BLASTX nr result
ID: Jatropha_contig00043067
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00043067
(768 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEH95632.1| RNA polymerase II second largest subunit, partial... 207 2e-51
gb|AEH95639.1| RNA polymerase II second largest subunit, partial... 207 4e-51
gb|ADZ31148.1| RNA polymerase II second largest subunit, partial... 206 9e-51
gb|AEH95646.1| RNA polymerase II second largest subunit, partial... 206 9e-51
gb|AEH95637.1| RNA polymerase II second largest subunit, partial... 206 9e-51
gb|AEH95636.1| RNA polymerase II second largest subunit, partial... 206 9e-51
gb|AEH95634.1| RNA polymerase II second largest subunit, partial... 206 9e-51
gb|AEH95631.1| RNA polymerase II second largest subunit, partial... 206 9e-51
emb|CAR63495.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63492.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63489.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63488.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63487.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63486.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63485.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63481.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63475.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63474.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
emb|CAR63473.1| RNA polymerase II second largest subunit [Cladon... 206 9e-51
gb|ABM81524.1| RNA polymerase II second largest subunit [Cladoni... 206 9e-51
>gb|AEH95632.1| RNA polymerase II second largest subunit, partial [Cladonia
subulata]
Length = 305
Score = 207 bits (528), Expect = 2e-51
Identities = 117/182 (64%), Positives = 127/182 (69%), Gaps = 5/182 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 123 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 178
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 179 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 238
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 239 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 298
Query: 722 FK 727
K
Sbjct: 299 LK 300
>gb|AEH95639.1| RNA polymerase II second largest subunit, partial [Cladonia
subulata]
Length = 302
Score = 207 bits (526), Expect = 4e-51
Identities = 117/182 (64%), Positives = 127/182 (69%), Gaps = 5/182 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 125 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 180
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 181 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 240
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 241 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 300
Query: 722 FK 727
K
Sbjct: 301 SK 302
>gb|ADZ31148.1| RNA polymerase II second largest subunit, partial [Cladonia
subturgida]
Length = 297
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 122 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 177
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 178 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 237
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 238 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 297
>gb|AEH95646.1| RNA polymerase II second largest subunit, partial [Cladonia
convoluta]
Length = 334
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 155 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 210
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 211 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 270
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 271 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 330
>gb|AEH95637.1| RNA polymerase II second largest subunit, partial [Cladonia
subulata]
Length = 301
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 125 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 180
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 181 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 240
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 241 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 300
>gb|AEH95636.1| RNA polymerase II second largest subunit, partial [Cladonia
subulata]
Length = 300
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 123 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 178
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 179 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 238
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 239 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCKI 298
>gb|AEH95634.1| RNA polymerase II second largest subunit, partial [Cladonia
subulata]
Length = 298
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 123 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 178
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 179 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 238
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 239 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 298
>gb|AEH95631.1| RNA polymerase II second largest subunit, partial [Cladonia
subulata]
Length = 305
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 125 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 180
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 181 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 240
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 241 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 300
>emb|CAR63495.1| RNA polymerase II second largest subunit [Cladonia convoluta]
Length = 343
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 151 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 206
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 207 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 266
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 267 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 326
>emb|CAR63492.1| RNA polymerase II second largest subunit [Cladonia convoluta]
Length = 345
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 139 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 194
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 195 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 254
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 255 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 314
>emb|CAR63489.1| RNA polymerase II second largest subunit [Cladonia pulvinata]
Length = 345
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 139 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 194
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 195 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 254
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 255 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 314
>emb|CAR63488.1| RNA polymerase II second largest subunit [Cladonia pulvinata]
Length = 359
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 151 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 206
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 207 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 266
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 267 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 326
>emb|CAR63487.1| RNA polymerase II second largest subunit [Cladonia pulvinata]
Length = 365
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 159 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 214
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 215 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 274
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 275 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 334
>emb|CAR63486.1| RNA polymerase II second largest subunit [Cladonia pulvinata]
Length = 357
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 151 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 206
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 207 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 266
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 267 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 326
>emb|CAR63485.1| RNA polymerase II second largest subunit [Cladonia cervicornis]
Length = 242
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 41 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 96
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 97 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 156
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 157 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 216
>emb|CAR63481.1| RNA polymerase II second largest subunit [Cladonia convoluta]
Length = 361
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 152 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 207
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 208 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 267
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 268 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 327
>emb|CAR63475.1| RNA polymerase II second largest subunit [Cladonia firma]
gi|317415785|emb|CAR63483.1| RNA polymerase II second
largest subunit [Cladonia firma]
gi|317415787|emb|CAR63484.1| RNA polymerase II second
largest subunit [Cladonia firma]
Length = 345
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 139 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 194
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 195 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 254
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 255 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 314
>emb|CAR63474.1| RNA polymerase II second largest subunit [Cladonia convoluta]
Length = 345
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 139 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 194
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 195 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 254
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 255 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 314
>emb|CAR63473.1| RNA polymerase II second largest subunit [Cladonia foliacea]
Length = 330
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 139 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 194
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 195 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 254
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 255 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 314
>gb|ABM81524.1| RNA polymerase II second largest subunit [Cladonia stipitata]
Length = 391
Score = 206 bits (523), Expect = 9e-51
Identities = 116/180 (64%), Positives = 126/180 (70%), Gaps = 5/180 (2%)
Frame = +2
Query: 197 VNLVWVGVPRDPAHLVSTVQNLRRKG*-----SLTKSA*FTNS*S*VQIFTDAGRVCRPL 361
VN VWVGV RDPAHLVSTVQNLRRKG SL + +IFTDAGRVCRPL
Sbjct: 180 VNGVWVGVHRDPAHLVSTVQNLRRKGMISHEVSLIRDIRDRE----FKIFTDAGRVCRPL 235
Query: 362 FDIENNPASPNRGNLVFTKQMREQLERDKQDLAARAAGGDSDDMDKAKLGWYRLIYNGVV 541
F IENNPASPNRGNLV TKQM EQLE+DKQDLAARAAGGDSDDMDKAKLGWYRLI NGVV
Sbjct: 236 FVIENNPASPNRGNLVLTKQMLEQLEQDKQDLAARAAGGDSDDMDKAKLGWYRLINNGVV 295
Query: 542 EYVGRGKKTTIMIVMTPEELGELTPIAKSFVLPPEKIK*FKTRSQGHI*SRVETWTECWI 721
EYV ++ TIMIVMTPE+L + + FVLP + R + TWT C I
Sbjct: 296 EYVDAEEEETIMIVMTPEDLLISQQLQQGFVLPEDNSNDLNKRVKATPNPTAHTWTHCEI 355