BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00037921
         (568 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN7...   375   e-102
ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul...   343   1e-92
gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla...   343   1e-92
ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili...   342   3e-92
ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus co...   331   6e-89
gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. s...   331   6e-89
gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloropla...   325   4e-87
gb|ABV65752.1| RNA polymerase beta'' subunit, partial (chloropla...   320   1e-85
gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloropla...   320   1e-85
gb|ABV65732.1| RNA polymerase beta'' subunit, partial (chloropla...   315   4e-84
gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloropla...   315   5e-84
gb|ABV65764.1| RNA polymerase beta'' subunit, partial (chloropla...   314   8e-84
gb|ABV65778.1| RNA polymerase beta'' subunit, partial (chloropla...   312   3e-83
gb|ABQ15065.1| RNA polymerase beta' subunit [Exbucklandia populnea]   312   4e-83
ref|YP_004072452.1| RNA polymerase beta II subunit [Corynocarpus...   310   2e-82
gb|AEH42620.1| RNA polymerase beta subunit [Garcinia mangostana]      310   2e-82
gb|ABV65780.1| RNA polymerase beta'' subunit, partial (chloropla...   310   2e-82
gb|ABV65731.1| RNA polymerase beta'' subunit, partial (chloropla...   310   2e-82
gb|ABV65724.1| RNA polymerase beta'' subunit, partial (chloropla...   310   2e-82
gb|ABV65779.1| RNA polymerase beta'' subunit, partial (chloropla...   309   3e-82

>ref|YP_002720102.1| rpoC2 [Jatropha curcas] gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha
            curcas]
          Length = 1394

 Score =  375 bits (963), Expect = e-102
 Identities = 187/189 (98%), Positives = 187/189 (98%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG LIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE
Sbjct: 732  IHFPGETDKISRHSGILIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 791

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD
Sbjct: 792  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 851

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN
Sbjct: 852  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 911

Query: 542  INPFYPFYS 568
            INPFYP YS
Sbjct: 912  INPFYPIYS 920


>ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
            gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            gi|157695875|gb|ABV66144.1| RNA polymerase beta subunit
            [Manihot esculenta]
          Length = 1393

 Score =  343 bits (881), Expect = 1e-92
 Identities = 172/189 (91%), Positives = 176/189 (93%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHS  LIPPGTVKTNSKESKKVKNWIYIQRIT  KKKYFVLVRPVIIYE
Sbjct: 727  IHFPGETDKISRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYE 786

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IA+GINLETLFPQDLLQEK+NLKLRVVNYILYG GK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 787  IANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQD 846

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARA+FVE+STNGLI DFLRINL K HISYI RKRNDPSGS PISNN SDRTN
Sbjct: 847  KKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGSDRTN 906

Query: 542  INPFYPFYS 568
            INPFYP YS
Sbjct: 907  INPFYPIYS 915


>gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
            esculenta]
          Length = 1281

 Score =  343 bits (881), Expect = 1e-92
 Identities = 172/189 (91%), Positives = 176/189 (93%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHS  LIPPGTVKTNSKESKKVKNWIYIQRIT  KKKYFVLVRPVIIYE
Sbjct: 697  IHFPGETDKISRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYE 756

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IA+GINLETLFPQDLLQEK+NLKLRVVNYILYG GK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 757  IANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQD 816

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARA+FVE+STNGLI DFLRINL K HISYI RKRNDPSGS PISNN SDRTN
Sbjct: 817  KKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGSDRTN 876

Query: 542  INPFYPFYS 568
            INPFYP YS
Sbjct: 877  INPFYPIYS 885


>ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
            gi|308523496|gb|ADO33546.1| RNA polymerase beta'' subunit
            [Hevea brasiliensis]
          Length = 1395

 Score =  342 bits (878), Expect = 3e-92
 Identities = 172/189 (91%), Positives = 176/189 (93%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG L+PPGTVKTNSKESKKVKNWIYIQRIT  KKKYFVLVRPVIIYE
Sbjct: 727  IHFPGETDKISRHSGILMPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYE 786

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IA+GINLETLFPQDLLQEK+NLKLRVVNYILYG GK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 787  IANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQD 846

