BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00035905
         (515 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...   105   6e-27
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   116   1e-26
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    99   1e-24
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   100   1e-24
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    99   1e-24
emb|CBI26821.3| unnamed protein product [Vitis vinifera]              100   1e-24
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   100   4e-24
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    99   1e-23
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       98   1e-23
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       98   8e-23
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...    89   1e-22
emb|CBI26820.3| unnamed protein product [Vitis vinifera]               89   1e-22
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   105   5e-21
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...    99   7e-21
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...    99   7e-21
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...    97   9e-21
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...    94   8e-20
gb|ESQ35322.1| hypothetical protein EUTSA_v10006629mg [Eutrema s...    95   2e-19
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...    92   3e-19
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]        87   4e-19

>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  105 bits (261), Expect(2) = 6e-27
 Identities = 58/93 (62%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V  FP +V  +EVK  LE ++G  TV+A+KIR+ KNGG R YAIVQF  + DAE
Sbjct: 1   MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 59

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
           LII L N+RL YG+SYLKAR +  DIVP PRTF
Sbjct: 60  LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTF 92



 Score = 41.2 bits (95), Expect(2) = 6e-27
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLH+M+ +TLHFGC++S EKF
Sbjct: 89  PRTFLHTMEGVTLHFGCQVSNEKF 112


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score =  116 bits (290), Expect(2) = 1e-26
 Identities = 60/93 (64%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTIH+ GFP  VT D VK  LE H+G GTV+A+K+R  K GG R YAIVQF +A  AE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
           LIISL N+RL YG+SYLKAR    DIVP PRT+
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTY 93



 Score = 29.3 bits (64), Expect(2) = 1e-26
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  ++++++ + L FGC++S EKF
Sbjct: 90  PRTYMYTLEELLLCFGCQVSTEKF 113


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
           arietinum]
          Length = 1126

 Score = 99.4 bits (246), Expect(2) = 1e-24
 Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 4/94 (4%)
 Frame = +1

Query: 181 KTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAELI 360
           KTI +YGFP  V V +VK+ +E  +G+G+V A+KIRE K   QR YAI+QF TA  A  +
Sbjct: 5   KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQRAYAIIQFNTANQATHM 64

Query: 361 ISLNKR----LRYGTSYLKARTLAKDIVPNPRTF 450
           +SL+ R    LRYG SYLK R + +DIVPNPRT+
Sbjct: 65  LSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTY 98



 Score = 39.3 bits (90), Expect(2) = 1e-24
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKFS 514
           P  +L S+D +TL+FGC+ISKE+FS
Sbjct: 95  PRTYLESLDDVTLYFGCQISKERFS 119


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 99.8 bits (247), Expect(2) = 1e-24
 Identities = 49/92 (53%), Positives = 69/92 (75%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI VYG P +V+ +E+K+ LE ++G+GT+ A++I++ K+G    +A VQF + R AE
Sbjct: 1   MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 355 LIISLNKRLRYGTSYLKARTLAKDIVPNPRTF 450
           LIISL K+L YG +YLKAR +  DI+P PRTF
Sbjct: 61  LIISLAKQLWYGGNYLKAREMDLDIIPKPRTF 92



 Score = 38.9 bits (89), Expect(2) = 1e-24
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLHSMD ITLHFG ++S E+F
Sbjct: 89  PRTFLHSMDRITLHFGYQMSNERF 112


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
           arietinum]
          Length = 1100

 Score = 99.4 bits (246), Expect(2) = 1e-24
 Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 4/94 (4%)
 Frame = +1

Query: 181 KTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAELI 360
           KTI +YGFP  V V +VK+ +E  +G+G+V A+KIRE K   QR YAI+QF TA  A  +
Sbjct: 5   KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQRAYAIIQFNTANQATHM 64

Query: 361 ISLNKR----LRYGTSYLKARTLAKDIVPNPRTF 450
           +SL+ R    LRYG SYLK R + +DIVPNPRT+
Sbjct: 65  LSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTY 98



 Score = 39.3 bits (90), Expect(2) = 1e-24
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKFS 514
           P  +L S+D +TL+FGC+ISKE+FS
Sbjct: 95  PRTYLESLDDVTLYFGCQISKERFS 119


>emb|CBI26821.3| unnamed protein product [Vitis vinifera]
          Length = 943

 Score = 99.8 bits (247), Expect(2) = 1e-24
 Identities = 49/92 (53%), Positives = 69/92 (75%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI VYG P +V+ +E+K+ LE ++G+GT+ A++I++ K+G    +A VQF + R AE
Sbjct: 1   MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 355 LIISLNKRLRYGTSYLKARTLAKDIVPNPRTF 450
           LIISL K+L YG +YLKAR +  DI+P PRTF
Sbjct: 61  LIISLAKQLWYGGNYLKAREMDLDIIPKPRTF 92



