BLASTX nr result
ID: Jatropha_contig00037724
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00037724
(589 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV a... 82 4e-27
ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm... 111 2e-22
gb|EMJ13903.1| hypothetical protein PRUPE_ppa018644mg, partial [... 95 1e-21
ref|XP_002329936.1| predicted protein [Populus trichocarpa] gi|5... 100 3e-19
gb|EMJ13140.1| hypothetical protein PRUPE_ppa010773mg [Prunus pe... 99 8e-19
gb|EMJ13139.1| hypothetical protein PRUPE_ppa010773mg [Prunus pe... 99 8e-19
gb|ESR63231.1| hypothetical protein CICLE_v10016499mg [Citrus cl... 93 4e-17
gb|ESR63230.1| hypothetical protein CICLE_v10016499mg [Citrus cl... 93 4e-17
gb|ESR63229.1| hypothetical protein CICLE_v10016499mg [Citrus cl... 93 4e-17
ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246... 91 2e-16
ref|XP_004293416.1| PREDICTED: uncharacterized protein LOC101305... 89 6e-16
gb|ESQ39939.1| hypothetical protein EUTSA_v10001026mg [Eutrema s... 88 2e-15
gb|EOY29038.1| DNA-directed RNA polymerase II subunit rpb4, puta... 87 2e-15
gb|EOY29037.1| DNA-directed RNA polymerase II subunit rpb4, puta... 87 2e-15
gb|EOY29035.1| DNA-directed RNA polymerase II subunit rpb4, puta... 87 2e-15
ref|XP_004486378.1| PREDICTED: uncharacterized protein LOC101499... 87 3e-15
ref|XP_004486377.1| PREDICTED: uncharacterized protein LOC101499... 87 3e-15
ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II su... 86 5e-15
gb|AFK45778.1| unknown [Medicago truncatula] 86 7e-15
ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 ... 86 7e-15
>ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
[Solanum tuberosum]
Length = 220
Score = 81.6 bits (200), Expect(2) = 4e-27
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + N+ C+MDCEAA ILQGIQE MV+LS DP IKLPVSFDRGL YA+ Y +P
Sbjct: 95 RVEQELPANSTCLMDCEAADILQGIQENMVVLSDDPAIKLPVSFDRGLAYAQRNRLYDNP 154
Query: 581 QSV 589
Q+V
Sbjct: 155 QAV 157
Score = 65.9 bits (159), Expect(2) = 4e-27
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 27/103 (26%)
Frame = +1
Query: 193 EKGGKGFSLPTKGLKSSLKSTAKGTLKGKDDN--PAKLGRKVQFNSEG*C---------- 336
EKGGKGFSLP G KS+LKS A KGKDD+ +K GRKVQF+SEG
Sbjct: 3 EKGGKGFSLPKSG-KSALKSPAS---KGKDDSSVKSKRGRKVQFDSEGSLDTNSTKSNGK 58
Query: 337 -----------KRDKGDKVSNDGKAKES----PLELKIEQELP 420
K KG+K + GK++++ PLEL++EQELP
Sbjct: 59 ADIPSLKGDLGKAGKGEKAGSAGKSQKAKAPDPLELRVEQELP 101
>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical
protein [Ricinus communis]
Length = 203
Score = 111 bits (277), Expect = 2e-22
Identities = 68/138 (49%), Positives = 87/138 (63%), Gaps = 7/138 (5%)
Frame = +2
Query: 197 RGGKGFHCPLKVXXXXXXXXXRAH*KGRM-TILQSLEGK---FSSILKVNVSGIKE---T 355
+GGKGF P K A KG+ T +S GK F+S ++ G +
Sbjct: 3 KGGKGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQGNMSKGGKGDKVSN 62
Query: 356 RFQTMGRQKNHHLN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFD 535
