFDDPQYRRKS SGITKYGT+G+HSI+KKEDLIEYRGVKEFKPKYQMKVD
Sbjct: 609 RNSILAYFDDPQYRRKS-----SGITKYGTVGLHSILKKEDLIEYRGVKEFKPKYQMKVD 663
Query: 59 RFFFIPEEVYIFPESSSLM 3
RFFFIPEEV+I PESSS+M
Sbjct: 664 RFFFIPEEVHILPESSSIM 682
>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
gi|479279193|gb|AGJ72047.1| RNA polymerase beta''
subunit (chloroplast) [Tetracentron sinense]
Length = 1378
Score = 224 bits (571), Expect = 9e-57
Identities = 113/136 (83%), Positives = 119/136 (87%)
Frame = -1
Query: 410 GHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRNS 231
GHCN IY AIL+ENSDLLAKRRRN+FIIPFQS QEREKELM S ISIEIP NGIFRRNS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF
Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEVYI P SSS+M
Sbjct: 669 FIPEEVYILPGSSSIM 684
>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
beta'' subunit (chloroplast) [Trochodendron aralioides]
gi|479279286|gb|AGJ72139.1| RNA polymerase beta''
subunit (chloroplast) [Trochodendron aralioides]
Length = 1381
Score = 224 bits (571), Expect = 9e-57
Identities = 113/136 (83%), Positives = 119/136 (87%)
Frame = -1
Query: 410 GHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRNS 231
GHCN IY AIL+ENSDLLAKRRRN+FIIPFQS QEREKELM S ISIEIP NGIFRRNS
Sbjct: 554 GHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNS 613
Query: 230 VFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRFF 51
+ AYFDDP+YRRKS SGITKYGTI VHSIVKKEDLIEYRG KEF+PKYQMKVDRFF
Sbjct: 614 ILAYFDDPRYRRKS-----SGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFF 668
Query: 50 FIPEEVYIFPESSSLM 3
FIPEEVYI P SSS+M
Sbjct: 669 FIPEEVYILPGSSSIM 684
>gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ochna
mossambicensis]
Length = 1268
Score = 224 bits (571), Expect = 9e-57
Identities = 113/137 (82%), Positives = 120/137 (87%)
Frame = -1
Query: 413 TGHCNLIYSAILYENSDLLAKRRRNKFIIPFQSIQEREKELMTHSAISIEIPRNGIFRRN 234
TGHCNLIY AI +ENSDLLAKRRRN+FIIPFQSIQER KELM+HS ISIEIP NGIFRRN
Sbjct: 519 TGHCNLIYPAIPHENSDLLAKRRRNRFIIPFQSIQERAKELMSHSGISIEIPINGIFRRN 578
Query: 233 SVFAYFDDPQYRRKSSGITKSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYQMKVDRF 54
S+FAYFDDPQYRR+S SGITKYG IG HSIVKKEDL+EY VKEFKPKYQMKVD F
Sbjct: 579 SIFAYFDDPQYRRRS-----SGITKYGGIGAHSIVKKEDLVEYGRVKEFKPKYQMKVDHF 633
Query: 53 FFIPEEVYIFPESSSLM 3
FFIPEEV+IF E SSLM
Sbjct: 634 FFIPEEVFIFSEFSSLM 650