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARA FVE+STNGLI DFLRINL KSHISYI RKRNDPSGS  ISNN SDRTN
Sbjct: 847  KKSSSIEEARAFFVEISTNGLIRDFLRINLVKSHISYIGRKRNDPSGSELISNNGSDRTN 906

Query: 542  INPFYPFYS 568
            INPFYP YS
Sbjct: 907  INPFYPIYS 915


>ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis]
            gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit
            [Ricinus communis]
          Length = 1405

 Score =  331 bits (849), Expect = 6e-89
 Identities = 166/188 (88%), Positives = 174/188 (92%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG LIPPG VKTNSKESKK KNWIYIQRI   +KKYFVLVR VIIYE
Sbjct: 731  IHFPGETDKISRHSGILIPPGMVKTNSKESKKQKNWIYIQRIAPTRKKYFVLVRLVIIYE 790

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IA+GINLETLFP+DLLQEK+NLKLRVVNYIL GNGK IRGISDTSIQLVRTCLVLNWDQ+
Sbjct: 791  IANGINLETLFPRDLLQEKDNLKLRVVNYILSGNGKPIRGISDTSIQLVRTCLVLNWDQE 850

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFVEV+TNGLI DFLRINL KSHISYISRKRNDPSGSGPISNN ++ TN
Sbjct: 851  KKSSSIEEARASFVEVNTNGLIRDFLRINLVKSHISYISRKRNDPSGSGPISNNGANHTN 910

Query: 542  INPFYPFY 565
            INPFYP Y
Sbjct: 911  INPFYPIY 918


>gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens]
          Length = 814

 Score =  331 bits (849), Expect = 6e-89
 Identities = 171/192 (89%), Positives = 174/192 (90%), Gaps = 3/192 (1%)
 Frame = +2

Query: 2   IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
           IHFPGETDKISRHSG LIPPGTVKT+SKESKKVKNWIYIQRIT  KKKYFVLVRPVIIYE
Sbjct: 253 IHFPGETDKISRHSGILIPPGTVKTHSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYE 312

Query: 182 IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
           IA+GINLETLFP DLLQEK+NLKLRVVNYILYGN K IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 313 IANGINLETLFPADLLQEKDNLKLRVVNYILYGNSKPIRGISDTSIQLVRTCLVLNWDQD 372

Query: 362 KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYIS---RKRNDPSGSGPISNNESD 532
           KKSSSIEEARASFVEVSTNGLI DFLRINL KS I YIS   R RNDPSG GPISNN SD
Sbjct: 373 KKSSSIEEARASFVEVSTNGLIRDFLRINLLKSKIFYISSRTRNRNDPSGLGPISNNGSD 432

Query: 533 RTNINPFYPFYS 568
            TNINPFYP YS
Sbjct: 433 PTNINPFYPSYS 444


>gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes
            icosandra x Ixonanthes cuneata]
          Length = 1262

 Score =  325 bits (834), Expect = 4e-87
 Identities = 165/189 (87%), Positives = 172/189 (91%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHF GETDKISR+SG LIPPGTVKTNSKESKKVKNWIY+ RIT  KKKYFVLVRPVIIYE
Sbjct: 694  IHFLGETDKISRYSGILIPPGTVKTNSKESKKVKNWIYVHRITPTKKKYFVLVRPVIIYE 753

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINLET FP DLLQEK+NLKLRVVNYILYGNGK I+GISD SIQLVRTCLVLNWDQD
Sbjct: 754  IADGINLETFFPPDLLQEKDNLKLRVVNYILYGNGKPIQGISDASIQLVRTCLVLNWDQD 813

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFVEVSTNGLI DFL+INL KSHISYISRK NDPSGS  IS++ SDRTN
Sbjct: 814  KKSSSIEEARASFVEVSTNGLIRDFLKINLVKSHISYISRKGNDPSGSELISDHGSDRTN 873

Query: 542  INPFYPFYS 568
            INPFY  YS
Sbjct: 874  INPFYSIYS 882


>gb|ABV65752.1| RNA polymerase beta'' subunit, partial (chloroplast) [Leonia
            glycycarpa]
          Length = 1274

