BLASTX nr result
ID: Jatropha_contig00021426
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00021426
(671 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720103.1| rpoC1 [Jatropha curcas] gi|224979556|gb|ACN7... 447 e-123
ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot escule... 439 e-121
ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasilie... 436 e-120
ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus co... 436 e-120
ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus ... 435 e-120
gb|ADD31173.1| RNA polymerase beta' subunit protein [Berberidops... 435 e-120
emb|CDI73556.1| RNA polymerase beta [Pyrus spinosa] 434 e-120
ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifoli... 434 e-120
gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acu... 434 e-119
ref|YP_008814934.1| RNA polymerase beta (chloroplast) [Brassaiop... 434 e-119
gb|AGL13422.1| RNA polymerase beta (chloroplast) [Liquidambar fo... 432 e-119
ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina... 432 e-119
ref|YP_004021656.1| RNA polymerase beta [Prunus persica] gi|3093... 432 e-119
gb|ADD31180.1| RNA polymerase beta' subunit protein [Liquidambar... 432 e-119
gb|AFR25651.1| RNA polymerase beta (chloroplast) [Penthorum chin... 432 e-119
ref|YP_004286093.1| RNA polymerase beta subunit [Fragaria vesca ... 432 e-119
sp|Q589B9.1|RPOC1_SILLA RecName: Full=DNA-directed RNA polymeras... 432 e-119
ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna... 432 e-119
emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna] 432 e-119
gb|AFB77002.1| DNA-directed RNA polymerase beta' chain, partial ... 432 e-119
>ref|YP_002720103.1| rpoC1 [Jatropha curcas] gi|224979556|gb|ACN72683.1| rpoC1 [Jatropha
curcas]
Length = 680
Score = 447 bits (1150), Expect = e-123
Identities = 221/223 (99%), Positives = 222/223 (99%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEAR LMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 569
>ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot esculenta]
gi|212288297|sp|B1NWE1.1|RPOC1_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|157695876|gb|ABV66145.1| RNA polymerase beta [Manihot
esculenta]
Length = 680
Score = 439 bits (1130), Expect = e-121
Identities = 217/223 (97%), Positives = 219/223 (98%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL EVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILHEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+RID
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRID 569
>ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasiliensis]
gi|308523495|gb|ADO33545.1| RNA polymerase beta' subunit
[Hevea brasiliensis]
Length = 680
Score = 436 bits (1122), Expect = e-120
Identities = 216/223 (96%), Positives = 218/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL EVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILHEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGN RGICANRYNPCNRRN QN+RID
Sbjct: 527 PISVPTQDMLIGLYVLTSGNCRGICANRYNPCNRRNYQNKRID 569
>ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus communis]
gi|339516156|gb|AEJ82546.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 654
Score = 436 bits (1120), Expect = e-120
Identities = 216/222 (97%), Positives = 217/222 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 321 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 380
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 381 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 440
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 441 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 500
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERI 668
PISVPTQDMLIGLYVLTS NRRGICANRYNPCN RN QNERI
Sbjct: 501 PISVPTQDMLIGLYVLTSRNRRGICANRYNPCNHRNYQNERI 542
>ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus laevigata]
gi|309252881|gb|ADO60301.1| RNA polymerase beta I subunit
[Corynocarpus laevigata]
Length = 689
Score = 435 bits (1119), Expect = e-120
Identities = 213/223 (95%), Positives = 218/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQH ASNIGVAKSKIR+KEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHFASNIGVAKSKIRQKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 474 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 533
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNR+N QNE+ID
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKID 576
>gb|ADD31173.1| RNA polymerase beta' subunit protein [Berberidopsis corallina]
Length = 682
Score = 435 bits (1119), Expect = e-120
Identities = 216/223 (96%), Positives = 218/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QNERID
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERID 569
>emb|CDI73556.1| RNA polymerase beta [Pyrus spinosa]
Length = 687
Score = 434 bits (1117), Expect = e-120
Identities = 213/223 (95%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQH ASNIGVAKSKIREKEP+VWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 474 QPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 533
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+RID
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRID 576
>ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
gi|345433552|dbj|BAK69374.1| RNA polymerase beta' subunit
[Pyrus pyrifolia]
Length = 681
Score = 434 bits (1117), Expect = e-120
Identities = 213/223 (95%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 348 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 407
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQH ASNIGVAKSKIREKEP+VWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 408 QTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 467
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 468 QPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 527
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+RID
Sbjct: 528 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRID 570
>gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acuminata]
Length = 687
Score = 434 bits (1116), Expect = e-119
Identities = 212/223 (95%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 533
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PIS+PTQDMLIGLYVLTSGNRRGIC NRYNPCNRRN QN+R D
Sbjct: 534 PISIPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNQRSD 576
>ref|YP_008814934.1| RNA polymerase beta (chloroplast) [Brassaiopsis hainla]
gi|458599183|gb|AGG39034.1| RNA polymerase beta
(chloroplast) [Brassaiopsis hainla]
Length = 689
Score = 434 bits (1115), Expect = e-119
Identities = 213/222 (95%), Positives = 216/222 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
P+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 474 HPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 533
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERI 668
PISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRRN QNERI
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNERI 575
>gb|AGL13422.1| RNA polymerase beta (chloroplast) [Liquidambar formosana]
Length = 682
Score = 432 bits (1112), Expect = e-119
Identities = 214/223 (95%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QNER D
