BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00024702
         (759 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   404   e-110
gb|EEE97240.2| plus-3 domain-containing family protein [Populus ...   370   e-100
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]      369   e-100
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao...   366   4e-99
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   363   4e-98
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   362   5e-98
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   358   1e-96
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe...   358   1e-96
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus...   352   6e-95
gb|ESR36142.1| hypothetical protein CICLE_v10028000mg [Citrus cl...   352   7e-95
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   347   3e-93
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   343   3e-92
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   338   1e-90
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   331   1e-88
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   331   2e-88
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein...   328   1e-87
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...   324   2e-86
gb|ERN15034.1| hypothetical protein AMTR_s00032p00242160 [Ambore...   322   8e-86
gb|ESQ29352.1| hypothetical protein EUTSA_v10023338mg [Eutrema s...   321   1e-85
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   320   3e-85

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  404 bits (1038), Expect = e-110
 Identities = 203/221 (91%), Positives = 208/221 (94%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDRPYKLENKTTYKYLNVIWGNESSAARWQMAM+SDSAPTEDEYKQWVREVERSGGRMPT
Sbjct: 330 PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPT 389

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQDILEKKEAI+KSNTFVYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRELEVAQ KQD
Sbjct: 390 KQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQD 449

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           DAEVERIRARIQELEASRQ Q KDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA
Sbjct: 450 DAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 509

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSN 685
           GYDPFSRRWTRSRNYYVSKP G D AA  NN  +  VA +N
Sbjct: 510 GYDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVAN 550


>gb|EEE97240.2| plus-3 domain-containing family protein [Populus trichocarpa]
          Length = 664

 Score =  370 bits (951), Expect = e-100
 Identities = 186/224 (83%), Positives = 202/224 (90%), Gaps = 3/224 (1%)
 Frame = +2

Query: 23   PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
            PD+PYKLENK+TYKYLNV WG +SSAARWQMAMVSDSAPTE+EYKQWVRE ER GGR+P+
Sbjct: 333  PDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPS 392

Query: 203  KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
            KQDILEKKEAI+KSNTFVYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRELE+AQ + D
Sbjct: 393  KQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHD 452

Query: 383  DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            +AEVERI ARI ELEASRQA+ KDAKA+RLAEMNRKNR ENFRNASELKP+NT LKAGEA
Sbjct: 453  EAEVERIEARILELEASRQAKVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEA 512

Query: 563  GYDPFSRRWTRSRNYYVSKPGGADVAAEANN---NGTAAVAHSN 685
            GYDPFSRRWTRSRNYYVS P G D A  A+N   N TAAVA S+
Sbjct: 513  GYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEANDTAAVADSD 556


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
          Length = 664

 Score =  369 bits (948), Expect = e-100
 Identities = 185/224 (82%), Positives = 202/224 (90%), Gaps = 3/224 (1%)
 Frame = +2

Query: 23   PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
            PD+PYKLENK+TYKYLNV WG +SSAARWQMAMVSDSAPTE+EYKQWVRE ER GGR+P+
Sbjct: 333  PDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPS 392

Query: 203  KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
            KQDILEKKEAI+KSNTFVYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRELE+AQ + D
Sbjct: 393  KQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHD 452

Query: 383  DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            +AEVERI ARI ELEASRQA+ KDAKA+RLAEMNRKNR ENFRNASELKP+NT LKAGEA
Sbjct: 453  EAEVERIEARILELEASRQAKVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEA 512

Query: 563  GYDPFSRRWTRSRNYYVSKPGGADVAAEANN---NGTAAVAHSN 685
            GYDPFSRRWTRSRNYYVS P G D A  A+N   N TAA+A S+
Sbjct: 513  GYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEANDTAALADSD 556


>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
           gi|508781058|gb|EOY28314.1| PAF1 complex component
           isoform 1 [Theobroma cacao]
          Length = 660

 Score =  366 bits (940), Expect = 4e-99
 Identities = 176/222 (79%), Positives = 202/222 (90%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           P+R YKLENKTTYKYLNV+WGNESSAARWQMAM+SDS P E+E++Q +RE+ERSGGRMP+
Sbjct: 332 PERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPS 391

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKKEA++K+ TFVYSAATVKQMLQEKKS S+RPLN+AAEKDRLRR+LE+AQ K D
Sbjct: 392 KQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHD 451

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+ R+Q+LEASRQAQEKDAKA+RLAEMNRKNRAENF+NASELKPVNT LKAGEA
Sbjct: 452 EAEVERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEA 511