 Score =  320 bits (821), Expect = 1e-85
 Identities = 163/189 (86%), Positives = 169/189 (89%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPG+TDKISR+SG LI PG VKTNSKESKKVKNWIY+QRIT  KKKYFVLVRPVIIYE
Sbjct: 694  IHFPGKTDKISRYSGILISPGPVKTNSKESKKVKNWIYVQRITPTKKKYFVLVRPVIIYE 753

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINLETLF  DLLQEK NLKLRVVNYILYGNGK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 754  IADGINLETLFYSDLLQEKNNLKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQD 813

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFV++STNGLI DFLRINL KSH  YISRKRN PS SG IS+N  DRTN
Sbjct: 814  KKSSSIEEARASFVKISTNGLIRDFLRINLVKSHFFYISRKRNGPSSSGSISDNGLDRTN 873

Query: 542  INPFYPFYS 568
            INPFY  YS
Sbjct: 874  INPFYFLYS 882


>gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
            lucida]
          Length = 1280

 Score =  320 bits (820), Expect = 1e-85
 Identities = 163/185 (88%), Positives = 170/185 (91%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG LIPPGTVK NSKESKK+KNWIY+QRIT  KKKYFVLVRPVIIYE
Sbjct: 696  IHFPGETDKISRHSGILIPPGTVKKNSKESKKLKNWIYVQRITPTKKKYFVLVRPVIIYE 755

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINL TLFPQDLLQE++NL+LRVVNYILYGNGK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 756  IADGINLATLFPQDLLQERDNLQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQD 815

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEA ASFVEVSTN LI DFLRI+L KSHISYI RKRNDPSGSG IS+N SD T 
Sbjct: 816  KKSSSIEEAPASFVEVSTNSLIRDFLRIDLVKSHISYI-RKRNDPSGSGLISDNGSDHTT 874

Query: 542  INPFY 556
            INPFY
Sbjct: 875  INPFY 879


>gb|ABV65732.1| RNA polymerase beta'' subunit, partial (chloroplast) [Elatine
           triandra]
          Length = 692

 Score =  315 bits (808), Expect = 4e-84
 Identities = 164/193 (84%), Positives = 169/193 (87%), Gaps = 4/193 (2%)
 Frame = +2

Query: 2   IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
           IHFPGETDKISR SG LIPPGTVKTNSK+SKK KNWIY+QRIT  KKKY VLVRPVIIYE
Sbjct: 103 IHFPGETDKISRDSGILIPPGTVKTNSKKSKKGKNWIYVQRITPTKKKYCVLVRPVIIYE 162

Query: 182 IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGI----SDTSIQLVRTCLVLN 349
           IADGINL TLFPQDLLQEK+NLKLRVVNYILY NGK IRGI       SIQLVRTCLVLN
Sbjct: 163 IADGINLATLFPQDLLQEKDNLKLRVVNYILYENGKPIRGIXXXXXXXSIQLVRTCLVLN 222

Query: 350 WDQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNES 529
           WDQDKK SSIEEARASFVEV TNGLI DFLRINL KSHISYISRKRNDPSGSG IS+NES
Sbjct: 223 WDQDKKGSSIEEARASFVEVRTNGLIRDFLRINLVKSHISYISRKRNDPSGSGLISDNES 282

Query: 530 DRTNINPFYPFYS 568
           + TNINPFY  YS
Sbjct: 283 NPTNINPFYSLYS 295


>gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ochna
            mossambicensis]
          Length = 1268

 Score =  315 bits (807), Expect = 5e-84
 Identities = 161/185 (87%), Positives = 167/185 (90%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG LIPPG VKTNSKESKKVKNWIY+QRIT  KKK+FVLVRPVIIYE
Sbjct: 693  IHFPGETDKISRHSGILIPPGRVKTNSKESKKVKNWIYVQRITPTKKKHFVLVRPVIIYE 752

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINLETLFPQ LL+EKENLKLRVVNYI YGNGK IRGISDT+IQLVRTCLVLNWDQD
Sbjct: 753  IADGINLETLFPQGLLKEKENLKLRVVNYIFYGNGKPIRGISDTNIQLVRTCLVLNWDQD 812