 Score = 38.9 bits (89), Expect(2) = 1e-24
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLHSMD ITLHFG ++S E+F
Sbjct: 89  PRTFLHSMDRITLHFGYQMSNERF 112


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
           subsp. vesca]
          Length = 1119

 Score =  100 bits (250), Expect(2) = 4e-24
 Identities = 55/93 (59%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI ++GFP   T + +K+ LE H+G+G+VFA+K+R  K+GG R YAI+QFQ+   AE
Sbjct: 1   MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGG-RFYAIIQFQSISQAE 59

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
            IISL N RL YG SYL AR  A DIVP PRTF
Sbjct: 60  KIISLANARLWYGRSYLNARP-AHDIVPKPRTF 91



 Score = 36.2 bits (82), Expect(2) = 4e-24
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKFS 514
           P  FLHS+  + LH GC+++K+KFS
Sbjct: 88  PRTFLHSLRDLVLHVGCQVAKDKFS 112


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score = 99.0 bits (245), Expect(2) = 1e-23
 Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 4/96 (4%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI +YGFP  V V +VK  +E ++G+GTVFA+K+R  K    R +AI+QF TA  A 
Sbjct: 1   MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60

Query: 355 LIIS----LNKRLRYGTSYLKARTLAKDIVPNPRTF 450
            ++S    + + LRYGTSYLKAR + +DIVP PR F
Sbjct: 61  SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVF 96



 Score = 36.6 bits (83), Expect(2) = 1e-23
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKFS 514
           P  FLHS+D + L FGC+ISK +FS
Sbjct: 93  PRVFLHSLDDVKLSFGCQISKGRFS 117


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 97.8 bits (242), Expect(2) = 1e-23
 Identities = 55/93 (59%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI VYGF  DV+  EVK  LE ++G  TV+A+KIR+ K  G R +AIVQF  + DA 
Sbjct: 1   MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
           LII L N+RL YG SYLKAR +  DIVP PR F
Sbjct: 60  LIIRLANQRLYYGRSYLKAREMETDIVPKPRVF 92



 Score = 37.7 bits (86), Expect(2) = 1e-23
 Identities = 13/24 (54%), Positives = 21/24 (87%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLH+M+ +T++FGC++S+EKF
Sbjct: 89  PRVFLHTMERVTVNFGCQVSEEKF 112


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 97.8 bits (242), Expect(2) = 8e-23
 Identities = 55/93 (59%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI VYGF  DV+  EVK  LE ++G  TV+A+KIR+ K  G R +AIVQF  + DA 
Sbjct: 1   MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
           LII L N+RL YG SYLKAR +  DIVP PR F
Sbjct: 60  LIIRLANQRLYYGRSYLKAREMETDIVPKPRVF 92



 Score = 34.7 bits (78), Expect(2) = 8e-23
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLH+M+ +T++F C +S+EKF
Sbjct: 89  PRVFLHTMERVTVNFDCHVSEEKF 112


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 89.4 bits (220), Expect(2) = 1e-22
 Identities = 44/93 (47%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           M KTI VYGFP  V+ DE+K+ LE ++G+GT+ A++I++ ++G    +A VQF +   AE
Sbjct: 1   MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
            II+L  K++ YG +YLKAR +  DI+P PR F
Sbjct: 61  FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAF 93



 Score = 42.7 bits (99), Expect(2) = 1e-22
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLHSMD ITLHFGC++S E+F
Sbjct: 90  PRAFLHSMDRITLHFGCQMSDERF 113


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 89.4 bits (220), Expect(2) = 1e-22
 Identities = 44/93 (47%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           M KTI VYGFP  V+ DE+K+ LE ++G+GT+ A++I++ ++G    +A VQF +   AE
Sbjct: 1   MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
            II+L  K++ YG +YLKAR +  DI+P PR F
Sbjct: 61  FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAF 93



 Score = 42.7 bits (99), Expect(2) = 1e-22
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P  FLHSMD ITLHFGC++S E+F
Sbjct: 90  PRAFLHSMDRITLHFGCQMSDERF 113


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  105 bits (263), Expect = 5e-21
 Identities = 60/109 (55%), Positives = 70/109 (64%), Gaps = 7/109 (6%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           M KT+ V GFP   T   V+  LESH+G GTV A+KIRE + GG RKYAIVQF T R AE
Sbjct: 1   MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFF------TQHGPYNTA 480
            IISL N RL YG SYL AR + +DI+P PR+F       T H  Y T+
Sbjct: 61  QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTS 109