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG 688
           GYDPFSRRWTRSRNYYV+KP GAD AA AN +    +A  NG
Sbjct: 512 GYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNG 553


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  363 bits (931), Expect = 4e-98
 Identities = 178/222 (80%), Positives = 200/222 (90%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKLENKTTYKYLNV+WGNESSAARWQMAMVSDSAP E+E+KQWV+EV+RSGGRMP+
Sbjct: 328 PDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPS 387

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKK+AI+K+ TFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELE+AQ K D
Sbjct: 388 KQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYD 447

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+ R+ ELEASRQA++KDAKA++LAEMNRKNR ENF+NASE+KPVNT LKAGEA
Sbjct: 448 EAEVERIKTRLLELEASRQAKQKDAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEA 507

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG 688
           GYDPFSRRWTRSRNYY +KPG    A   + NG  A A SNG
Sbjct: 508 GYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNG 549


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  362 bits (930), Expect = 5e-98
 Identities = 185/224 (82%), Positives = 201/224 (89%), Gaps = 3/224 (1%)
 Frame = +2

Query: 23   PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
            PD+PYKLENK+TYKYLNV WG ++SAARWQMAMVSDS PTE+EYKQWVREVE  GGR+P+
Sbjct: 331  PDKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPS 390

Query: 203  KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
            KQDILEKKEAI+KSNTFVYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRELE+AQ K D
Sbjct: 391  KQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHD 450

Query: 383  DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            +AEVERI ARI+ELEASR A+ KDAKAIRLAEMNRKNR ENFRNASE+KPVNT LKAGEA
Sbjct: 451  EAEVERINARIEELEASRHAKVKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEA 510

Query: 563  GYDPFSRRWTRSRNYYVSKPGGAD--VAAEANN-NGTAAVAHSN 685
            GYDPFSRRWTRSRNYYVSKP  AD  VA + +  N T AVA SN
Sbjct: 511  GYDPFSRRWTRSRNYYVSKPAEADDPVATKISEANETVAVAASN 554


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  358 bits (919), Expect = 1e-96
 Identities = 180/223 (80%), Positives = 201/223 (90%), Gaps = 2/223 (0%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKLENKTTYKYLNV+WGNESSAARWQMAMVSDSAP E+E+KQWV+EV+ SGGRMP+
Sbjct: 328 PDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPS 387

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKK+AI+K+ TFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELE+AQ K D
Sbjct: 388 KQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHD 447

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+ R+QELEASRQA++KDAKA++LAEMNRKNR ENF+NASELKPVN  LKAGEA
Sbjct: 448 EAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEA 507

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANN--NGTAAVAHSN 685
           GYDPFSRRWTRSRNYY +KPG  + AA  NN  NG  A A SN
Sbjct: 508 GYDPFSRRWTRSRNYYAAKPG--EKAAAGNNIVNGNVAGAGSN 548


>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  358 bits (918), Expect = 1e-96
 Identities = 177/224 (79%), Positives = 199/224 (88%), Gaps = 2/224 (0%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKLENKTT+KYLNV+WGNE+SAARWQMAM+SDSAP E+E+KQWVREVERSGGR+P+
Sbjct: 316 PDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWVREVERSGGRLPS 375

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKKEAIKK NTFVYSAATVKQM++EKKSAS+RPLN+A EKDRLRRELEVAQ K D
Sbjct: 376 KQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHD 435

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           DAEVERI+ R+Q+LEA RQ+Q KD+KA+RLAEMNRKNR ENF+NASELKPV T LKAGEA
Sbjct: 436 DAEVERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEA 495

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEA--NNNGTAAVAHSNG 688
           GYDPFSRRWTRSRNYYVSKPG     AEA  + +G  A   SNG
Sbjct: 496 GYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNG 539


>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  352 bits (904), Expect = 6e-95
 Identities = 181/235 (77%), Positives = 201/235 (85%), Gaps = 19/235 (8%)
 Frame = +2

Query: 23   PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
            PDR YKLENKTTYKYLNV+WGNESSAARWQMAMVSDSAP E+E+KQWV+EV+RSGGRMPT
Sbjct: 329  PDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPT 388

Query: 203  KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
            KQD+LEKK+AI+K+ TFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELE+AQ K D
Sbjct: 389  KQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHD 448