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEA ASFVEVSTNGLI DFLRI   K HISYISRKRNDPSGSG +S+N  D T 
Sbjct: 813  KKSSSIEEAHASFVEVSTNGLIRDFLRI---KCHISYISRKRNDPSGSGVLSDNGPDHTI 869

Query: 542  INPFY 556
            INPFY
Sbjct: 870  INPFY 874


>gb|ABV65764.1| RNA polymerase beta'' subunit, partial (chloroplast) [Phyllanthus
            calycinus]
          Length = 1271

 Score =  314 bits (805), Expect = 8e-84
 Identities = 159/189 (84%), Positives = 170/189 (89%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG LIPP TVKTNSKESKKVKNWIY+QRIT  KKK+FVLVRPVI++E
Sbjct: 692  IHFPGETDKISRHSGILIPPETVKTNSKESKKVKNWIYVQRITPTKKKFFVLVRPVILFE 751

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            I DGINLE LFPQDLLQEK++LKLR+VNYILYGNGK IRGISDTSIQLVRTCLVL WDQD
Sbjct: 752  IVDGINLEKLFPQDLLQEKDDLKLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLTWDQD 811

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            +KS   EEA  SFVEVSTNGLI +FLRINLAKS ISYISRKRNDPSGSG IS+N SDRTN
Sbjct: 812  QKS---EEAHVSFVEVSTNGLIHEFLRINLAKSPISYISRKRNDPSGSGLISDNGSDRTN 868

Query: 542  INPFYPFYS 568
            +NPFY  YS
Sbjct: 869  MNPFYSIYS 877


>gb|ABV65778.1| RNA polymerase beta'' subunit, partial (chloroplast) [Strasburgeria
            robusta]
          Length = 1281

 Score =  312 bits (800), Expect = 3e-83
 Identities = 159/185 (85%), Positives = 169/185 (91%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGETDKISRHSG LIPPGT K NSKESKK+KNWIY+QRIT  KKKYFVLVRPV+ YE
Sbjct: 695  IHFPGETDKISRHSGILIPPGTGKRNSKESKKLKNWIYVQRITPTKKKYFVLVRPVVTYE 754

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINL TLFPQDLL+E +N++LRVVNYILYGNGK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 755  IADGINLATLFPQDLLREGDNMQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQD 814

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFVEVSTNGLI DFLRI+L KSHISYI RKRND SGSG IS+N S+RT 
Sbjct: 815  KKSSSIEEARASFVEVSTNGLIRDFLRIDLVKSHISYI-RKRNDLSGSGLISDNGSNRTK 873

Query: 542  INPFY 556
            INPFY
Sbjct: 874  INPFY 878


>gb|ABQ15065.1| RNA polymerase beta' subunit [Exbucklandia populnea]
          Length = 802

 Score =  312 bits (799), Expect = 4e-83
 Identities = 159/189 (84%), Positives = 169/189 (89%)
 Frame = +2

Query: 2   IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
           IHFPGETDKI+RHSG LIPPGT KTNSKESKK+KNWIY+QRIT  KKKYFVLVRPV+ YE
Sbjct: 239 IHFPGETDKIARHSGILIPPGTGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPVVTYE 298

Query: 182 IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
           IADGINL TLFPQDLLQE++N+KLRVVNYILYGNGK IRGI DTSIQLVRTCLVLNWDQD
Sbjct: 299 IADGINLATLFPQDLLQERDNMKLRVVNYILYGNGKPIRGIYDTSIQLVRTCLVLNWDQD 358

Query: 362 KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
           KKSSSI EA ASFVEV TNGLI DFLRI+L KS ISY + KRNDPSGSG IS+N SDRTN
Sbjct: 359 KKSSSIGEAYASFVEVRTNGLIRDFLRIDLVKSPISY-TGKRNDPSGSGLISDNGSDRTN 417

