BLASTX nr result
ID: Jatropha_contig00040000
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Jatropha_contig00040000 (376 letters) Database: NCBI-nr (updated 2014/02/11) 35,149,712 sequences; 12,374,887,350 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri... 172 3e-41 ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|2... 172 4e-41 ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su... 171 9e-41 gb|EOX92292.1| RNA polymerase II, Rpb4, core protein isoform 1 [... 170 1e-40 gb|ESR41250.1| hypothetical protein CICLE_v10026735mg [Citrus cl... 169 3e-40 gb|ESW06234.1| hypothetical protein PHAVU_010G030200g [Phaseolus... 169 4e-40 gb|AFK35928.1| unknown [Lotus japonicus] 169 4e-40 ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycin... 169 4e-40 ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycin... 169 4e-40 gb|EMJ07326.1| hypothetical protein PRUPE_ppa013142mg [Prunus pe... 168 6e-40 ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycin... 168 6e-40 ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II su... 168 7e-40 ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II su... 167 1e-39 ref|XP_006361114.1| PREDICTED: DNA-directed RNA polymerase II su... 167 2e-39 ref|XP_004241362.1| PREDICTED: DNA-directed RNA polymerase II su... 166 3e-39 gb|ESQ40930.1| hypothetical protein EUTSA_v10014976mg [Eutrema s... 166 4e-39 ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Caps... 166 4e-39 ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 ... 166 4e-39 ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II su... 165 6e-39 ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II su... 165 6e-39 >ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis] gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis] Length = 138 Score = 172 bits (437), Expect = 3e-41 Identities = 87/90 (96%), Positives = 88/90 (97%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMS+DPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 >ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa] gi|222853507|gb|EEE91054.1| hypothetical protein POPTR_0007s06660g [Populus trichocarpa] gi|222856581|gb|EEE94128.1| hypothetical protein POPTR_0005s08690g [Populus trichocarpa] Length = 138 Score = 172 bits (436), Expect = 4e-41 Identities = 86/90 (95%), Positives = 88/90 (97%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGD+FLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 >ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis vinifera] gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera] gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera] Length = 138 Score = 171 bits (433), Expect = 9e-41 Identities = 85/90 (94%), Positives = 88/90 (97%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEVA+ILEHKYEQLQQMSDDP+NQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 >gb|EOX92292.1| RNA polymerase II, Rpb4, core protein isoform 1 [Theobroma cacao] gi|508700397|gb|EOX92293.1| RNA polymerase II, Rpb4, core protein isoform 1 [Theobroma cacao] Length = 138 Score = 170 bits (431), Expect = 1e-40 Identities = 85/90 (94%), Positives = 88/90 (97%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIG+EFLKAKCLMNCEVALILEHKYEQLQQMS+DPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 >gb|ESR41250.1| hypothetical protein CICLE_v10026735mg [Citrus clementina] Length = 138 Score = 169 bits (428), Expect = 3e-40 Identities = 84/90 (93%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEVA+IL+HKYEQLQQ SDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 >gb|ESW06234.1| hypothetical protein PHAVU_010G030200g [Phaseolus vulgaris] Length = 138 Score = 169 bits (427), Expect = 4e-40 Identities = 84/90 (93%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ SDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFE 90 >gb|AFK35928.1| unknown [Lotus japonicus] Length = 138 Score = 169 bits (427), Expect = 4e-40 Identities = 84/90 (93%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ SDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFE 90 >ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max] gi|255632992|gb|ACU16850.1| unknown [Glycine max] Length = 195 Score = 169 bits (427), Expect = 4e-40 Identities = 84/90 (93%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEVALILEHKYEQLQQ SDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RY+LAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYELAEFE 90 >ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max] gi|255632071|gb|ACU16388.1| unknown [Glycine max] Length = 138 Score = 169 bits (427), Expect = 4e-40 Identities = 84/90 (93%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ SDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFE 90 >gb|EMJ07326.1| hypothetical protein PRUPE_ppa013142mg [Prunus persica] Length = 138 Score = 168 bits (426), Expect = 6e-40 Identities = 84/90 (93%), Positives = 86/90 (95%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEVALILEHKY+QLQQMSDDP NQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYDQLQQMSDDPRNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQL EFE Sbjct: 61 YVKRFSRYKNPDAVKQVREILSRYQLTEFE 90 >ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max] gi|255625623|gb|ACU13156.1| unknown [Glycine max] Length = 138 Score = 168 bits (426), Expect = 6e-40 Identities = 83/90 (92%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ SDDPMNQ+SQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFE 90 >ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cucumis sativus] gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cucumis sativus] Length = 138 Score = 168 bits (425), Expect = 7e-40 Identities = 83/90 (92%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMS+DP NQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVRE+LSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFE 90 >ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer arietinum] gi|502155876|ref|XP_004510223.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer arietinum] Length = 138 Score = 167 bits (424), Expect = 1e-39 Identities = 83/90 (92%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LIL+HKYEQLQQ SDDPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKYEQLQQSSDDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFE 90 >ref|XP_006361114.1| PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Solanum tuberosum] Length = 138 Score = 167 bits (422), Expect = 2e-39 Identities = 83/90 (92%), Positives = 85/90 (94%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDP NQ+SQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPTNQISQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV Q REILSRY LAEFE Sbjct: 61 YVKRFSRYKNPDAVRQAREILSRYPLAEFE 90 >ref|XP_004241362.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Solanum lycopersicum] Length = 138 Score = 166 bits (420), Expect = 3e-39 Identities = 82/90 (91%), Positives = 85/90 (94%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEVALILEHKYEQ+QQMSDDP NQ+SQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV Q REILSRY LAEFE Sbjct: 61 YVKRFSRYKNPDAVRQAREILSRYPLAEFE 90 >gb|ESQ40930.1| hypothetical protein EUTSA_v10014976mg [Eutrema salsugineum] Length = 138 Score = 166 bits (419), Expect = 4e-39 Identities = 82/90 (91%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ+S+DPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSR+QL EFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFE 90 >ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Capsella rubella] gi|482557570|gb|EOA21762.1| hypothetical protein CARUB_v10002229mg [Capsella rubella] Length = 138 Score = 166 bits (419), Expect = 4e-39 Identities = 82/90 (91%), Positives = 87/90 (96%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ+S+DPMNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSR+QL EFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFE 90 >ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula] gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula] gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula] Length = 138 Score = 166 bits (419), Expect = 4e-39 Identities = 83/90 (92%), Positives = 86/90 (95%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ SDD MNQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREIL+RYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFE 90 >ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cucumis sativus] Length = 139 Score = 165 bits (417), Expect = 6e-39 Identities = 82/90 (91%), Positives = 86/90 (95%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ ++DP NQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 >ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cucumis sativus] Length = 138 Score = 165 bits (417), Expect = 6e-39 Identities = 82/90 (91%), Positives = 86/90 (95%) Frame = +2 Query: 107 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKFLQ 286 MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ ++DP NQVSQVFEK LQ Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQ 60 Query: 287 YVKRFSRYKNPDAV*QVREILSRYQLAEFE 376 YVKRFSRYKNPDAV QVREILSRYQLAEFE Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFE 90 Database: NCBI-nr (updated 2014/02/11) Posted date: Feb 11, 2014 4:56 AM Number of letters in database: 12,374,887,350 Number of sequences in database: 35,149,712 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 35149712 Number of Hits to DB: 57,283,302,026,007 Number of extensions: 321264217 Number of successful extensions: -1346775739 Number of sequences better than 1.0e-05: 8440526 Number of HSP's gapped: -1368198042 Number of HSP's successfully gapped: 10267991 Length of database: 12,374,887,350 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 30 (16.2 bits)