BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00042331
         (715 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   325   8e-87
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       309   6e-82
gb|EMJ26460.1| hypothetical protein PRUPE_ppa001524mg [Prunus pe...   305   1e-81
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana...   307   2e-81
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   303   6e-81
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   302   1e-80
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   301   1e-80
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   304   2e-80
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   301   3e-80
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   301   3e-80
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   301   3e-80
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   300   4e-80
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   299   7e-80
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   298   2e-79
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   298   2e-79
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   297   4e-79
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   297   1e-78
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   296   4e-78
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   296   4e-78
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      292   6e-77

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  325 bits (833), Expect = 8e-87
 Identities = 163/214 (76%), Positives = 188/214 (87%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY+KYL S   PRSP +SL +GLVY+ +VQITPCKV+FCGPEVNVSNRV+R+Y +DI+NF
Sbjct: 342 QYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNF 401

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEELEKI+STD+ PR SS N  RRTAIY RILSTLQNGIVIG+K+FEF AFSSS
Sbjct: 402 LRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSS 461

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLRENSCWMFASR GLTAADIR WMG+F +IRNVA+YAARLGQSFGSSTET SVS +EIE
Sbjct: 462 QLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIE 521

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEFRSESGVE 644
           I+PD++V RG T+YLFSDGIGKISAEF  +  ++
Sbjct: 522 IIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIK 555


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  309 bits (791), Expect = 6e-82
 Identities = 155/207 (74%), Positives = 177/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY +YLK +  P+SP I+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DINNF
Sbjct: 332 QYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EKI+STDL PRAS+GNG R T IY+RILSTL+NG +IG+KRFEF AFSSS
Sbjct: 392 LRVSFVDEEWEKIHSTDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+FRQIRNVAKYAARLGQSFGSS ET SV R+E+E
Sbjct: 451 QLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDV      T Y+FSDGIGKISA+F
Sbjct: 511 VIPDVACSLHGTNYIFSDGIGKISADF 537


>gb|EMJ26460.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
          Length = 808

 Score =  305 bits (780), Expect(2) = 1e-81
 Identities = 157/214 (73%), Positives = 180/214 (84%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QYRKYL SK  P SP ISL SGLVY+RRVQITPC+VY CGPEVNVSNRV+R Y  DI+NF
Sbjct: 30  QYRKYLTSKKPPLSPIISLDSGLVYVRRVQITPCQVYCCGPEVNVSNRVLRNYPGDIDNF 89

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           +RVSFVDEEL+K++++DL PR S+ NG+ +T IYKRILS L+NGIVIG K+FEF AFSSS
Sbjct: 90  IRVSFVDEELDKLFASDLSPRTSNANGENKTDIYKRILSILRNGIVIGEKKFEFLAFSSS 149

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLRENS WMFASR GLTAADIREWMGNF  IRNVAKYAARLGQSFGSSTET +V  +EIE
Sbjct: 150 QLRENSMWMFASRWGLTAADIREWMGNFCHIRNVAKYAARLGQSFGSSTETLNVGEHEIE 209

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEFRSESGVE 644
           ++PDV V R   KY+FSDGIGKISA+F  +  V+
Sbjct: 210 VIPDV-VSR-DNKYVFSDGIGKISADFAKKVAVK 241



 Score = 25.8 bits (55), Expect(2) = 1e-81
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 650 GTKGSIHPAFQIRYGGGK 703
           G KG    AFQIRYGG K
Sbjct: 243 GFKGCTPSAFQIRYGGYK 260


>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score =  307 bits (786), Expect = 2e-81
 Identities = 156/207 (75%), Positives = 178/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY +YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 331 QYDEYLKHRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 390

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EKI+STDL PRAS+GNG R T IY RILSTL+NG VIG+K+FEF AFSSS
Sbjct: 391 LRVSFVDEEWEKIHSTDLLPRASTGNGIR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSS 449

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+FRQIRNVAKYAARLGQSFGSS ET SVSR+E+E
Sbjct: 450 QLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVSRHEVE 509

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDV      T Y+FSDGIGKISA+F
Sbjct: 510 VIPDVVCSLHGTNYIFSDGIGKISADF 536


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
           tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
           tuberosum]
          Length = 1115

