BLASTX nr result
ID: Jatropha_contig00019492
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00019492
(706 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720103.1| rpoC1 [Jatropha curcas] gi|224979556|gb|ACN7... 318 1e-84
ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot escule... 296 3e-78
ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasilie... 292 6e-77
ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus co... 290 4e-76
ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]... 284 2e-74
emb|CDI73556.1| RNA polymerase beta [Pyrus spinosa] 281 1e-73
ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifoli... 281 1e-73
gb|ADD31173.1| RNA polymerase beta' subunit protein [Berberidops... 279 7e-73
ref|YP_004021656.1| RNA polymerase beta [Prunus persica] gi|3093... 276 3e-72
gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia in... 276 3e-72
gb|AFB76999.1| DNA-directed RNA polymerase beta' chain, partial ... 275 7e-72
gb|AFR25651.1| RNA polymerase beta (chloroplast) [Penthorum chin... 275 1e-71
emb|CAN77745.1| hypothetical protein VITISV_016659 [Vitis vinifera] 275 1e-71
ref|YP_567067.1| RNA polymerase beta' subunit [Vitis vinifera] g... 275 1e-71
ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina... 274 2e-71
gb|AFB77002.1| DNA-directed RNA polymerase beta' chain, partial ... 273 5e-71
ref|YP_001123106.1| RNA polymerase beta' subunit [Olimarabidopsi... 271 1e-70
ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus ... 271 2e-70
gb|ADD31178.1| RNA polymerase beta' subunit protein [Gunnera man... 271 2e-70
ref|YP_008814934.1| RNA polymerase beta (chloroplast) [Brassaiop... 270 2e-70
>ref|YP_002720103.1| rpoC1 [Jatropha curcas] gi|224979556|gb|ACN72683.1| rpoC1 [Jatropha
curcas]
Length = 680
Score = 318 bits (815), Expect = 1e-84
Identities = 152/154 (98%), Positives = 152/154 (98%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNER DDNNNKYTKEPFFSNSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERIDDNNNKYTKEPFFSNSYD 586
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE
Sbjct: 587 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 646
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDGI 464
IICIYIRTTVGHISFYREIEEAIQ FCQACSDGI
Sbjct: 647 IICIYIRTTVGHISFYREIEEAIQGFCQACSDGI 680
>ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot esculenta]
gi|212288297|sp|B1NWE1.1|RPOC1_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|157695876|gb|ABV66145.1| RNA polymerase beta [Manihot
esculenta]
Length = 680
Score = 296 bits (759), Expect = 3e-78
Identities = 139/154 (90%), Positives = 147/154 (95%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+R D NN+KYTKEP FSNSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDGNNDKYTKEPLFSNSYD 586
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
A+GA+R+KRI+LDSPLWLRWQLDQRAI SREAP+EVHYESLGTYHEIYEHYLIVRNIKKE
Sbjct: 587 ALGAYRQKRIHLDSPLWLRWQLDQRAITSREAPIEVHYESLGTYHEIYEHYLIVRNIKKE 646
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDGI 464
I+CIYIRTTVGHIS YREIEEAIQ FCQACSDGI
Sbjct: 647 ILCIYIRTTVGHISLYREIEEAIQGFCQACSDGI 680
>ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasiliensis]
gi|308523495|gb|ADO33545.1| RNA polymerase beta' subunit
[Hevea brasiliensis]
Length = 680
Score = 292 bits (748), Expect = 6e-77
Identities = 137/154 (88%), Positives = 146/154 (94%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGN RGICANRYNPCNRRN QN+R D NN+KYTKEPFFSNSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGNCRGICANRYNPCNRRNYQNKRIDGNNDKYTKEPFFSNSYD 586
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
A+GA+R+KRI+LDSPLWLRWQLDQRAI SREAP+EVHYESLGTYHEIYEHYLIV+NIKKE
Sbjct: 587 ALGAYRQKRIHLDSPLWLRWQLDQRAITSREAPIEVHYESLGTYHEIYEHYLIVKNIKKE 646
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDGI 464
I+CIYIRTTVGHIS YREIEEAIQ FCQACSD I
Sbjct: 647 ILCIYIRTTVGHISLYREIEEAIQGFCQACSDSI 680
>ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus communis]
gi|339516156|gb|AEJ82546.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 654
Score = 290 bits (741), Expect = 4e-76
Identities = 139/154 (90%), Positives = 144/154 (93%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTS NRRGICANRYNPCN RN QNER DNNN+YTKE FFSNSYD