Query: 542 INPFYPFYS 568
           INPFY  YS
Sbjct: 418 INPFYSTYS 426


>ref|YP_004072452.1| RNA polymerase beta II subunit [Corynocarpus laevigata]
            gi|309252880|gb|ADO60300.1| RNA polymerase beta II
            subunit [Corynocarpus laevigata]
          Length = 1380

 Score =  310 bits (794), Expect = 2e-82
 Identities = 158/189 (83%), Positives = 170/189 (89%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPG+ DKISRH+G LIPP  +K  SK+SK++KNWIY+Q IT  KKKYFVLVRPVIIYE
Sbjct: 715  IHFPGKMDKISRHNGILIPPERLKKISKKSKQLKNWIYVQWITPNKKKYFVLVRPVIIYE 774

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINL TLFPQDLLQE++NL+LRVVNYILYGNGK IRGIS TSIQLVRTCLVLNWDQD
Sbjct: 775  IADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLVLNWDQD 834

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFVEVSTNGL+ DFLRI+L KSHISYI RKR DPSGSG ISNNESDRTN
Sbjct: 835  KKSSSIEEARASFVEVSTNGLVRDFLRIDLVKSHISYI-RKRKDPSGSGLISNNESDRTN 893

Query: 542  INPFYPFYS 568
            INPFY  YS
Sbjct: 894  INPFYSIYS 902


>gb|AEH42620.1| RNA polymerase beta subunit [Garcinia mangostana]
          Length = 1334

 Score =  310 bits (793), Expect = 2e-82
 Identities = 156/189 (82%), Positives = 170/189 (89%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFPGE DKISRHSG LIPP  VKTN KESKKVKNWIY+QRIT +KKKYFVLVRPVIIYE
Sbjct: 708  IHFPGEIDKISRHSGILIPPQRVKTNFKESKKVKNWIYVQRITPSKKKYFVLVRPVIIYE 767

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINLETLFPQDLLQEKENLKLRVVN+ILYGNGK IRGISDTSIQLVRT LVLNW+QD
Sbjct: 768  IADGINLETLFPQDLLQEKENLKLRVVNFILYGNGKPIRGISDTSIQLVRTSLVLNWEQD 827

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KK+SS+EEAR SF+EV+TNGLI DFL+I+L +SHISYISRKRND SGSG IS+N   RTN
Sbjct: 828  KKNSSVEEARPSFIEVNTNGLIRDFLKIHLVESHISYISRKRNDSSGSGLISDNGPARTN 887

Query: 542  INPFYPFYS 568
            +N F+  YS
Sbjct: 888  MNLFFSVYS 896


>gb|ABV65780.1| RNA polymerase beta'' subunit, partial (chloroplast) [Suriana
            maritima]
          Length = 1274

 Score =  310 bits (793), Expect = 2e-82
 Identities = 159/192 (82%), Positives = 169/192 (88%), Gaps = 3/192 (1%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVK---TNSKESKKVKNWIYIQRITSAKKKYFVLVRPVI 172
            IHFPGE DKISRH+G LIPPGTVK   +  KESKK+KNWIY+Q IT  KKKYFVLVRPVI
Sbjct: 696  IHFPGEMDKISRHNGILIPPGTVKKKNSKDKESKKIKNWIYVQWITPTKKKYFVLVRPVI 755

Query: 173  IYEIADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNW 352
            IYEIADGINL TLFP DL QE++NL+L+VVNYILYGNGK IRGISDTSIQLVRTCLVLNW
Sbjct: 756  IYEIADGINLVTLFPPDLFQERDNLELKVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW 815

Query: 353  DQDKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESD 532
            DQDKKSSSIEE  ASFVEVSTNGLI DFLRI+L KSHISYI RKRND SGSG IS+NESD
Sbjct: 816  DQDKKSSSIEETHASFVEVSTNGLIRDFLRIDLVKSHISYI-RKRNDASGSGLISDNESD 874

Query: 533  RTNINPFYPFYS 568
            RTNINPFY  YS
Sbjct: 875  RTNINPFYSIYS 886


>gb|ABV65731.1| RNA polymerase beta'' subunit, partial (chloroplast) [Elaeocarpus
            angustifolius]
          Length = 1263