 Score =  303 bits (777), Expect(3) = 6e-81
 Identities = 155/207 (74%), Positives = 178/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 332 QYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YSTDL P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 392 LRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSSTET SV R+EIE
Sbjct: 451 QLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 511 VIPDVKVH--GTSYVFSDGIGKISADF 535



 Score = 23.9 bits (50), Expect(3) = 6e-81
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQ 657
           K   +FARRVA KCG Q
Sbjct: 530 KISADFARRVASKCGLQ 546



 Score = 21.9 bits (45), Expect(3) = 6e-81
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 674 AFQIRYGGGK 703
           AFQIRYGG K
Sbjct: 551 AFQIRYGGYK 560


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  302 bits (773), Expect(2) = 1e-80
 Identities = 156/207 (75%), Positives = 176/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 332 QYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YSTDL P+AS+GNG R T IY RILSTLQ G VIG+K+FEF AFSSS
Sbjct: 392 LRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYVRILSTLQKGFVIGDKKFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 451 QLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           I+PDVKV    T Y+FSDGIGKISA+F
Sbjct: 511 IIPDVKVH--GTSYVFSDGIGKISADF 535



 Score = 25.0 bits (53), Expect(2) = 1e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 530 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 562


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  301 bits (772), Expect(2) = 1e-80
 Identities = 154/207 (74%), Positives = 178/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 180 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 239

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 240 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 298

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSSTET SV R+EIE
Sbjct: 299 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIE 358

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 359 VIPDVKVH--GTSYVFSDGIGKISADF 383



 Score = 25.0 bits (53), Expect(2) = 1e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 378 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 410


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
           gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
           [Nicotiana glutinosa]
          Length = 1117

 Score =  304 bits (778), Expect = 2e-80
 Identities = 155/214 (72%), Positives = 178/214 (83%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY +YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 333 QYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 392

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EKI+STDL PRAS+GNG R T IY RILSTL+NG VIG+K+FEF AFSSS
Sbjct: 393 LRVSFVDEEWEKIHSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSS 451

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG F+QIRNVAKYAARLGQSFGSS ET SV R+E+E
Sbjct: 452 QLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVE 511

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEFRSESGVE 644
           ++PDV      T Y+FSDGIGKISA+F     V+
Sbjct: 512 VIPDVVCSLHGTNYIFSDGIGKISADFARRVAVK 545


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  301 bits (770), Expect(2) = 3e-80
 Identities = 154/207 (74%), Positives = 177/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 298 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 357

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YSTDL P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 358 LRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 416

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 417 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 476

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 477 VIPDVKVH--GTSYVFSDGIGKISADF 501



 Score = 25.0 bits (53), Expect(2) = 3e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 496 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 528


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  301 bits (770), Expect(2) = 3e-80
 Identities = 154/207 (74%), Positives = 177/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 324 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 383

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YSTDL P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 384 LRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 442

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 443 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 502

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 503 VIPDVKVH--GTSYVFSDGIGKISADF 527



 Score = 25.0 bits (53), Expect(2) = 3e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 522 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 554


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  301 bits (770), Expect(2) = 3e-80
 Identities = 154/207 (74%), Positives = 177/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 332 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YSTDL P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 392 LRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 451 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 511 VIPDVKVH--GTSYVFSDGIGKISADF 535



 Score = 25.0 bits (53), Expect(2) = 3e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 530 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 562


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  300 bits (768), Expect(2) = 4e-80
 Identities = 153/207 (73%), Positives = 177/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 331 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 390

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILST+Q G VIG+K+FEF AFSSS
Sbjct: 391 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTMQKGFVIGDKKFEFLAFSSS 449

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 450 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 509

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 510 VIPDVKVH--GTSYVFSDGIGKISADF 534



 Score = 25.0 bits (53), Expect(2) = 4e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 529 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 561


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  299 bits (766), Expect(2) = 7e-80
 Identities = 153/207 (73%), Positives = 177/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 180 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 239

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 240 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 298

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 299 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 358

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 359 VIPDVKVH--GTSYVFSDGIGKISADF 383



 Score = 25.0 bits (53), Expect(2) = 7e-80
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 378 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 410