Query: 383  DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            +AEV+RI+AR+QELEASR A++KDAKA++LAEMNRKNR ENF+NASELKPVNT LKAGEA
Sbjct: 449  EAEVDRIKARLQELEASRHAKQKDAKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEA 508

Query: 563  GYDPFSRRWTRSRNYY---------------VSKPG----GADVAAEANNNGTAA 670
            GYDPFSRRWTRSRNYY               V+ PG    GA V AEA    TAA
Sbjct: 509  GYDPFSRRWTRSRNYYTGEKAAAGNNSVNGIVAGPGTNSTGAPVTAEAGLVATAA 563


>gb|ESR36142.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  352 bits (903), Expect = 7e-95
 Identities = 175/222 (78%), Positives = 197/222 (88%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKLEN+TT KYLNV WGNESSAARWQMAMVSDS P E+E+KQW+REVER+GGRMP+
Sbjct: 317 PDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPS 376

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKKE+I+K NTFVYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRELEVAQ + D
Sbjct: 377 KQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHD 436

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           D ++ERI+ R+QELEASR ++ KDAKAIRLAEMNRKNR ENF+NASELK VNTSLKAGEA
Sbjct: 437 DVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEA 496

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG 688
           GYDPFSRRWTRSRNYY+SKP G +V AEAN +       +NG
Sbjct: 497 GYDPFSRRWTRSRNYYISKP-GEEVTAEANGDKNGVPGGANG 537


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Cicer arietinum]
          Length = 658

 Score =  347 bits (889), Expect = 3e-93
 Identities = 171/221 (77%), Positives = 194/221 (87%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKLEN+TT+KYLNV+WGNESSAARWQMAMVSDS P E+E+KQWV+EVERSGGRMPT
Sbjct: 330 PDRQYKLENRTTHKYLNVVWGNESSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPT 389

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKK+AI+K  TFVYSA TVKQMLQEKKS+S+RPLNVAAEKDRLRRE+E+AQ K D
Sbjct: 390 KQDVLEKKQAIQKIITFVYSADTVKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKND 449

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+ R+QELEASR A+ KDAKA++LAEMNRKNR ENF+NASEL+PVN  LKAGEA
Sbjct: 450 EAEVERIKTRVQELEASRHAKVKDAKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEA 509

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSN 685
           GYDPFSRRWTRSRNYYV+KPG    A +   N   A A SN
Sbjct: 510 GYDPFSRRWTRSRNYYVAKPGEKAAARKNTTNVLVADAGSN 550


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  343 bits (881), Expect = 3e-92
 Identities = 168/228 (73%), Positives = 194/228 (85%), Gaps = 11/228 (4%)
 Frame = +2

Query: 23   PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
            PDR YKLENKTT+KYLNV+WGNE+SAARWQMAMVSDS P E+EY QWVREVE++GGR+P+
Sbjct: 327  PDRQYKLENKTTHKYLNVVWGNENSAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPS 386

Query: 203  KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
            K+D+LEKKEAIKK+NTFVYSA TVKQM+QEKKSAS+RPLN+A EKDRLRRELE+AQ K D
Sbjct: 387  KEDVLEKKEAIKKTNTFVYSAKTVKQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHD 446

Query: 383  DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            DAEVERI+AR+++LEA +Q+Q KD+KA+RLAEMNRKNR +NF+NAS LKPV T LKAGEA
Sbjct: 447  DAEVERIKARLEQLEARQQSQGKDSKAVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEA 506

Query: 563  GYDPFSRRWTRSRNYYVSKPG-----------GADVAAEANNNGTAAV 673
            GYDPFSRRWTRSRNYYVSKP             A+  AE   NGT  V
Sbjct: 507  GYDPFSRRWTRSRNYYVSKPDEQKDDAEANAVAAESLAEVETNGTGGV 554


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  338 bits (866), Expect = 1e-90
 Identities = 170/212 (80%), Positives = 189/212 (89%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKLENK T+KYLNVIWGNE+SAARWQMAMVSDSAP EDEYKQWV+EVER+GGRM +
Sbjct: 331 PDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLS 390

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQDILEKKEAI+K N FVYSAATVKQMLQ+KKSAS RPLN+AAEKDRLRRE++VA  K D
Sbjct: 391 KQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKND 450

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+ R+Q+LEASR+ Q KDAKAIRLAEMNRKNR ENF+NASEL+P+   LKAGEA
Sbjct: 451 EAEVERIKTRLQQLEASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLK-DLKAGEA 509