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERSD 569
>ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina rupicola]
gi|371532614|gb|AEX31724.1| RNA polymerase beta I subunit
(chloroplast) [Pentactina rupicola]
Length = 682
Score = 432 bits (1112), Expect = e-119
Identities = 212/223 (95%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQH ASNIGVAKSKIREKEP+VWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPC+RRN QN+RID
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCHRRNYQNKRID 569
>ref|YP_004021656.1| RNA polymerase beta [Prunus persica] gi|309321425|gb|ADO64966.1| RNA
polymerase beta [Prunus persica]
Length = 683
Score = 432 bits (1112), Expect = e-119
Identities = 212/223 (95%), Positives = 216/223 (96%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 348 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 407
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 408 QTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAF 467
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 468 QPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 527
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+RID
Sbjct: 528 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRID 570
>gb|ADD31180.1| RNA polymerase beta' subunit protein [Liquidambar styraciflua]
Length = 682
Score = 432 bits (1112), Expect = e-119
Identities = 214/223 (95%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QNER D
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERSD 569
>gb|AFR25651.1| RNA polymerase beta (chloroplast) [Penthorum chinense]
Length = 686
Score = 432 bits (1111), Expect = e-119
Identities = 214/223 (95%), Positives = 216/223 (96%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 351 DGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 410
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIR HLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 411 QTFVIRGLIRHHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 470
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 471 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 530
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLYVLTSGNRRGICANRYNP NR N QNERID
Sbjct: 531 PISVPTQDMLIGLYVLTSGNRRGICANRYNPRNRGNDQNERID 573
>ref|YP_004286093.1| RNA polymerase beta subunit [Fragaria vesca subsp. vesca]
gi|408830236|ref|YP_006883254.1| RNA polymerase beta
subunit (chloroplast) [Fragaria vesca subsp. bracteata]
gi|408830311|ref|YP_006883328.1| RNA polymerase beta
subunit [Fragaria mandshurica]
gi|428697190|ref|YP_007025374.1| RNA polymerase beta
subunit (chloroplast) [Fragaria chiloensis]
gi|428697276|ref|YP_007025459.1| RNA polymerase beta
subunit (chloroplast) [Fragaria virginiana]
gi|324022768|gb|ADY15342.1| RNA polymerase beta subunit
[Fragaria vesca subsp. vesca] gi|357198729|gb|AET62645.1|
RNA polymerase beta subunit (chloroplast) [Fragaria
chiloensis] gi|357198815|gb|AET62730.1| RNA polymerase
beta subunit (chloroplast) [Fragaria virginiana]
gi|378554698|gb|AFC17633.1| RNA polymerase beta subunit
(chloroplast) [Fragaria vesca subsp. bracteata]
gi|378554773|gb|AFC17707.1| RNA polymerase beta subunit
[Fragaria mandshurica] gi|407080457|gb|AFS89546.1| RNA
polymerase beta subunit (chloroplast) [Fragaria
chiloensis]
Length = 680
Score = 432 bits (1111), Expect = e-119
Identities = 212/222 (95%), Positives = 216/222 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQH ASNIGVAKSKIREKEP+VWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERI 668
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNR NS+NERI
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERI 568
>sp|Q589B9.1|RPOC1_SILLA RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|62149316|dbj|BAD93458.1| RNA polymerase beta chain
[Silene latifolia]
Length = 687
Score = 432 bits (1110), Expect = e-119
Identities = 210/223 (94%), Positives = 218/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 350 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 409
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q F+IRGLIRQHLASNIGVAKSKIREKEPI+W+ILQEVMQGHP+LLNRAPTLHRLGIQAF
Sbjct: 410 QTFIIRGLIRQHLASNIGVAKSKIREKEPIIWKILQEVMQGHPILLNRAPTLHRLGIQAF 469
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEAR LMFSHMNLLSPAIGD
Sbjct: 470 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGD 529
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLY+LTSG RRGICANRYNP NR+N QNERID
Sbjct: 530 PISVPTQDMLIGLYILTSGTRRGICANRYNPWNRKNDQNERID 572
>ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna]
gi|41018086|sp|Q8S8Y0.2|RPOC1_ATRBE RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 681
Score = 432 bits (1110), Expect = e-119
Identities = 211/221 (95%), Positives = 216/221 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 347 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 406
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 407 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 466
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 467 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 526
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNER 665
PISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRRN QN++
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNQK 567
>emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna]
Length = 688
Score = 432 bits (1110), Expect = e-119
Identities = 211/221 (95%), Positives = 216/221 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF
Sbjct: 354 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 413
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 414 QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 473
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 474 QPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGD 533
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNER 665
PISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRRN QN++
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNQK 574
>gb|AFB77002.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Mollugo verticillata]
Length = 668
Score = 432 bits (1110), Expect = e-119
Identities = 211/223 (94%), Positives = 217/223 (97%)
Frame = +3
Query: 3 DGHNRVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF 182
DGHN+VYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVI+VGPSLSLHRCGLPREIAIELF
Sbjct: 338 DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIIVGPSLSLHRCGLPREIAIELF 397
Query: 183 QIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF 362
Q FVIRGLIRQHLASNIGVAKS+IREKEPIVW+ILQEVMQGHPVLLNRAPTLHRLGIQAF
Sbjct: 398 QTFVIRGLIRQHLASNIGVAKSQIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAF 457
Query: 363 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARFLMFSHMNLLSPAIGD 542
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EAR LMFSHMNLLSPAIGD
Sbjct: 458 QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGD 517
Query: 543 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERID 671
PISVPTQDMLIGLY LTSGNRRGICANRYNPCN +N QNERID
Sbjct: 518 PISVPTQDMLIGLYALTSGNRRGICANRYNPCNHKNYQNERID 560