Sbjct: 501 PISVPTQDMLIGLYVLTSRNRRGICANRYNPCNHRNYQNERIYDNNNQYTKESFFSNSYD 560
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRWQLDQRAI SREAP+EVHYESLGTYHEIYEHYLIVRNIKKE
Sbjct: 561 AIGAYRQKRINLDSPLWLRWQLDQRAIASREAPVEVHYESLGTYHEIYEHYLIVRNIKKE 620
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDGI 464
I+CIYIRTTVGHIS YREIEEAIQ FCQA SDGI
Sbjct: 621 ILCIYIRTTVGHISLYREIEEAIQGFCQAGSDGI 654
>ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]
gi|212288463|sp|B1A926.1|RPOC1_CARPA RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|166344123|gb|ABY86773.1| RNA polymerase beta' chain
[Carica papaya]
Length = 680
Score = 284 bits (726), Expect = 2e-74
Identities = 132/151 (87%), Positives = 141/151 (93%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDML+GLYVLTSG RRGICANRYNPCNR+N QNER DDNN KYTKEPFF NSYD
Sbjct: 527 PISVPTQDMLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKEPFFCNSYD 586
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRWQLDQR I SREAP+EVHYESLGTYHEIY HYLIVR++KKE
Sbjct: 587 AIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKE 646
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACS 455
I+CIYIRTTVGHIS YREIEEAIQ FC+ACS
Sbjct: 647 ILCIYIRTTVGHISLYREIEEAIQGFCRACS 677
>emb|CDI73556.1| RNA polymerase beta [Pyrus spinosa]
Length = 687
Score = 281 bits (720), Expect = 1e-73
Identities = 133/153 (86%), Positives = 141/153 (92%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+R DDNN KYTKEPFF NSYD
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEPFFCNSYD 593
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRW+LDQR I SRE P+EVHYESLGTYHEIY HYLIVR+IKKE
Sbjct: 594 AIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYLIVRSIKKE 653
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
IICIY+RTTVGHIS YREIEEAIQ FC+A S G
Sbjct: 654 IICIYVRTTVGHISLYREIEEAIQGFCRAYSYG 686
>ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
gi|345433552|dbj|BAK69374.1| RNA polymerase beta'
subunit [Pyrus pyrifolia]
Length = 681
Score = 281 bits (720), Expect = 1e-73
Identities = 133/153 (86%), Positives = 141/153 (92%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+R DDNN KYTKEPFF NSYD
Sbjct: 528 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEPFFCNSYD 587
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRW+LDQR I SRE P+EVHYESLGTYHEIY HYLIVR+IKKE
Sbjct: 588 AIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYLIVRSIKKE 647
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
IICIY+RTTVGHIS YREIEEAIQ FC+A S G
Sbjct: 648 IICIYVRTTVGHISLYREIEEAIQGFCRAYSYG 680
>gb|ADD31173.1| RNA polymerase beta' subunit protein [Berberidopsis corallina]
Length = 682
Score = 279 bits (713), Expect = 7e-73
Identities = 134/155 (86%), Positives = 142/155 (91%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QNER DDNN KYTKE PFF NS
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDNNYKYTKEKEPFFCNS 586
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R+KRINLDSPLWLRW+LDQR I SREAP+EVHYESLGTYHEIY HYLIVR++K
Sbjct: 587 YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVK 646
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
KEI+ IYIRTTVGHIS YREIEEAIQ FC+ACS G
Sbjct: 647 KEILFIYIRTTVGHISLYREIEEAIQGFCRACSYG 681
>ref|YP_004021656.1| RNA polymerase beta [Prunus persica] gi|309321425|gb|ADO64966.1|
RNA polymerase beta [Prunus persica]
Length = 683
Score = 276 bits (707), Expect = 3e-72
Identities = 133/155 (85%), Positives = 141/155 (90%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QN+R DDNN KYTKE PFF NS
Sbjct: 528 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNS 587
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R+KRINLDSPLWLRW+LDQR I SRE P+EVHYESLGTYHEIY HYLIVR+IK
Sbjct: 588 YDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYLIVRSIK 647
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
KEIICIY+RTTVGHIS YREIEEAIQ FC+A S G
Sbjct: 648 KEIICIYVRTTVGHISLYREIEEAIQGFCRAYSYG 682
>gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia indica]
Length = 689
Score = 276 bits (707), Expect = 3e-72
Identities = 132/155 (85%), Positives = 141/155 (90%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDD--NNNKYTKEPFFSNS 176
