BLASTX nr result
ID: Jatropha_contig00037322
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00037322
(612 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720103.1| rpoC1 [Jatropha curcas] gi|224979556|gb|ACN7... 392 e-107
ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus co... 390 e-106
ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasilie... 388 e-106
ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot escule... 388 e-106
ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subun... 386 e-105
ref|YP_538839.1| RNA polymerase beta' subunit [Solanum bulbocast... 386 e-105
ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna... 386 e-105
emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna] 386 e-105
ref|NP_054487.1| RNA polymerase beta' subunit [Nicotiana tabacum... 386 e-105
ref|YP_006666021.1| RNA polymerase beta' subunit (chloroplast) [... 386 e-105
ref|YP_006503782.1| RNA polymerase beta' subunit (chloroplast) [... 386 e-105
ref|XP_006356781.1| PREDICTED: DNA-directed RNA polymerase subun... 386 e-105
sp|Q2MIJ6.2|RPOC1_SOLBU RecName: Full=DNA-directed RNA polymeras... 386 e-105
sp|Q3C1G8.2|RPOC1_NICSY RecName: Full=DNA-directed RNA polymeras... 386 e-105
prf||1211235Q rpoC-like ORF 548 386 e-105
sp|P12116.1|RPOC1_TOBAC RecName: Full=DNA-directed RNA polymeras... 386 e-105
gb|AAV74362.1| RpoC1 [Acorus gramineus] 386 e-105
gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus] 386 e-105
ref|YP_319756.1| RNA polymerase beta' subunit [Acorus calamus] g... 386 e-105
ref|YP_003359350.2| RNA polymerase beta I subunit (chloroplast) ... 386 e-105
>ref|YP_002720103.1| rpoC1 [Jatropha curcas] gi|224979556|gb|ACN72683.1| rpoC1 [Jatropha
curcas]
Length = 680
Score = 392 bits (1006), Expect = e-107
Identities = 196/196 (100%), Positives = 196/196 (100%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus communis]
gi|339516156|gb|AEJ82546.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 654
Score = 390 bits (1001), Expect = e-106
Identities = 195/196 (99%), Positives = 195/196 (99%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 321 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 380
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 381 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 440
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 441 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 500
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 501 PISVPTQDMLIGLYVL 516
>ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasiliensis]
gi|308523495|gb|ADO33545.1| RNA polymerase beta' subunit
[Hevea brasiliensis]
Length = 680
Score = 388 bits (996), Expect = e-106
Identities = 194/196 (98%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL EVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILHEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot esculenta]
gi|212288297|sp|B1NWE1.1|RPOC1_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|157695876|gb|ABV66145.1| RNA polymerase beta [Manihot
esculenta]
Length = 680
Score = 388 bits (996), Expect = e-106
Identities = 194/196 (98%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL EVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILHEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like [Solanum
tuberosum]
Length = 581
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 247 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 306
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 307 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 366
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 367 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 426
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 427 PISVPTQDMLIGLYVL 442
>ref|YP_538839.1| RNA polymerase beta' subunit [Solanum bulbocastanum]
gi|108773121|ref|YP_635630.1| RNA polymerase beta'
subunit [Solanum tuberosum]
gi|544163604|ref|YP_008563079.1| RNA polymerase beta
subunit (chloroplast) [Solanum lycopersicum]
gi|544170662|ref|AP_004919.1| RNA polymerase beta' chain
(chloroplast) [Solanum lycopersicum]
gi|84371886|gb|ABC56204.1| RNA polymerase beta subunit
[Solanum bulbocastanum] gi|84371974|gb|ABC56291.1| RNA
polymerase beta subunit [Solanum lycopersicum]
gi|88656795|gb|ABD47048.1| RNA polymerase beta [Solanum
tuberosum] gi|89241662|emb|CAJ32384.1| RNA polymerase
beta' chain [Solanum lycopersicum]
Length = 688
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna]
gi|41018086|sp|Q8S8Y0.2|RPOC1_ATRBE RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 681
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna]
Length = 688
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>ref|NP_054487.1| RNA polymerase beta' subunit [Nicotiana tabacum]
gi|78102522|ref|YP_358663.1| RNA polymerase beta'
subunit [Nicotiana sylvestris]
gi|2924259|emb|CAA77411.1| RNA polymerase beta' subunit
[Nicotiana tabacum] gi|77799549|dbj|BAE46638.1| RNA