+ ++ L K+ ++ KNAKC+MDCEAAQ+LQGIQEQMVLLSRDPTIKLPVSFD
Sbjct: 63 GVKISSTKEPQPLELKIEQDLPKNAKCLMDCEAAQVLQGIQEQMVLLSRDPTIKLPVSFD 122
Query: 536 RGLQYAKTGARYTSPQSV 589
R LQ+A+TGAR+T+PQSV
Sbjct: 123 RALQHARTGARFTNPQSV 140
Score = 93.6 bits (231), Expect = 3e-17
Identities = 58/91 (63%), Positives = 63/91 (69%), Gaps = 9/91 (9%)
Frame = +1
Query: 190 MEKGGKGFSLPTKGLKSSLKSTAKGTLKGKDDNPA--KLGRKVQFNSEG-*CKRDKGDKV 360
MEKGGKGFSLP KGLKSSLKS + KGKDD A K G+KVQFNS+G K KGDKV
Sbjct: 1 MEKGGKGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQGNMSKGGKGDKV 60
Query: 361 SNDGKAKES----PLELKIEQELPK--KCQM 435
SN K + PLELKIEQ+LPK KC M
Sbjct: 61 SNGVKISSTKEPQPLELKIEQDLPKNAKCLM 91
>gb|EMJ13903.1| hypothetical protein PRUPE_ppa018644mg, partial [Prunus persica]
Length = 133
Score = 94.7 bits (234), Expect(2) = 1e-21
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +2
Query: 407 SRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSPQS 586
S ++AKC+MDCEAA ILQGIQEQ++LLS+DPTIK+PVSFD+GLQYAK + YT+PQS
Sbjct: 34 SEELPQSAKCLMDCEAADILQGIQEQIILLSKDPTIKIPVSFDKGLQYAKRTSHYTNPQS 93
Query: 587 V 589
V
Sbjct: 94 V 94
Score = 34.7 bits (78), Expect(2) = 1e-21
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 193 EKGGKGFSLPTKGLKSSLKSTAKGTLKGKDDNP--AKLGRKVQFNSE 327
EKG KGFS+ +LKGKDD+ +K GRKVQF+SE
Sbjct: 3 EKGAKGFSV--------------ASLKGKDDSSTKSKKGRKVQFDSE 35
>ref|XP_002329936.1| predicted protein [Populus trichocarpa] gi|550320481|gb|ERP51368.1|
hypothetical protein POPTR_0016s00490g [Populus
trichocarpa]
Length = 197
Score = 100 bits (249), Expect = 3e-19
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
K+ +NAK +MDCEAAQILQGIQ+QMVLLS+DPTIKLPVSFD+GLQYAK GA YT+P
Sbjct: 72 KIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQYAKNGAHYTNP 131
Query: 581 QSV 589
QSV
Sbjct: 132 QSV 134
Score = 70.5 bits (171), Expect = 3e-10
Identities = 47/87 (54%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Frame = +1
Query: 190 MEKGG-KGFSLPTKGLKSSLKSTAKGTLKGKDDNPAKLGRKVQFNSEG-*CKRDKGDKVS 363
MEKGG KGFSLP+K KSSLKS+ + KGKDD + GRK+ F SEG K KG K++
Sbjct: 1 MEKGGGKGFSLPSKEPKSSLKSS---STKGKDD--SNNGRKIHFESEGNLSKGGKGGKIA 55
Query: 364 NDGKA----KESPLELKIEQELPKKCQ 432
N GK+ + PLELKIE ELP+ +
Sbjct: 56 NGGKSPMTKEPPPLELKIESELPQNAK 82
>gb|EMJ13140.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
Length = 237
Score = 99.0 bits (245), Expect = 8e-19
Identities = 48/74 (64%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Frame = +2
Query: 371 GRQKNHH-LN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQ 547
GR+K L K+ + ++AKC+MDCEAA ILQGIQEQM+LLS+DPTIK+PVSFD+GLQ
Sbjct: 101 GRKKEPQPLELKIEQELPQSAKCLMDCEAADILQGIQEQMILLSKDPTIKIPVSFDKGLQ 160
Query: 548 YAKTGARYTSPQSV 589
YAK + YT+PQSV
Sbjct: 161 YAKRTSHYTNPQSV 174
Score = 75.1 bits (183), Expect = 1e-11
Identities = 57/123 (46%), Positives = 64/123 (52%), Gaps = 42/123 (34%)
Frame = +1
