BLASTX nr result
ID: Jatropha_contig00018684
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00018684
(545 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76474.1| hypothetical protein VITISV_016008 [Vitis vinifera] 129 6e-42
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 127 2e-40
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 130 3e-37
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera] 132 8e-36
ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800... 122 8e-35
emb|CAN60440.1| hypothetical protein VITISV_032287 [Vitis vinifera] 96 1e-33
gb|ERN10502.1| hypothetical protein AMTR_s02100p00009220, partia... 147 2e-33
emb|CAN71870.1| hypothetical protein VITISV_044169 [Vitis vinifera] 99 7e-33
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 111 2e-32
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 108 1e-31
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 108 1e-31
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 103 1e-31
emb|CAN64020.1| hypothetical protein VITISV_008811 [Vitis vinifera] 90 3e-31
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 107 4e-31
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 105 9e-30
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 102 2e-29
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 105 3e-29
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 102 3e-29
gb|AAQ72730.1| putative integrase [Petunia x hybrida] 107 4e-29
gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-... 104 6e-29
>emb|CAN76474.1| hypothetical protein VITISV_016008 [Vitis vinifera]
Length = 519
Score = 129 bits (323), Expect(3) = 6e-42
Identities = 61/105 (58%), Positives = 74/105 (70%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
R +IE G ++++ P DWVWVH RK RFP +SKL RGDGPF VLER
Sbjct: 351 RKHIEKKNEQYATKANKGXRQVLFEPGDWVWVHIRKGRFPTCXQSKLHPRGDGPFQVLER 410
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDD 511
INDNAYK+DLPGEY +SAT N+SDLSPFD+ D +TN F+ERG+D
Sbjct: 411 INDNAYKLDLPGEYNISATVNVSDLSPFDVGDDSRTNPFEERGND 455
Score = 67.8 bits (164), Expect(3) = 6e-42
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
DCL F EFAYNRS+HST+ +SPF++VYGF NE+++LDGEKK+ +
Sbjct: 287 DCLXFIEFAYNRSVHSTTNFSPFKIVYGFNPLTPLDLLPLPVNEMTSLDGEKKAEM 342
Score = 20.8 bits (42), Expect(3) = 6e-42
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 154 KKKAELVKSLHE 189
+KKAE+V LHE
Sbjct: 337 EKKAEMVXKLHE 348
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 127 bits (319), Expect(2) = 2e-40
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +2
Query: 248 GRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLERINDNAYKIDLPGEYGVS 427
GR++++ DWVWVH RKERFP +++SKL RGDGPF VLERINDNAYK+DL GEY +S
Sbjct: 1044 GRRQVLFESGDWVWVHMRKERFPTRRQSKLHPRGDGPFQVLERINDNAYKLDLLGEYNIS 1103
Query: 428 ATFNISDLSPFDMDADLKTNLFKERGDD 511
ATF +SDLSPF++ D +TN F+ERG+D
Sbjct: 1104 ATFKVSDLSPFNVGDDSRTNPFEERGND 1131
Score = 64.7 bits (156), Expect(2) = 2e-40
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSR 167
DCLPF EFAYNRS+HST+ +SPFE+VYGF NE+++LD +K +
Sbjct: 982 DCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVNEMTSLDEKKNEQ 1036
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 130 bits (326), Expect(2) = 3e-37
Identities = 62/107 (57%), Positives = 76/107 (71%)
Frame = +2
Query: 191 RARANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVL 370
+ RA IE GRK ++ P DWVW+H+ K RFPNQ+KSKL RGDGPF VL