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNN 658
           GYDPFSRRWTRSRNYYVS  G A+ AAEA  N
Sbjct: 510 GYDPFSRRWTRSRNYYVSNAGEANGAAEAAGN 541


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
           [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  331 bits (849), Expect = 1e-88
 Identities = 165/223 (73%), Positives = 188/223 (84%), Gaps = 5/223 (2%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           P+R YKLENKTT K+LNV+WGNE+SAARWQMAM+SDS P  DE+ QWVREVERSGGRMP+
Sbjct: 323 PNRQYKLENKTTSKFLNVVWGNENSAARWQMAMISDSPPLRDEFDQWVREVERSGGRMPS 382

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKKEAI+KSNTFVYSA TVKQMLQ+KKSA+ RPLNVAAEKDRLRR++EVA+MK D
Sbjct: 383 KQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKND 442

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+AR+QELE SR+ QEKD KA RLAEMNRKNR ENF+NASEL+PVN  LKAGEA
Sbjct: 443 EAEVERIKARLQELEDSRKVQEKDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGEA 502

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEA-----NNNGTAAVA 676
           GYDPFSRRWTRS NY+       + AA A     +NNG    A
Sbjct: 503 GYDPFSRRWTRSTNYFAKGASNGEAAAAAALAAEDNNGAGGTA 545


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
           tuberosum]
          Length = 652

 Score =  331 bits (848), Expect = 2e-88
 Identities = 165/218 (75%), Positives = 189/218 (86%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           P+R YKLENKTT K+LNV+WGNE+SAARWQMAMVSDS P  DE+ QWVREVERSGGRMP+
Sbjct: 323 PNRQYKLENKTTSKFLNVVWGNENSAARWQMAMVSDSPPLRDEFDQWVREVERSGGRMPS 382

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQD+LEKKEAI+KSNTFVYSA TVKQMLQ+KKSA+ RPLNVAAEKDRLRR++EVA+MK D
Sbjct: 383 KQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKND 442

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +AEVERI+AR+QEL+ SR+ QEKD KA RLAEMNRKNR ENF+NASEL+PVN  LKAG+A
Sbjct: 443 EAEVERIKARLQELDDSRKVQEKDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGQA 502

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVA 676
           GYDPFSRRWTRS NY+     GA+  AE  +NG  A A
Sbjct: 503 GYDPFSRRWTRSTNYFAK---GANEEAEGASNGEVAAA 537


>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Cicer arietinum] gi|502110282|ref|XP_004493843.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Cicer arietinum]
          Length = 653

 Score =  328 bits (840), Expect = 1e-87
 Identities = 164/224 (73%), Positives = 192/224 (85%), Gaps = 2/224 (0%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKL+NKTTYKYLNV+WGNE+SAARWQMAMVSDS P E+E+KQWV+EVERSGGRM  
Sbjct: 325 PDRQYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLM 384

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           K D++EK +AI+K N+FVYSAATVKQM++EKKS S RPLNVAAEKDRL+R+LE+A+ K+D
Sbjct: 385 KLDVMEKNQAIQKINSFVYSAATVKQMIEEKKSNSRRPLNVAAEKDRLKRQLEIAESKKD 444

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            AEVE+I+ R+QELEASR+ Q KDAKA+RL+EMNRKNR ENF+NASELKPVN  LKAGEA
Sbjct: 445 AAEVEKIKTRLQELEASRKTQAKDAKALRLSEMNRKNRFENFKNASELKPVNKGLKAGEA 504

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAH--SNG 688
           GYDPFSRRWTRSRNYY +K   A+ AA  NN+   AV    SNG
Sbjct: 505 GYDPFSRRWTRSRNYYNAKQ--AEEAAAGNNSSGGAVGDRGSNG 546


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score =  324 bits (831), Expect = 2e-86
 Identities = 158/222 (71%), Positives = 186/222 (83%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YKL+NKTTYKYLNV+WGNE+SAARWQMAMVSDS P E+E+KQWV+EVERSGGRM  
Sbjct: 302 PDRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLK 361

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           + D++EKK+A+ K N FVYSAATVKQML+EKKS S RPLNVAAEKDRL+RELE+A+ K D
Sbjct: 362 RLDVVEKKQAMLKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKND 421

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
            A VE+I+ ++QELE SR+++EKDAKA+RL+EMNRKNR ENF+NAS+LKPVN +LKAGEA
Sbjct: 422 AAGVEKIQTKLQELEESRKSREKDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEA 481