Query: 193 EKGGKGFSLPT-KGLKSSLKSTAK---------------GTLKGKDDNP--AKLGRKVQF 318
EKGGKGFSLPT K +KSSLKST +LKGKDD+ +K GRKVQF
Sbjct: 3 EKGGKGFSLPTGKAVKSSLKSTPSTKDGLLFLRSLLFLTSSLKGKDDSSTKSKKGRKVQF 62
Query: 319 NSEG*C----------------------KRDKGDKVSNDGKAKESPLELKIEQELPK--K 426
+SEG K KGDKV N K + PLELKIEQELP+ K
Sbjct: 63 DSEGLHEPKSNFSSKFDNPAAASGKDWGKGGKGDKVGNGRKKEPQPLELKIEQELPQSAK 122
Query: 427 CQM 435
C M
Sbjct: 123 CLM 125
>gb|EMJ13139.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
Length = 225
Score = 99.0 bits (245), Expect = 8e-19
Identities = 48/74 (64%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Frame = +2
Query: 371 GRQKNHH-LN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQ 547
GR+K L K+ + ++AKC+MDCEAA ILQGIQEQM+LLS+DPTIK+PVSFD+GLQ
Sbjct: 89 GRKKEPQPLELKIEQELPQSAKCLMDCEAADILQGIQEQMILLSKDPTIKIPVSFDKGLQ 148
Query: 548 YAKTGARYTSPQSV 589
YAK + YT+PQSV
Sbjct: 149 YAKRTSHYTNPQSV 162
Score = 79.7 bits (195), Expect = 5e-13
Identities = 57/111 (51%), Positives = 64/111 (57%), Gaps = 30/111 (27%)
Frame = +1
Query: 193 EKGGKGFSLPT-KGLKSSLKSTAK---GTLKGKDDNP--AKLGRKVQFNSEG*C------ 336
EKGGKGFSLPT K +KSSLKST +LKGKDD+ +K GRKVQF+SEG
Sbjct: 3 EKGGKGFSLPTGKAVKSSLKSTPSTKDASLKGKDDSSTKSKKGRKVQFDSEGLHEPKSNF 62
Query: 337 ----------------KRDKGDKVSNDGKAKESPLELKIEQELPK--KCQM 435
K KGDKV N K + PLELKIEQELP+ KC M
Sbjct: 63 SSKFDNPAAASGKDWGKGGKGDKVGNGRKKEPQPLELKIEQELPQSAKCLM 113
>gb|ESR63231.1| hypothetical protein CICLE_v10016499mg [Citrus clementina]
Length = 225
Score = 93.2 bits (230), Expect = 4e-17
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + KNAKC+MDCEAA IL+GIQEQM LLS DPTIK+PVSFD+GL YAKT + +T+P
Sbjct: 101 RVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNP 160
Query: 581 QSV 589
Q+V
Sbjct: 161 QAV 163
Score = 57.4 bits (137), Expect = 3e-06
Identities = 53/116 (45%), Positives = 61/116 (52%), Gaps = 34/116 (29%)
Frame = +1
Query: 190 MEKGG--KGFSLPTKGLKSSLKSTAKGTLKGKDDNPAKL--GRKVQFNSEG*C------- 336
MEKGG KG + G K+SLKS +L GKDDN AK GRKVQFN+EG
Sbjct: 1 MEKGGGGKGGGVGGGG-KTSLKSIPT-SLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFS 58
Query: 337 -----------------KRDKGDKVSNDGKA---KES-PLELKIEQELPK--KCQM 435
K KGDKV+N K KE+ PLEL++EQELPK KC M
Sbjct: 59 SKSDGKFETTCGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLM 114
>gb|ESR63230.1| hypothetical protein CICLE_v10016499mg [Citrus clementina]
Length = 237
Score = 93.2 bits (230), Expect = 4e-17
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + KNAKC+MDCEAA IL+GIQEQM LLS DPTIK+PVSFD+GL YAKT + +T+P
Sbjct: 101 RVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNP 160
Query: 581 QSV 589
Q+V
Sbjct: 161 QAV 163
Score = 57.4 bits (137), Expect = 3e-06
Identities = 53/116 (45%), Positives = 61/116 (52%), Gaps = 34/116 (29%)
Frame = +1
Query: 190 MEKGG--KGFSLPTKGLKSSLKSTAKGTLKGKDDNPAKL--GRKVQFNSEG*C------- 336
MEKGG KG + G K+SLKS +L GKDDN AK GRKVQFN+EG