Sbjct: 1175 KVRAQIEKKNEQYAQKANKGRKAIIFKPGDWVWIHYSKNRFPNQRKSKLMPRGDGPFQVL 1234
Query: 371 ERINDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDD 511
ERINDNAYK+DL GE+ VS+TFN++DL+PFD +D TNLF+E DD
Sbjct: 1235 ERINDNAYKLDLRGEHSVSSTFNVADLAPFDF-SDSGTNLFQEGEDD 1280
Score = 50.8 bits (120), Expect(2) = 3e-37
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSR 167
+ LP+ EFAYNR+IHST+ SPFE+ YGF N+ +D KK++
Sbjct: 1113 ESLPYVEFAYNRAIHSTTNMSPFEVAYGFNPLTPLDLIPLHVNDKECVDAAKKAQ 1167
>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
Length = 1281
Score = 132 bits (331), Expect(2) = 8e-36
Identities = 61/105 (58%), Positives = 75/105 (71%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
R +IE G +++ P DWVWVH RKERFP ++ SKL RGDGPF VLER
Sbjct: 1134 RKHIEKKNEQYVSKANKGXXQVLFEPGDWVWVHMRKERFPTRRXSKLHPRGDGPFQVLER 1193
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDD 511
INDNAYK+D+PGEY +SATFN+SDLSPFD+ D TN F+E+G+D
Sbjct: 1194 INDNAYKLDIPGEYNISATFNVSDLSPFDVGDDSXTNPFEEKGND 1238
Score = 44.3 bits (103), Expect(2) = 8e-36
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 42 IHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKK 161
+HST+ +SPFE+VYGF NE+ +LDGEKK
Sbjct: 1083 VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNEMXSLDGEKK 1122
>ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800881 [Glycine max]
Length = 1746
Score = 122 bits (305), Expect(3) = 8e-35
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = +2
Query: 251 RKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLERINDNAYKIDLPGEYGVSA 430
RKK+VL P DWVWVH RKERFP +KSKL RGDGPF VLE+INDNAYKIDLP EY VSA
Sbjct: 1401 RKKVVLEPGDWVWVHLRKERFPKHRKSKLQPRGDGPFQVLEKINDNAYKIDLPSEYNVSA 1460
Query: 431 TFNISDLSPFDMD 469
TFN+SDLS FD++
Sbjct: 1461 TFNVSDLSLFDVE 1473
Score = 50.1 bits (118), Expect(3) = 8e-35
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 6 CLPFFEFAYNRSIHSTSGYSPFELVYGF 89
CLP EFAYNR++HST+ SPFE+VYGF
Sbjct: 1319 CLPHVEFAYNRAVHSTTNCSPFEIVYGF 1346
Score = 21.2 bits (43), Expect(3) = 8e-35
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 160 KAELVKSLHEKS*SQHRKEEQAIC**SQQRQEKV 261
KAE VK LHE+ Q K+ + + + ++KV
Sbjct: 1371 KAEYVKKLHEQVKVQIEKKNASYARQANKSRKKV 1404
>emb|CAN60440.1| hypothetical protein VITISV_032287 [Vitis vinifera]
Length = 893
Score = 95.5 bits (236), Expect(3) = 1e-33
Identities = 50/105 (47%), Positives = 61/105 (58%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
R +IE GR++++ P DWVWVH RK RFP K+SKL RGDGPF VLER
Sbjct: 196 RKHIEKKNEQYATKANKGRRQVLFEPGDWVWVHIRKGRFPTCKQSKLHPRGDGPFQVLER 255
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDD 511
INDNAYK+DLPG+ D +TN F+ERG+D
Sbjct: 256 INDNAYKLDLPGD-------------------DSRTNPFEERGND 281
Score = 70.9 bits (172), Expect(3) = 1e-33
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
DCLPF EFAYNRS+HST+ +SPF++VYGF NE+++LDGEKK+ +
Sbjct: 132 DCLPFIEFAYNRSVHSTTNFSPFKIVYGFNPLTPLDLLPLPVNEMTSLDGEKKAEM 187
Score = 23.1 bits (48), Expect(3) = 1e-33
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 154 KKKAELVKSLHE 189
+KKAE+VK LHE
Sbjct: 182 EKKAEMVKKLHE 193
>gb|ERN10502.1| hypothetical protein AMTR_s02100p00009220, partial [Amborella
trichopoda]
Length = 183
Score = 147 bits (370), Expect = 2e-33
Identities = 73/121 (60%), Positives = 83/121 (68%)
Frame = +2
Query: 155 KKKQNW*SLYMRRARANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSK 334
+KK + + RAR NIE GR K V P DWVW+H RKERFP Q++SK
Sbjct: 7 EKKAEFVKKFHERARLNIERRTEQYLKQANKGRHKQVFEPGDWVWLHMRKERFPTQRRSK 66
Query: 335 LDARGDGPFLVLERINDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDDT 514
L RGDGPF VLERINDNAYK+DLPGEY VSATFN+SDLSPFD DL+TN KE G+D
Sbjct: 67 LLPRGDGPFQVLERINDNAYKLDLPGEYNVSATFNVSDLSPFDTGEDLRTNPSKEGGNDE 126
Query: 515 D 517
D
Sbjct: 127 D 127
>emb|CAN71870.1| hypothetical protein VITISV_044169 [Vitis vinifera]
Length = 750
Score = 99.4 bits (246), Expect(3) = 7e-33
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 248 GRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLERINDNAYKIDLPGEYGVS 427
GR++++ P DWVWVH RKERFP + SKL RGDG F ++DLPGEY +S
Sbjct: 599 GRRQVIFEPGDWVWVHMRKERFPTCRWSKLHPRGDGLF-----------QLDLPGEYNIS 647
Query: 428 ATFNISDLSPFDMDADLKTNLFKERGDD 511
ATFN+SDLSPFD+ D +TN F+E+ +D
Sbjct: 648 ATFNVSDLSPFDVGDDSRTNPFEEKEND 675
Score = 65.9 bits (159), Expect(3) = 7e-33
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
DCL F EFAYNRS+HS + SPFE+VYGF NE+++LDGEKK+++
Sbjct: 518 DCLSFIEFAYNRSVHSITNSSPFEIVYGFNPLTPLDLLPLQVNEMTSLDGEKKAKM 573
Score = 21.6 bits (44), Expect(3) = 7e-33
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 154 KKKAELVKSLHE 189
+KKA++VK LHE
Sbjct: 568 EKKAKMVKKLHE 579
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 111 bits (278), Expect(2) = 2e-32
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 9/121 (7%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
+ NIE GRK +V P D VW+H RK+RFPN +KSKL R DGPF VLE+
Sbjct: 1498 KENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEK 1557
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDAD---LKTNLFKERGDDTD------PLSP 529
INDNAYK++LP ++GVS TFNI+DL P+ + D +T F+E DD D P +P
Sbjct: 1558 INDNAYKLELPADFGVSPTFNIADLKPYLGEEDELPSRTTSFQEGEDDEDINTIVTPTAP 1617
Query: 530 T 532
T
Sbjct: 1618 T 1618
Score = 53.5 bits (127), Expect(2) = 2e-32
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
+CLP EFAYNRS+HST+ PFE+VYGF +E N D +++S +
Sbjct: 1434 ECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSEL 1489
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 108 bits (270), Expect(2) = 1e-31
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Frame = +2
Query: 251 RKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLERINDNAYKIDLPGEYGVSA 430
RKK+ P D VWVH RK+RFP ++KSKL RGDGPF VL +INDNAYKI+LP +YGVS+
Sbjct: 1475 RKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSS 1534
Query: 431 TFNISDLSPF---DMDADLKTNLFKERGDDTD 517
TFN++DL+PF + ++ F+E DD D
Sbjct: 1535 TFNVADLTPFFGLEDSESSRSTPFQEGEDDED 1566
Score = 53.9 bits (128), Expect(2) = 1e-31
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKS 164
+CLP EFAYNR++HST+ PFE+VYGFK E S+++ K++
Sbjct: 1393 ECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRA 1446
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 108 bits (270), Expect(2) = 1e-31
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Frame = +2
Query: 251 RKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLERINDNAYKIDLPGEYGVSA 430
RKK+ P D VWVH RK+RFP ++KSKL RGDGPF VL +INDNAYKI+LP +YGVS+
Sbjct: 443 RKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSS 502
Query: 431 TFNISDLSPF---DMDADLKTNLFKERGDDTD 517
TFN++DL+PF + ++ F+E DD D
Sbjct: 503 TFNVADLTPFFGLEDSESSRSTPFQEGEDDED 534
Score = 53.9 bits (128), Expect(2) = 1e-31
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKS 164
+CLP EFAYNR++HST+ PFE+VYGFK E S+++ K++
Sbjct: 361 ECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRA 414