PIS+PTQDMLIGLYVLTSGNRRGICA RYNPCN +N QNER DD NN KYTKEP FSNS
Sbjct: 534 PISIPTQDMLIGLYVLTSGNRRGICATRYNPCNCKNYQNERIDDITNNYKYTKEPLFSNS 593
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGAFR+KRINLDSPLWLRW+LDQR I SREAP+EVHYESLGTYHEIY HYLIVR++K
Sbjct: 594 YDAIGAFRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYESLGTYHEIYGHYLIVRSVK 653
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
KEI+CIYIRTTVGHIS YREIEEAIQ FC+ACS G
Sbjct: 654 KEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG 688
>gb|AFB76999.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Anredera baselloides]
Length = 668
Score = 275 bits (704), Expect = 7e-72
Identities = 130/151 (86%), Positives = 139/151 (92%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNP N +N QNERFDDNN KYTKEPFF NSYD
Sbjct: 518 PISVPTQDMLIGLYVLTSGNRRGICANRYNPWNHKNYQNERFDDNNYKYTKEPFFCNSYD 577
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRW+LDQR I SREAP+EVHYESLGTYHEIY HYLIVR++KKE
Sbjct: 578 AIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKE 637
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACS 455
I+ IYIRTTVGHI YREIEEAIQ FC+ACS
Sbjct: 638 ILFIYIRTTVGHIYLYREIEEAIQGFCRACS 668
>gb|AFR25651.1| RNA polymerase beta (chloroplast) [Penthorum chinense]
Length = 686
Score = 275 bits (703), Expect = 1e-71
Identities = 132/153 (86%), Positives = 141/153 (92%), Gaps = 2/153 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNP NR N QNER DDNN+KYTKE PFF NS
Sbjct: 531 PISVPTQDMLIGLYVLTSGNRRGICANRYNPRNRGNDQNERIDDNNSKYTKEKEPFFCNS 590
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R+KRINLDSPLWLRW+LDQR I SREAP+EVHYESLGTYHEIYEHYLIVR++K
Sbjct: 591 YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYEHYLIVRSVK 650
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACS 455
KEI+ IYIRTTVGHIS YREIEEAIQ FC+ACS
Sbjct: 651 KEILWIYIRTTVGHISLYREIEEAIQGFCRACS 683
>emb|CAN77745.1| hypothetical protein VITISV_016659 [Vitis vinifera]
Length = 188
Score = 275 bits (703), Expect = 1e-71
Identities = 132/153 (86%), Positives = 139/153 (90%), Gaps = 2/153 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QNER DDNN +YTKE PFF NS
Sbjct: 33 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDNNYRYTKEKEPFFCNS 92
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R KRINL SPLWLRWQLDQR I S+EAP+EVHYESLGTYHEIY HYLIVR++K
Sbjct: 93 YDAIGAYRHKRINLYSPLWLRWQLDQRLIASKEAPIEVHYESLGTYHEIYGHYLIVRSVK 152
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACS 455
KEI CIYIRTTVGHIS YREIEEAIQ FC+ACS
Sbjct: 153 KEIPCIYIRTTVGHISLYREIEEAIQGFCRACS 185
>ref|YP_567067.1| RNA polymerase beta' subunit [Vitis vinifera]
gi|122242806|sp|Q0ZJ29.1|RPOC1_VITVI RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|91701641|gb|ABE47525.1| RNA polymerase beta [Vitis
vinifera] gi|550533639|dbj|BAO01483.1| RNA polymerase
beta' subunit (chloroplast) [Vitis vinifera subsp.
caucasica] gi|550533725|dbj|BAO01567.1| RNA polymerase
beta' subunit (chloroplast) [Vitis vinifera subsp.
caucasica] gi|550533810|dbj|BAO01651.1| RNA polymerase
beta' subunit (chloroplast) [Vitis vinifera subsp.
caucasica]
Length = 682
Score = 275 bits (703), Expect = 1e-71
Identities = 132/153 (86%), Positives = 139/153 (90%), Gaps = 2/153 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN QNER DDNN +YTKE PFF NS
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDNNYRYTKEKEPFFCNS 586
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R KRINL SPLWLRWQLDQR I S+EAP+EVHYESLGTYHEIY HYLIVR++K
Sbjct: 587 YDAIGAYRHKRINLYSPLWLRWQLDQRLIASKEAPIEVHYESLGTYHEIYGHYLIVRSVK 646
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACS 455
KEI CIYIRTTVGHIS YREIEEAIQ FC+ACS
Sbjct: 647 KEIPCIYIRTTVGHISLYREIEEAIQGFCRACS 679
>ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina rupicola]
gi|371532614|gb|AEX31724.1| RNA polymerase beta I
subunit (chloroplast) [Pentactina rupicola]
Length = 682
Score = 274 bits (700), Expect = 2e-71
Identities = 131/155 (84%), Positives = 141/155 (90%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNPC+RRN QN+R DDNN KYTKE PFF NS
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCHRRNYQNKRIDDNNYKYTKEKEPFFCNS 586
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R+KRINLDSPLWLRW+LDQR I SRE P+EVHYESLGTYHEIY HYL+VR+IK