Sbjct: 1 MEKGGGGKGGGVGGGG-KTSLKSIPT-SLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFS 58
Query: 337 -----------------KRDKGDKVSNDGKA---KES-PLELKIEQELPK--KCQM 435
K KGDKV+N K KE+ PLEL++EQELPK KC M
Sbjct: 59 SKSDGKFETTCGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLM 114
>gb|ESR63229.1| hypothetical protein CICLE_v10016499mg [Citrus clementina]
Length = 176
Score = 93.2 bits (230), Expect = 4e-17
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + KNAKC+MDCEAA IL+GIQEQM LLS DPTIK+PVSFD+GL YAKT + +T+P
Sbjct: 101 RVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNP 160
Query: 581 QSV 589
Q+V
Sbjct: 161 QAV 163
Score = 57.4 bits (137), Expect = 3e-06
Identities = 53/116 (45%), Positives = 61/116 (52%), Gaps = 34/116 (29%)
Frame = +1
Query: 190 MEKGG--KGFSLPTKGLKSSLKSTAKGTLKGKDDNPAKL--GRKVQFNSEG*C------- 336
MEKGG KG + G K+SLKS +L GKDDN AK GRKVQFN+EG
Sbjct: 1 MEKGGGGKGGGVGGGG-KTSLKSIPT-SLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFS 58
Query: 337 -----------------KRDKGDKVSNDGKA---KES-PLELKIEQELPK--KCQM 435
K KGDKV+N K KE+ PLEL++EQELPK KC M
Sbjct: 59 SKSDGKFETTCGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLM 114
>ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera] gi|359495604|ref|XP_003635035.1| PREDICTED:
uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera] gi|297736694|emb|CBI25730.3| unnamed protein
product [Vitis vinifera]
Length = 239
Score = 91.3 bits (225), Expect = 2e-16
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + KNAKCMMDCEAA IL+GIQEQMV+LS DPTIK+P+SF++GLQYA++ Y SP
Sbjct: 102 RIEQELPKNAKCMMDCEAALILKGIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASP 161
Query: 581 QSV 589
QSV
Sbjct: 162 QSV 164
>ref|XP_004293416.1| PREDICTED: uncharacterized protein LOC101305540 [Fragaria vesca
subsp. vesca]
Length = 196
Score = 89.4 bits (220), Expect = 6e-16
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
KL K AKC+MDCEAA ILQG+Q+ MV+LS+DP+IKLPVSFDR LQY + YT P
Sbjct: 79 KLENELPKGAKCLMDCEAADILQGVQDHMVILSKDPSIKLPVSFDRALQYTEKSTNYTDP 138
Query: 581 QSV 589
+SV
Sbjct: 139 ESV 141
Score = 58.9 bits (141), Expect = 9e-07
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Frame = +1
Query: 193 EKGGKGFSLPTKGLKSSLKSTAK-GTLKGKDDNPAKLG--RKVQFNSEG*CKRD----KG 351
+KGGKGF+ KG KS+ K T KGKDD PAK R VQF+S+ KG
Sbjct: 3 DKGGKGFTAVPKGKGKGGKSSLKEATPKGKDDGPAKSKKTRNVQFSSQAAASTKANSGKG 62
Query: 352 DKVSNDGKAKESPLELKIEQELPK--KCQM 435
+ K + PL+LK+E ELPK KC M
Sbjct: 63 GQADGGAKKDKEPLQLKLENELPKGAKCLM 92
>gb|ESQ39939.1| hypothetical protein EUTSA_v10001026mg [Eutrema salsugineum]
Length = 208
Score = 87.8 bits (216), Expect = 2e-15
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +2
Query: 332 NVSGIKETRFQTMGRQKNHH-LN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDP 508
+ G K T + + R K L K + +NAKC+MDCEA QIL+GI+EQ+ +LS DP
Sbjct: 62 SAKGGKGTNAKKITRSKESQPLELKTEKELPENAKCLMDCEAFQILEGIKEQLAVLSDDP 121