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG 688
           GYDPFSRRWTRSRNYY SKP     A    + G      SNG
Sbjct: 482 GYDPFSRRWTRSRNYYNSKPAEEATAGNNTSGGAVGDGGSNG 523


>gb|ERN15034.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
          Length = 624

 Score =  322 bits (825), Expect = 8e-86
 Identities = 161/220 (73%), Positives = 191/220 (86%), Gaps = 4/220 (1%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PDR YK EN+TT+KYLN +WG+E+SAARWQMA +SDSAP E E+ +WVREVER GGRMPT
Sbjct: 314 PDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLEKEFLEWVREVERGGGRMPT 373

Query: 203 KQDILEKKEAIKK-SNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQ 379
           KQD+++K EAI++ S++FVYSAATVKQMLQEKKSASTRP N+AAEKDRLR+E+E+A+ + 
Sbjct: 374 KQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNIAAEKDRLRKEMELAESRL 433

Query: 380 DDAEVERIRARIQELE-ASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAG 556
           D AE ER+RAR+QELE  S+Q+++KDAKA+ LAEMNR+NRAENF+NASELKPVNTSLKAG
Sbjct: 434 DHAEAERVRARLQELENLSQQSKKKDAKAVMLAEMNRRNRAENFKNASELKPVNTSLKAG 493

Query: 557 EAGYDPFSRRWTRSRNYYVSKP--GGADVAAEANNNGTAA 670
           EAGYDPFSRRWTRSRNYYVSKP  GG  V  EA    T A
Sbjct: 494 EAGYDPFSRRWTRSRNYYVSKPEGGGEVVKEEAETAATKA 533


>gb|ESQ29352.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  321 bits (823), Expect = 1e-85
 Identities = 160/221 (72%), Positives = 187/221 (84%), Gaps = 5/221 (2%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PD+ YKLENKTT+KYLN IWG+ESSAARWQMAM+SD  P E+EY+QW+REVER+ GRMPT
Sbjct: 323 PDKTYKLENKTTHKYLNCIWGHESSAARWQMAMISDGYPLEEEYRQWIREVERTNGRMPT 382

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQDI EKKEAIK+ N+FVYSA TVKQMLQEKKSAS RP+N+AAEKDRLR+ELEVAQ+K D
Sbjct: 383 KQDISEKKEAIKRINSFVYSAETVKQMLQEKKSASVRPMNIAAEKDRLRKELEVAQIKND 442

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +A VERI+A+I++LEASR+ +E D KA++LAEMN+KNRAENF+NASE+K +  SLKAGEA
Sbjct: 443 EAGVERIKAKIKQLEASREKKEVDKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEA 502

Query: 563 GYDPFSRRWTRSRNYY--VSKPGG---ADVAAEANNNGTAA 670
           GYDPFSRRWTRS NYY    K GG   A  AA    NG AA
Sbjct: 503 GYDPFSRRWTRSSNYYNGKRKEGGDTEATAAAAVETNGAAA 543


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
           gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
           78902-80833 [Arabidopsis thaliana]
           gi|332195649|gb|AEE33770.1| Paf1C-like transcription
           factor [Arabidopsis thaliana]
          Length = 643

 Score =  320 bits (820), Expect = 3e-85
 Identities = 155/222 (69%), Positives = 186/222 (83%)
 Frame = +2

Query: 23  PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVREVERSGGRMPT 202
           PD+ YKLENKTT+KYLNV+WGNE+SAARWQMAM+SD  P E+EY+QW+REVER+ GRMPT
Sbjct: 321 PDKTYKLENKTTHKYLNVVWGNETSAARWQMAMISDGHPLEEEYRQWIREVERTNGRMPT 380

Query: 203 KQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEVAQMKQD 382
           KQDI EKKEAI+++N+FVYSA TVKQMLQEKKSAS RP+NVAAEKDRLR+ELE+AQ K D
Sbjct: 381 KQDISEKKEAIQRTNSFVYSAETVKQMLQEKKSASVRPMNVAAEKDRLRKELEIAQSKND 440

Query: 383 DAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEA 562
           +A VERI+++I++L+ASR  +  D KA++LAEMN+KNRAENF+NASE+K +  SLKAGEA
Sbjct: 441 EAGVERIKSKIKQLDASRNKKGVDKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEA 500

Query: 563 GYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG 688
           GYDPFSRRWTRS NYY  K  G D   E N    AA   +NG
Sbjct: 501 GYDPFSRRWTRSSNYYNGKNKGKD--GEENEAAVAAAVETNG 540