Sbjct: 587 YDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYLLVRSIK 646
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
KEIICIY+RTTVGHIS YREIEEAIQ FC+A S G
Sbjct: 647 KEIICIYVRTTVGHISLYREIEEAIQGFCRAYSYG 681
>gb|AFB77002.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Mollugo verticillata]
Length = 668
Score = 273 bits (697), Expect = 5e-71
Identities = 128/151 (84%), Positives = 137/151 (90%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLY LTSGNRRGICANRYNPCN +N QNER DDNN KYTKEPFF NSYD
Sbjct: 518 PISVPTQDMLIGLYALTSGNRRGICANRYNPCNHKNYQNERIDDNNYKYTKEPFFCNSYD 577
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRW+LDQR I SREAP+EVHYESLG+YHEIY HYLIVR+IKKE
Sbjct: 578 AIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGSYHEIYGHYLIVRSIKKE 637
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACS 455
I+ IYIRTTVGHI YREIEEAIQ FC+ CS
Sbjct: 638 IMFIYIRTTVGHIYLYREIEEAIQGFCRTCS 668
>ref|YP_001123106.1| RNA polymerase beta' subunit [Olimarabidopsis pumila]
gi|212288305|sp|A4QJS4.1|RPOC1_OLIPU RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|134286303|dbj|BAF49930.1| RNA polymerase beta
subunit-1 [Olimarabidopsis pumila]
Length = 680
Score = 271 bits (694), Expect = 1e-70
Identities = 127/151 (84%), Positives = 134/151 (88%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSG RRGICANRYNPCNR+N QNER + N KYTKEPFF NSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERISETNYKYTKEPFFCNSYD 586
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+KRINLDSPLWLRWQLDQR I SRE P+EVHYES G YHEIY HYLIVR++KKE
Sbjct: 587 AIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKE 646
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACS 455
CIYIRTTVGHISFYREIEEAIQ F QACS
Sbjct: 647 TFCIYIRTTVGHISFYREIEEAIQGFSQACS 677
>ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus laevigata]
gi|309252881|gb|ADO60301.1| RNA polymerase beta I
subunit [Corynocarpus laevigata]
Length = 689
Score = 271 bits (692), Expect = 2e-70
Identities = 128/155 (82%), Positives = 142/155 (91%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKE--PFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNR+N QNE+ DDN+ KYTKE PFF NS
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIDDNDYKYTKEKEPFFCNS 593
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R+KRI+LDSPLWLRW+LDQR I SREAP+EVHYESLGT+HEIY YLI+++IK
Sbjct: 594 YDAIGAYRQKRIHLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIIKSIK 653
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
KEI+CIYIRTTVGHIS YREIEEAIQ FC+ACS G
Sbjct: 654 KEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG 688
>gb|ADD31178.1| RNA polymerase beta' subunit protein [Gunnera manicata]
Length = 680
Score = 271 bits (692), Expect = 2e-70
Identities = 128/154 (83%), Positives = 138/154 (89%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRN +N+R DN KEPFF NSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYKNKRIADNKYTKEKEPFFCNSYD 586
Query: 183 AIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIKKE 362
AIGA+R+K INLDSPLWLRW+LDQR I SRE P+EVHYESLGTYHEIY HYLIVR++KKE
Sbjct: 587 AIGAYRQKIINLDSPLWLRWRLDQRVIASREVPIEVHYESLGTYHEIYGHYLIVRSVKKE 646
Query: 363 IICIYIRTTVGHISFYREIEEAIQRFCQACSDGI 464
I+CIYIRTTVGHISFYREIEEAIQ FC+ACS GI
Sbjct: 647 ILCIYIRTTVGHISFYREIEEAIQGFCRACSYGI 680
>ref|YP_008814934.1| RNA polymerase beta (chloroplast) [Brassaiopsis hainla]
gi|458599183|gb|AGG39034.1| RNA polymerase beta
(chloroplast) [Brassaiopsis hainla]
Length = 689
Score = 270 bits (691), Expect = 2e-70
Identities = 132/155 (85%), Positives = 140/155 (90%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERFDDNNNKYTK--EPFFSNS 176
PISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRRN QNER DNN KYTK EPFF NS
Sbjct: 534 PISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNERIYDNNYKYTKKKEPFFCNS 593
Query: 177 YDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGTYHEIYEHYLIVRNIK 356
YDAIGA+R+KRINLDSPLWLRW+LDQR I ++EAPLEVHYESLGTY+EIY YLIVR+IK
Sbjct: 594 YDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAPLEVHYESLGTYYEIYGQYLIVRSIK 653
Query: 357 KEIICIYIRTTVGHISFYREIEEAIQRFCQACSDG 461
KEI+ IYIRTTVGHISFYREIEEAIQ FCQACS G
Sbjct: 654 KEILYIYIRTTVGHISFYREIEEAIQGFCQACSYG 688