Query: 509 TIKLPVSFDRGLQYAKTGARYTSPQS 586
+IK+PVSF+RGL+Y K G+ YT+PQS
Sbjct: 122 SIKIPVSFNRGLEYLKLGSCYTNPQS 147
>gb|EOY29038.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 4,
partial [Theobroma cacao]
Length = 182
Score = 87.4 bits (215), Expect = 2e-15
Identities = 41/63 (65%), Positives = 51/63 (80%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + +N KC+MDCEAA IL+GIQEQMV+LS+D TIKLP SF GLQYAKT + YT+P
Sbjct: 106 RVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRSYYTNP 165
Query: 581 QSV 589
QSV
Sbjct: 166 QSV 168
Score = 66.6 bits (161), Expect = 4e-09
Identities = 55/117 (47%), Positives = 62/117 (52%), Gaps = 36/117 (30%)
Frame = +1
Query: 193 EKGGKGFSLPTKGL-KSSLKST-AKGTLK-GKDDNPA--KLGRKVQFNSEG--------- 330
EKGGKGFSLPTK KS+LKST A T + GKDDN A K GRKVQF EG
Sbjct: 3 EKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRGRKVQFGMEGLPNLGFNFS 62
Query: 331 ----------------*CKRDKGDKVSNDGKA----KESPLELKIEQELPK--KCQM 435
K KG+KV N GKA + LEL++EQELP+ KC M
Sbjct: 63 SPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKSLELRVEQELPENVKCLM 119
>gb|EOY29037.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 3,
partial [Theobroma cacao]
Length = 214
Score = 87.4 bits (215), Expect = 2e-15
Identities = 41/63 (65%), Positives = 51/63 (80%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + +N KC+MDCEAA IL+GIQEQMV+LS+D TIKLP SF GLQYAKT + YT+P
Sbjct: 104 RVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRSYYTNP 163
Query: 581 QSV 589
QSV
Sbjct: 164 QSV 166
Score = 65.1 bits (157), Expect = 1e-08
Identities = 51/115 (44%), Positives = 57/115 (49%), Gaps = 34/115 (29%)
Frame = +1
Query: 193 EKGGKGFSLPTKGL-KSSLKSTAKGTLKGKDDNPA--KLGRKVQFNSEG----------- 330
EKGGKGFSLPTK KS+LKST DDN A K GRKVQF EG
Sbjct: 3 EKGGKGFSLPTKTTPKSALKSTPASATARHDDNSAKSKRGRKVQFGMEGLPNLGFNFSSP 62
Query: 331 --------------*CKRDKGDKVSNDGKA----KESPLELKIEQELPK--KCQM 435
K KG+KV N GKA + LEL++EQELP+ KC M
Sbjct: 63 KSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKSLELRVEQELPENVKCLM 117
>gb|EOY29035.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 1
[Theobroma cacao] gi|508781780|gb|EOY29036.1|
DNA-directed RNA polymerase II subunit rpb4, putative
isoform 1 [Theobroma cacao]
Length = 231
Score = 87.4 bits (215), Expect = 2e-15
Identities = 41/63 (65%), Positives = 51/63 (80%)
Frame = +2
Query: 401 KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGARYTSP 580
++ + +N KC+MDCEAA IL+GIQEQMV+LS+D TIKLP SF GLQYAKT + YT+P
Sbjct: 106 RVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRSYYTNP 165
Query: 581 QSV 589
QSV
Sbjct: 166 QSV 168
Score = 66.6 bits (161), Expect = 4e-09
Identities = 55/117 (47%), Positives = 62/117 (52%), Gaps = 36/117 (30%)
Frame = +1
Query: 193 EKGGKGFSLPTKGL-KSSLKST-AKGTLK-GKDDNPA--KLGRKVQFNSEG--------- 330
EKGGKGFSLPTK KS+LKST A T + GKDDN A K GRKVQF EG
Sbjct: 3 EKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRGRKVQFGMEGLPNLGFNFS 62