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  298 bits (762), Expect(2) = 2e-79
 Identities = 152/207 (73%), Positives = 176/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 332 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 392 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLT  DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 451 QLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 511 VIPDVKVH--GTSYVFSDGIGKISADF 535



 Score = 25.0 bits (53), Expect(2) = 2e-79
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 530 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 562


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  298 bits (762), Expect(2) = 2e-79
 Identities = 152/207 (73%), Positives = 176/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 180 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 239

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 240 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 298

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLT  DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 299 QLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE 358

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 359 VIPDVKVH--GTSYVFSDGIGKISADF 383



 Score = 25.0 bits (53), Expect(2) = 2e-79
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 378 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 410


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  297 bits (760), Expect(2) = 4e-79
 Identities = 152/207 (73%), Positives = 176/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 180 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 239

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+ EF AFSSS
Sbjct: 240 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKIEFLAFSSS 298

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 299 QLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE 358

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 359 VIPDVKVH--GTSYVFSDGIGKISADF 383



 Score = 25.0 bits (53), Expect(2) = 4e-79
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 607 KYLLNFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           K   +FARRVA KCG Q  Y        + G KGV
Sbjct: 378 KISADFARRVASKCGLQ--YTPSAFQIRYGGYKGV 410


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
           gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
           [Solanum lycopersicum]
          Length = 1114

 Score =  297 bits (761), Expect(2) = 1e-78
 Identities = 152/207 (73%), Positives = 176/207 (85%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  YLK +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 332 QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YSTDL P+AS+G+G R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 392 LRVSFVDEEWEKLYSTDLLPKASTGSGVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAARLGQSFGSS ET SV R+EIE
Sbjct: 451 QLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKIS +F
Sbjct: 511 VIPDVKVH--GTSYVFSDGIGKISGDF 535



 Score = 22.7 bits (47), Expect(2) = 1e-78
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 619 NFARRVALKCGHQRFYPSCISNSLWWGKKGV 711
           +FA RVA KCG Q  Y        + G KGV
Sbjct: 534 DFAHRVASKCGLQ--YTPSAFQIRYGGYKGV 562


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  296 bits (758), Expect = 4e-78
 Identities = 151/207 (72%), Positives = 175/207 (84%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  Y K +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 332 QYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 392 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAAR GQSFGSS ET SV R+EIE
Sbjct: 451 QLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIE 510

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 511 VIPDVKVH--GTSYVFSDGIGKISADF 535


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  296 bits (758), Expect = 4e-78
 Identities = 151/207 (72%), Positives = 175/207 (84%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           QY  Y K +  P+SPSI+L  GLVY+RRV +TPCKVYFCGPEVNVSNRV+R YS+DI+NF
Sbjct: 368 QYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 427

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LRVSFVDEE EK+YST+L P+AS+GNG R T IY+RILSTL+ G VIG+K+FEF AFSSS
Sbjct: 428 LRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSS 486

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLR+NS WMFASR GLTA DIR WMG+F QI+NVAKYAAR GQSFGSS ET SV R+EIE
Sbjct: 487 QLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIE 546

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PDVKV    T Y+FSDGIGKISA+F
Sbjct: 547 VIPDVKVH--GTSYVFSDGIGKISADF 571


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  292 bits (748), Expect = 6e-77
 Identities = 146/207 (70%), Positives = 175/207 (84%)
 Frame = +3

Query: 3   QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRRYSKDINNF 182
           +Y+ + +S+ +  SP+ISL  GLVY+RRVQITP +VYFCGPE+NVSNRV+R++  DI+NF
Sbjct: 341 EYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNF 400

Query: 183 LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFHAFSSS 362
           LR+SFVDEELEKI+ST++  R       RRT IYKRILSTL+NGIVIGNKRFEF AFSSS
Sbjct: 401 LRISFVDEELEKIHSTNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSS 454

Query: 363 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETPSVSRNEIE 542
           QLRENS WMFASR GLTAADIR WMGNF +IRNVAKYAARLGQSF SSTET SVS++EI 
Sbjct: 455 QLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEIN 514

Query: 543 ILPDVKVERGKTKYLFSDGIGKISAEF 623
           ++PD+++ +   KY+FSDGIGKISAEF
Sbjct: 515 LIPDIEIMKDGIKYVFSDGIGKISAEF 541