polymerase beta' subunit [Nicotiana sylvestris]
Length = 688
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>ref|YP_006666021.1| RNA polymerase beta' subunit (chloroplast) [Capsicum annuum]
gi|401065923|gb|AFP90767.1| RNA polymerase beta' subunit
(chloroplast) [Capsicum annuum]
Length = 688
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>ref|YP_006503782.1| RNA polymerase beta' subunit (chloroplast) [Datura stramonium]
gi|350996417|gb|AEQ36929.1| RNA polymerase beta' subunit
(chloroplast) [Datura stramonium]
gi|350996504|gb|AEQ37015.1| RNA polymerase beta' subunit
[Datura stramonium]
Length = 688
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>ref|XP_006356781.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like [Solanum
tuberosum] gi|329124573|gb|AEB72130.1| RNA polymerase
beta (chloroplast) [Solanum tuberosum]
gi|329124660|gb|AEB72216.1| RNA polymerase beta
(chloroplast) [Solanum tuberosum]
Length = 688
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>sp|Q2MIJ6.2|RPOC1_SOLBU RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|125987653|sp|Q2MIA9.2|RPOC1_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 681
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>sp|Q3C1G8.2|RPOC1_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 681
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>prf||1211235Q rpoC-like ORF 548
Length = 548
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 214 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 273
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 274 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 333
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 334 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 393
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 394 PISVPTQDMLIGLYVL 409
>sp|P12116.1|RPOC1_TOBAC RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 680
Score = 386 bits (992), Expect = e-105
Identities = 192/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 346 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 405
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 406 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 465
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 466 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 525
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 526 PISVPTQDMLIGLYVL 541
>gb|AAV74362.1| RpoC1 [Acorus gramineus]
Length = 689
Score = 386 bits (991), Expect = e-105
Identities = 191/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 533
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 534 PISVPTQDMLIGLYVL 549
>gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus]
Length = 696
Score = 386 bits (991), Expect = e-105
Identities = 191/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 361 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 420
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 421 QTFVIRGLIRQHLASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 480
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 481 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 540
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 541 PISVPTQDMLIGLYVL 556
>ref|YP_319756.1| RNA polymerase beta' subunit [Acorus calamus]
gi|161622301|ref|YP_001586173.1| RNA polymerase beta'
subunit [Acorus americanus]
gi|90110994|sp|Q3V543.1|RPOC1_ACOCL RecName:
Full=DNA-directed RNA polymerase subunit gamma;
Short=RNAP subunit gamma; AltName: Full=RNA polymerase
subunit gamma; AltName: Full=Transcriptase subunit gamma
gi|212288453|sp|A9LYH6.1|RPOC1_ACOAM RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|74381700|emb|CAI53785.1| RNA polymerase beta'
subunit-1 [Acorus calamus] gi|160369844|gb|ABX38735.1|
RNA polymerase beta' subunit [Acorus americanus]
Length = 682
Score = 386 bits (991), Expect = e-105
Identities = 191/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 565 PISVPTQDMLIGLYVL 612
PISVPTQDMLIGLYVL
Sbjct: 527 PISVPTQDMLIGLYVL 542
>ref|YP_003359350.2| RNA polymerase beta I subunit (chloroplast) [Olea europaea]
gi|363413082|gb|ADA69917.2| RNA polymerase beta I
subunit (chloroplast) [Olea europaea]
Length = 685
Score = 386 bits (991), Expect = e-105
Identities = 191/196 (97%), Positives = 194/196 (98%)
Frame = +1
Query: 25 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 204
DGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 349 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 408
Query: 205 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 384
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 409 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 468
Query: 385 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 564
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGD
Sbjct: 469 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 528
Query: 565 PISVPTQDMLIGLYVL 612
PIS+PTQDMLIGLYVL
Sbjct: 529 PISIPTQDMLIGLYVL 544