Query: 331 ----------------*CKRDKGDKVSNDGKA----KESPLELKIEQELPK--KCQM 435
K KG+KV N GKA + LEL++EQELP+ KC M
Sbjct: 63 SPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKSLELRVEQELPENVKCLM 119
>ref|XP_004486378.1| PREDICTED: uncharacterized protein LOC101499719 isoform X2 [Cicer
arietinum]
Length = 193
Score = 87.0 bits (214), Expect = 3e-15
Identities = 38/68 (55%), Positives = 54/68 (79%)
Frame = +2
Query: 386 HHLN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGA 565
H ++ + +N KC+MDCEAA ILQGIQ+ MV+LSRDP+IK+PVSFD+GL YAK+ +
Sbjct: 63 HQFEHRVDQGLPENFKCLMDCEAAVILQGIQDHMVMLSRDPSIKIPVSFDKGLSYAKSSS 122
Query: 566 RYTSPQSV 589
+Y++ +SV
Sbjct: 123 KYSNHESV 130
>ref|XP_004486377.1| PREDICTED: uncharacterized protein LOC101499719 isoform X1 [Cicer
arietinum]
Length = 240
Score = 87.0 bits (214), Expect = 3e-15
Identities = 38/68 (55%), Positives = 54/68 (79%)
Frame = +2
Query: 386 HHLN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTGA 565
H ++ + +N KC+MDCEAA ILQGIQ+ MV+LSRDP+IK+PVSFD+GL YAK+ +
Sbjct: 110 HQFEHRVDQGLPENFKCLMDCEAAVILQGIQDHMVMLSRDPSIKIPVSFDKGLSYAKSSS 169
Query: 566 RYTSPQSV 589
+Y++ +SV
Sbjct: 170 KYSNHESV 177
>ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 86.3 bits (212), Expect = 5e-15
Identities = 37/69 (53%), Positives = 54/69 (78%)
Frame = +2
Query: 383 NHHLN*KLSRNFQKNAKCMMDCEAAQILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAKTG 562
+H + ++ + +N KC+MDCEA ILQGIQE+MV+LSRD T+K+P+SFD+GLQYAK+
Sbjct: 80 SHPSDYRVDQKLPENIKCLMDCEAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSN 139
Query: 563 ARYTSPQSV 589
++Y QS+
Sbjct: 140 SKYLDLQSI 148
>gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 85.9 bits (211), Expect = 7e-15
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Frame = +2
Query: 290 LQSLEGKFSSILKVNVSGIKETRFQTMGRQKN----HHLN*KLSRNFQKNAKCMMDCEAA 457
+Q EG F S SG K + G+ H ++ + +N KC+MDCEAA
Sbjct: 33 VQFSEGLFESRSNGPTSGGKGDKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAA 92
Query: 458 QILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAK--TGARYTSPQSV 589
+LQGIQ+QMV LSRDP+IK+P SFD+GL YAK + ++Y++P+SV
Sbjct: 93 VMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESV 138
>ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4
[Medicago truncatula] gi|355483391|gb|AES64594.1|
DNA-directed RNA polymerase II subunit rpb4 [Medicago
truncatula]
Length = 223
Score = 85.9 bits (211), Expect = 7e-15
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Frame = +2
Query: 290 LQSLEGKFSSILKVNVSGIKETRFQTMGRQKN----HHLN*KLSRNFQKNAKCMMDCEAA 457
+Q EG F S SG K + G+ H ++ + +N KC+MDCEAA
Sbjct: 55 VQFSEGLFESRSNGPTSGGKGDKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAA 114
Query: 458 QILQGIQEQMVLLSRDPTIKLPVSFDRGLQYAK--TGARYTSPQSV 589
+LQGIQ+QMV LSRDP+IK+P SFD+GL YAK + ++Y++P+SV
Sbjct: 115 VMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESV 160