 Score =  310 bits (793), Expect = 2e-82
 Identities = 157/185 (84%), Positives = 166/185 (89%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            I+FPGETDKISRH   LIPPGTVK NSKESKK+KNWIY+QRIT  KKKYFVLVRP IIYE
Sbjct: 692  IYFPGETDKISRHGDILIPPGTVKKNSKESKKLKNWIYVQRITPTKKKYFVLVRPAIIYE 751

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINL TLFPQDLLQE++NL+LR+VNYILYGNGK IRGISDTSIQLVRTCLVLNWDQD
Sbjct: 752  IADGINLATLFPQDLLQERDNLQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQD 811

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEA  SFVEVSTN LI DFLRI+L KSHI YI RKRNDPSGSG I +N SDRTN
Sbjct: 812  KKSSSIEEAPTSFVEVSTNSLIRDFLRIDLVKSHILYI-RKRNDPSGSGLIFDNGSDRTN 870

Query: 542  INPFY 556
            INPFY
Sbjct: 871  INPFY 875


>gb|ABV65724.1| RNA polymerase beta'' subunit, partial (chloroplast) [Coriaria
            nepalensis]
          Length = 1283

 Score =  310 bits (793), Expect = 2e-82
 Identities = 160/189 (84%), Positives = 168/189 (88%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKTNSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIYE 181
            IHFP E DKISRHSG LIPP   K NSK+SKK+KNWIY+Q IT  KKKYFVLVRPVIIYE
Sbjct: 698  IHFPVEIDKISRHSGILIPPERGKKNSKKSKKLKNWIYVQWITPTKKKYFVLVRPVIIYE 757

Query: 182  IADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQD 361
            IADGINL TLFPQD LQE++NL+LRVVNYILYGNGK IRGIS TSIQLVRTCLVL WDQD
Sbjct: 758  IADGINLVTLFPQDPLQERDNLELRVVNYILYGNGKRIRGISGTSIQLVRTCLVLTWDQD 817

Query: 362  KKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRTN 541
            KKSSSIEEARASFVEVSTNGL+ DFLRI+LAKSHISYI RKR DPSGSG ISNNESDRTN
Sbjct: 818  KKSSSIEEARASFVEVSTNGLVRDFLRIDLAKSHISYI-RKRKDPSGSGLISNNESDRTN 876

Query: 542  INPFYPFYS 568
            INPFY  YS
Sbjct: 877  INPFYSTYS 885


>gb|ABV65779.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stylobasium
            spathulatum]
          Length = 1266

 Score =  309 bits (792), Expect = 3e-82
 Identities = 160/189 (84%), Positives = 169/189 (89%), Gaps = 1/189 (0%)
 Frame = +2

Query: 2    IHFPGETDKISRHSGTLIPPGTVKT-NSKESKKVKNWIYIQRITSAKKKYFVLVRPVIIY 178
            IHFPGE DKISRHSG LIPPGTVK  NSKESKK KNWIY+Q IT  KKKYFVLVRPVIIY
Sbjct: 695  IHFPGELDKISRHSGILIPPGTVKNKNSKESKKWKNWIYVQWITPTKKKYFVLVRPVIIY 754

Query: 179  EIADGINLETLFPQDLLQEKENLKLRVVNYILYGNGKLIRGISDTSIQLVRTCLVLNWDQ 358
            EIADGINL TLFPQDLLQE++NL+L+VVNYILYGNGK IRGISDTSIQLVRTCLVLNWDQ
Sbjct: 755  EIADGINLVTLFPQDLLQERDNLELKVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQ 814

Query: 359  DKKSSSIEEARASFVEVSTNGLICDFLRINLAKSHISYISRKRNDPSGSGPISNNESDRT 538
            DKKSSSIEEA ASFVEVS  G+I DFLRI+L KSHISYI RKRND SGSG IS+NESDRT
Sbjct: 815  DKKSSSIEEAHASFVEVSIKGIIQDFLRIDLVKSHISYI-RKRNDASGSGFISDNESDRT 873

Query: 539  NINPFYPFY 565
            NINPF+  Y
Sbjct: 874  NINPFFSIY 882