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 103 bits (258), Expect(2) = 1e-31
Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Frame = +2
Query: 155 KKKQNW*SLYMRRARANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSK 334
KKK +A+ NIE RK+++ D VW+H RKERFP ++KSK
Sbjct: 1631 KKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPKERKSK 1690
Query: 335 LDARGDGPFLVLERINDNAYKIDLPGEYGVSATFNISDLSPFDMD-ADLKTNLFKERGDD 511
L +R DGPF VL+RIN+NAY +DL G+Y VS +FN++DL PF D DL++N F+ DD
Sbjct: 1691 LMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNSFNVADLFPFIADNTDLRSNPFQLGEDD 1750
Score = 58.2 bits (139), Expect(2) = 1e-31
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
DCLP EFAYN S+HS S +SPF++VYGF +E +LDG+KK+ +
Sbjct: 1581 DCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAEL 1636
>emb|CAN64020.1| hypothetical protein VITISV_008811 [Vitis vinifera]
Length = 1089
Score = 89.7 bits (221), Expect(3) = 3e-31
Identities = 47/105 (44%), Positives = 58/105 (55%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
R +IE GR++++ P DWVWVH RKERFP +SKL GDGPF V ER
Sbjct: 940 RKHIEMKNEQYATKANKGRRQVLFEPGDWVWVHMRKERFPTHGRSKLHPXGDGPFQVPER 999
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDD 511
INDNAYK+DLPG+ D + N F+ERG+D
Sbjct: 1000 INDNAYKLDLPGD-------------------DSRMNPFEERGND 1025
Score = 69.7 bits (169), Expect(3) = 3e-31
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
DCLPF EF+YNRS+HST+ +SPF++VYGF NE+++LDGEKK+ +
Sbjct: 876 DCLPFIEFSYNRSVHSTTNFSPFKIVYGFNPLTPLDLLLLPVNEMTSLDGEKKAEM 931
Score = 21.9 bits (45), Expect(3) = 3e-31
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 154 KKKAELVKSLHE 189
+KKAE+VK LH+
Sbjct: 926 EKKAEMVKKLHD 937
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 107 bits (268), Expect(2) = 4e-31
Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Frame = +2
Query: 251 RKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLERINDNAYKIDLPGEYGVSA 430
RKK+ P D VWVH RK+RFP ++KSKL RGDGPF VL +INDNAYKI+LP +YGVS
Sbjct: 443 RKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSP 502
Query: 431 TFNISDLSPF---DMDADLKTNLFKERGDDTD 517
TFN++DL+PF + ++ F+E DD D
Sbjct: 503 TFNVADLTPFFGLEDSESSRSTPFQEGEDDED 534
Score = 52.8 bits (125), Expect(2) = 4e-31
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEK 158
+CLP EFAYNR++HST+ PFE+VYGFK E S+++ K
Sbjct: 361 ECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPLQERSDMEASK 412
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 105 bits (263), Expect(2) = 9e-30
Identities = 52/110 (47%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
+ NIE GRK++ P D VW+H RKERFP +KSKL R DGPF VLE+
Sbjct: 1457 KENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEK 1516
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPF---DMDADLKTNLFKERGDDTD 517
INDNAY++DLP ++GVS TFNI+DL P+ +++ + +T +E +D D
Sbjct: 1517 INDNAYRLDLPADFGVSPTFNIADLKPYLGEEVELESRTTQMQEGENDED 1566
Score = 50.1 bits (118), Expect(2) = 9e-30
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
DCLP EFAYNRS+HST+ PF++VYG +E N D +++ +
Sbjct: 1393 DCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAEL 1448
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 102 bits (254), Expect(2) = 2e-29
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
+ NIE GRK +V P D VW+H RK+RFP+ +KSKL R GPF VLE+
Sbjct: 1513 KENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEK 1572
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDAD---LKTNLFKERGDDTD 517
