BLASTX nr result
ID: Jatropha_contig00042232
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00042232
(534 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524072.1| ribonucleoprotein, chloroplast, putative [Ri... 42 8e-07
gb|EOY08505.1| Chloroplast RNA-binding protein 33 [Theobroma cacao] 41 1e-06
sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, c... 41 4e-06
emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana s... 41 4e-06
emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum] 41 4e-06
gb|EEE92780.2| hypothetical protein POPTR_0006s21650g [Populus t... 42 6e-06
ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 40 6e-06
ref|XP_002309257.1| predicted protein [Populus trichocarpa] 42 6e-06
ref|XP_006348449.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 39 8e-06
ref|XP_004228672.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 39 8e-06
gb|AFK49291.1| unknown [Lotus japonicus] 42 8e-06
>ref|XP_002524072.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223536640|gb|EEF38282.1| ribonucleoprotein,
chloroplast, putative [Ricinus communis]
Length = 190
Score = 42.4 bits (98), Expect(2) = 8e-07
Identities = 29/73 (39%), Positives = 32/73 (43%)
Frame = +2
Query: 272 AFDSTEVSQDDRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLFVGNLPYSMT 451
AFDS EV QDD+ S GRL+VGNLPYSMT
Sbjct: 72 AFDSFEVDQDDKISARDDLQSEPEELGQEIEEEKEFVPVESNDE---GRLYVGNLPYSMT 128
Query: 452 SSQLTEVFPRGRS 490
SS+LTEV S
Sbjct: 129 SSELTEVMQEAGS 141
Score = 36.2 bits (82), Expect(2) = 8e-07
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 477 QEAGQVVNVQIIYDRVTDR 533
QEAG V NV+IIYDRVTDR
Sbjct: 137 QEAGSVANVEIIYDRVTDR 155
>gb|EOY08505.1| Chloroplast RNA-binding protein 33 [Theobroma cacao]
Length = 340
Score = 41.2 bits (95), Expect(2) = 1e-06
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
GRL+VGNLPYSMTSS+L+E+F
Sbjct: 130 GRLYVGNLPYSMTSSELSEIF 150
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG+V NV+I+YDRVTDR
Sbjct: 150 FNEAGRVANVEIVYDRVTDR 169
>sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor gi|100390|pir||S12111 ribonucleoprotein, 33K,
precursor - common tobacco gi|20005|emb|CAA37879.1|
unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 40.8 bits (94), Expect(2) = 4e-06
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
GRL+VGNLP+SMTSSQL+E+F
Sbjct: 114 GRLYVGNLPFSMTSSQLSEIF 134
Score = 35.4 bits (80), Expect(2) = 4e-06
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG V NV+I+YDRVTDR
Sbjct: 134 FAEAGTVANVEIVYDRVTDR 153
>emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 40.8 bits (94), Expect(2) = 4e-06
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
GRL+VGNLP+SMTSSQL+E+F
Sbjct: 109 GRLYVGNLPFSMTSSQLSEIF 129
Score = 35.4 bits (80), Expect(2) = 4e-06
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG V NV+I+YDRVTDR
Sbjct: 129 FAEAGTVANVEIVYDRVTDR 148
>emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 40.8 bits (94), Expect(2) = 4e-06
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
GRL+VGNLP+SMTSSQL+E+F
Sbjct: 103 GRLYVGNLPFSMTSSQLSEIF 123
Score = 35.4 bits (80), Expect(2) = 4e-06
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG V NV+I+YDRVTDR
Sbjct: 123 FAEAGTVANVEIVYDRVTDR 142
>gb|EEE92780.2| hypothetical protein POPTR_0006s21650g [Populus trichocarpa]
Length = 326
Score = 42.0 bits (97), Expect(2) = 6e-06
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
G+L+VGNLPYSMTSS+LTEVF
Sbjct: 118 GKLYVGNLPYSMTSSELTEVF 138
Score = 33.5 bits (75), Expect(2) = 6e-06
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F+EAG+V + ++IYDRVTDR
Sbjct: 138 FEEAGRVFSAEVIYDRVTDR 157
>ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus] gi|449528229|ref|XP_004171108.1| PREDICTED: 33
kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 40.0 bits (92), Expect(2) = 6e-06
Identities = 16/21 (76%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
G+L++GNLPY+MTSSQL+EVF
Sbjct: 115 GKLYIGNLPYAMTSSQLSEVF 135
Score = 35.4 bits (80), Expect(2) = 6e-06
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG VV+VQ+IYD+VTDR
Sbjct: 135 FAEAGHVVSVQVIYDKVTDR 154
>ref|XP_002309257.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 42.0 bits (97), Expect(2) = 6e-06
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
G+L+VGNLPYSMTSS+LTEVF
Sbjct: 113 GKLYVGNLPYSMTSSELTEVF 133
Score = 33.5 bits (75), Expect(2) = 6e-06
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F+EAG+V + ++IYDRVTDR
Sbjct: 133 FEEAGRVFSAEVIYDRVTDR 152
>ref|XP_006348449.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
tuberosum]
Length = 329
Score = 38.9 bits (89), Expect(2) = 8e-06
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
GRL+VGNLP+SMT SQL+E+F
Sbjct: 122 GRLYVGNLPFSMTPSQLSEIF 142
Score = 36.2 bits (82), Expect(2) = 8e-06
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG+V NV+I+YDRVTDR
Sbjct: 142 FTEAGKVANVEIVYDRVTDR 161
>ref|XP_004228672.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
lycopersicum]
Length = 328
Score = 38.9 bits (89), Expect(2) = 8e-06
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +2
Query: 413 GRLFVGNLPYSMTSSQLTEVF 475
GRL+VGNLP+SMT SQL+E+F
Sbjct: 126 GRLYVGNLPFSMTPSQLSEIF 146
Score = 36.2 bits (82), Expect(2) = 8e-06
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG+V NV+I+YDRVTDR
Sbjct: 146 FAEAGKVANVEIVYDRVTDR 165
>gb|AFK49291.1| unknown [Lotus japonicus]
Length = 162
Score = 41.6 bits (96), Expect(2) = 8e-06
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +2
Query: 416 RLFVGNLPYSMTSSQLTEVF 475
RL+VGNLPYSMTSSQLTE+F
Sbjct: 112 RLYVGNLPYSMTSSQLTEIF 131
Score = 33.5 bits (75), Expect(2) = 8e-06
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 474 FQEAGQVVNVQIIYDRVTDR 533
F EAG VV+V+++YDRVTDR
Sbjct: 131 FVEAGTVVSVEVMYDRVTDR 150