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 99.0 bits (245), Expect(2) = 7e-21
 Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  V+ +EVKK LE  +G GTV+A+K+R+ K GG R YAIVQF + R   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 355 LII-SLNKRLRYGTSYLKARTLAKDIVPNPR 444
           LII +  +RL YG SYLKA  + +DIVP PR
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPR 91



 Score = 26.9 bits (58), Expect(2) = 7e-21
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P   LH++  + + FGC++S +KF
Sbjct: 90  PRASLHTISGLKMFFGCQVSTKKF 113


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 99.0 bits (245), Expect(2) = 7e-21
 Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  V+ +EVKK LE  +G GTV+A+K+R+ K GG R YAIVQF + R   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 355 LII-SLNKRLRYGTSYLKARTLAKDIVPNPR 444
           LII +  +RL YG SYLKA  + +DIVP PR
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPR 91



 Score = 26.9 bits (58), Expect(2) = 7e-21
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P   LH++  + + FGC++S +KF
Sbjct: 90  PRASLHTISGLKMFFGCQVSTKKF 113


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
           gi|482575337|gb|EOA39524.1| hypothetical protein
           CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 97.4 bits (241), Expect(2) = 9e-21
 Identities = 51/91 (56%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  V  D+VK  LE  +G GTV+A+K+R+ K GG R +AIVQF + R A 
Sbjct: 1   MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHAR 60

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPR 444
           LII++  +RL YG SYLKA  + +DIVP PR
Sbjct: 61  LIITMAAERLYYGRSYLKAFEMEQDIVPKPR 91



 Score = 28.1 bits (61), Expect(2) = 9e-21
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEK 508
           P   LHS+ ++ ++FGC++S +K
Sbjct: 90  PRASLHSISNLKMYFGCQVSPKK 112


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 94.0 bits (232), Expect(2) = 8e-20
 Identities = 50/92 (54%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  V+ +EVKK LE  +G GTV+A+K+R+ K GG R +AIVQF   R A 
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60

Query: 355 LII--SLNKRLRYGTSYLKARTLAKDIVPNPR 444
            II  +  +RL YG SYL A  + +DIVP PR
Sbjct: 61  QIITGAAERRLYYGRSYLNAFEVDQDIVPKPR 92



 Score = 28.5 bits (62), Expect(2) = 8e-20
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P   LH++  + ++FGC++S +KF
Sbjct: 91  PRASLHNISGLKMYFGCQVSTQKF 114


>gb|ESQ35322.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score = 94.7 bits (234), Expect(2) = 2e-19
 Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  V+ +EVK  LE  +G GTV+A+K+R+ K GG R YAIVQF   R A 
Sbjct: 1   MGKTIRVFGFPGGVSGEEVKNFLERETGSGTVYAIKVRQPKKGGPRVYAIVQFTNERHAR 60

Query: 355 LIIS-LNKRLRYGTSYLKARTLAKDIVPNPR 444
            II+   + L YG SYLKA  + +DIVP PR
Sbjct: 61  WIITRAEEGLYYGRSYLKASEVEQDIVPKPR 91



 Score = 26.2 bits (56), Expect(2) = 2e-19
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKFS 514
           P   LH +  + ++FGC+++ +K S
Sbjct: 90  PRASLHKISDLKIYFGCQVTPKKLS 114


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score = 92.0 bits (227), Expect(2) = 3e-19
 Identities = 49/92 (53%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  V+ +EVKK LE  +G GTV+A+K+R+ K GG R +AIVQF   R A 
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60

Query: 355 LII--SLNKRLRYGTSYLKARTLAKDIVPNPR 444
            II  +  + L YG SYL A  + +DIVP PR
Sbjct: 61  QIITGAAERSLYYGRSYLNAFEVEQDIVPKPR 92



 Score = 28.5 bits (62), Expect(2) = 3e-19
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKF 511
           P   LH++  + ++FGC++S +KF
Sbjct: 91  PRASLHNISGLKMYFGCQVSTQKF 114


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 87.4 bits (215), Expect(2) = 4e-19
 Identities = 48/93 (51%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 354
           MGKTI V+GFP  ++ + VKK LE+H+G+GTV+A++++++K GG+R +A VQF   + AE
Sbjct: 1   MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSK-GGRRAFAKVQFANNKSAE 59

Query: 355 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTF 450
            II L +K L YG SYLKA  +  DIV  PRT+
Sbjct: 60  FIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTY 91



 Score = 32.7 bits (73), Expect(2) = 4e-19
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 440 PERFLHSMDHITLHFGCRISKEKFS 514
           P  ++  MD +TL+FGC+IS +KF+
Sbjct: 88  PRTYVEHMDGVTLNFGCQISDKKFA 112