INDNAY+++LP ++GVS TFNI+DL P+ + D +T +E DD D
Sbjct: 1573 INDNAYRLELPADFGVSPTFNIADLKPYLGEEDELPSRTTSVQEGEDDED 1622
Score = 52.4 bits (124), Expect(2) = 2e-29
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
+CLP EFAYNRS+HST+ PFE+VYGF +E N D ++++ +
Sbjct: 1449 ECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAEL 1504
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 105 bits (262), Expect(2) = 3e-29
Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 3/110 (2%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
+ NIE GR++L P D VW+H RKERFP+ +KSKL R DGPF VL +
Sbjct: 1454 KENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAK 1513
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPF---DMDADLKTNLFKERGDDTD 517
IN+NAYKIDLP ++GVS TFN++DL P+ + + + +T +E DD D
Sbjct: 1514 INENAYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQEGEDDED 1563
Score = 48.9 bits (115), Expect(2) = 3e-29
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
+CLP EFAYNRS+HST+ PF++VYG +E N D ++++ +
Sbjct: 1390 ECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAEL 1445
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 102 bits (253), Expect(2) = 3e-29
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
+ NIE GRK +V P D VW+H RK+RFP+ +KSKL R GPF VLE+
Sbjct: 1510 KENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEK 1569
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPFDMDAD---LKTNLFKERGDDTD 517
INDNAY+++LP ++GVS TFNI+DL P+ + D +T +E DD D
Sbjct: 1570 INDNAYRLELPXDFGVSPTFNIADLKPYLGEEDELPSRTTSVQEGEDDED 1619
Score = 52.4 bits (124), Expect(2) = 3e-29
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
+CLP EFAYNRS+HST+ PFE+VYGF +E N D ++++ +
Sbjct: 1446 ECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAEL 1501
>gb|AAQ72730.1| putative integrase [Petunia x hybrida]
Length = 437
Score = 107 bits (267), Expect(2) = 4e-29
Identities = 54/109 (49%), Positives = 70/109 (64%)
Frame = +2
Query: 191 RARANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVL 370
+A+ N+E GRKK+ L D+VWVHFRKERFPN +K KL RGDGPF VL
Sbjct: 226 KAKKNLEESYAKVAAKKNKGRKKVELKKGDYVWVHFRKERFPNLRKGKLAPRGDGPFQVL 285
Query: 371 ERINDNAYKIDLPGEYGVSATFNISDLSPFDMDADLKTNLFKERGDDTD 517
+IN+NAY +DLP EY VS TFN+SDL P ++ + N +E +D +
Sbjct: 286 SKINNNAYVVDLPSEYQVSNTFNVSDLVPLNVGNEEVVNDDEEVVNDDE 334
Score = 46.6 bits (109), Expect(2) = 4e-29
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSR 167
D LP EFAYNR++HS G +PFE VYGF + N +G+ +++
Sbjct: 164 DRLPMMEFAYNRTLHSMIGMTPFECVYGFNPLIPLDLTPLPREMVVNFEGKARAK 218
>gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550404|gb|ABA93201.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1297
Score = 104 bits (259), Expect(2) = 6e-29
Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 3/110 (2%)
Frame = +2
Query: 197 RANIEXXXXXXXXXXXXGRKKLVLMPRDWVWVHFRKERFPNQKKSKLDARGDGPFLVLER 376
+ NIE GR++L P D VW+H RKERFP+ +KSKL R DGPF VL +
Sbjct: 1122 KENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAK 1181
Query: 377 INDNAYKIDLPGEYGVSATFNISDLSPF---DMDADLKTNLFKERGDDTD 517
IN+NAYKIDLP ++GVS TFN++DL P+ + + + +T +E DD D
Sbjct: 1182 INENAYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQEGEDDED 1231
Score = 48.9 bits (115), Expect(2) = 6e-29
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 3 DCLPFFEFAYNRSIHSTSGYSPFELVYGFKXXXXXXXXXXXXNELSNLDGEKKSRI 170
+CLP EFAYNRS+HST+ PF++VYG +E N D ++++ +
Sbjct: 1058 ECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAEL 1113