BLASTX nr result
ID: Jatropha_contig00018498
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00018498
(581 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot escule... 159 2e-64
gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia in... 146 3e-59
gb|AFB77004.1| DNA-directed RNA polymerase beta' chain, partial ... 136 2e-56
ref|YP_001123453.1| RNA polymerase beta' subunit [Crucihimalaya ... 139 4e-55
gb|AFB77001.1| DNA-directed RNA polymerase beta' chain, partial ... 132 4e-55
ref|YP_740466.1| RNA polymerase beta [Citrus sinensis] gi|122166... 137 5e-55
gb|AFK81464.1| RNA polymerase beta [Camellia taliensis] 140 8e-55
gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma af... 136 2e-54
ref|YP_007317239.1| RNA polymerase beta' subunit (chloroplast) [... 139 2e-54
ref|YP_008593102.1| DNA-directed RNA polymerase beta' subunit (c... 139 2e-54
ref|YP_008520130.1| DNA-directed RNA polymerase beta' subunit (c... 139 2e-54
ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (c... 139 2e-54
ref|YP_008592748.1| DNA-directed RNA polymerase beta' subunit (c... 139 2e-54
ref|YP_005089325.1| rpoC1 gene product (chloroplast) [Silene vul... 135 2e-54
gb|AFK81377.1| RNA polymerase beta [Camellia oleifera] 139 2e-54
gb|AFK81290.1| RNA polymerase beta [Camellia sinensis var. assam... 139 2e-54
ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (c... 139 1e-53
emb|CDJ38610.1| RNA polymerase beta' subunit (chloroplast) [Schw... 133 2e-53
ref|YP_004940501.1| rpoC1 gene product (chloroplast) [Boea hygro... 133 3e-53
ref|YP_001294261.1| RNA polymerase beta [Illicium oligandrum] gi... 136 4e-53
>ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot esculenta]
gi|212288297|sp|B1NWE1.1|RPOC1_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|157695876|gb|ABV66145.1| RNA polymerase beta [Manihot
esculenta]
Length = 680
Score = 159 bits (401), Expect(2) = 2e-64
Identities = 76/93 (81%), Positives = 80/93 (86%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
L A+R+KRI+LDSPLWLRWQLDQRAI SREA TYHEIYEHYLIVRNIKKEI
Sbjct: 588 LGAYRQKRIHLDSPLWLRWQLDQRAITSREAPIEVHYESLGTYHEIYEHYLIVRNIKKEI 647
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDGI 465
+CIYIRTTVGHIS YREIEEAIQGFCQACSDGI
Sbjct: 648 LCIYIRTTVGHISLYREIEEAIQGFCQACSDGI 680
Score = 113 bits (283), Expect(2) = 2e-64
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGICANRYNPC R+ Q +R D NN+ YTKEP FSNSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDGNNDKYTKEPLFSNSYD 586
Query: 183 AIGRFSAKK 209
A+G + K+
Sbjct: 587 ALGAYRQKR 595
>gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia indica]
Length = 689
Score = 146 bits (368), Expect(2) = 3e-59
Identities = 69/92 (75%), Positives = 76/92 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ AFR+KRINLDSPLWLRW+LDQR I SREA TYHEIY HYLIVR++KKEI
Sbjct: 597 IGAFRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 656
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDG 462
+CIYIRTTVGHIS YREIEEAIQGFC+ACS G
Sbjct: 657 LCIYIRTTVGHISLYREIEEAIQGFCRACSYG 688
Score = 108 bits (271), Expect(2) = 3e-59
Identities = 54/71 (76%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDD--NNNNYTKEPFFSNS 176
PIS+PTQDMLIGLYVLTSGNRRGICA RYNPC K Q ER DD NN YTKEP FSNS
Sbjct: 534 PISIPTQDMLIGLYVLTSGNRRGICATRYNPCNCKNYQNERIDDITNNYKYTKEPLFSNS 593
Query: 177 YDAIGRFSAKK 209
YDAIG F K+
Sbjct: 594 YDAIGAFRQKR 604
>gb|AFB77004.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Portulacaria afra]
Length = 668
Score = 136 bits (343), Expect(2) = 2e-56
Identities = 65/90 (72%), Positives = 72/90 (80%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+ +KRINLDSPLWLRW+LDQR I SREA TYHEIY HYLIVR++KKEI
Sbjct: 579 IGAYHQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 638
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
I IYIRTTVGHI YREIEEAIQGFC+ACS
Sbjct: 639 IFIYIRTTVGHIYLYREIEEAIQGFCRACS 668
Score = 108 bits (271), Expect(2) = 2e-56
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGIC+NRYNP K Q ER DDNN YTKEP F NSYD
Sbjct: 518 PISVPTQDMLIGLYVLTSGNRRGICSNRYNPWNHKNYQNERIDDNNYKYTKEPXFCNSYD 577
Query: 183 AIGRFSAKK 209
AIG + K+
Sbjct: 578 AIGAYHQKR 586
>ref|YP_001123453.1| RNA polymerase beta' subunit [Crucihimalaya wallichii]
gi|212288281|sp|A4QKS2.1|RPOC1_CRUWA RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|134286654|dbj|BAF50277.1| RNA polymerase beta
subunit-1 [Crucihimalaya wallichii]
Length = 680
Score = 139 bits (349), Expect(2) = 4e-55
Identities = 66/88 (75%), Positives = 70/88 (79%)
Frame = +1
Query: 193 AFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEIIC 372
A+R+KRINLDSPLWLRWQLDQR I SRE YHEIY HYLIVR++KKE C
Sbjct: 590 AYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKETYC 649
Query: 373 IYIRTTVGHISFYREIEEAIQGFCQACS 456
IYIRTTVGHISFYREIEEAIQGF QACS
Sbjct: 650 IYIRTTVGHISFYREIEEAIQGFSQACS 677
Score = 102 bits (254), Expect(2) = 4e-55
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSG RRGICANRYNPC K + ER + N YTKEPFF NSYD
Sbjct: 527 PISVPTQDMLIGLYVLTSGTRRGICANRYNPCNPKNYKNERIYETNYKYTKEPFFCNSYD 586
Query: 183 AIGRFSAKK 209
A G + K+
Sbjct: 587 ANGAYRQKR 595
>gb|AFB77001.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Maihuenia poeppigii]
Length = 668
Score = 132 bits (333), Expect(2) = 4e-55
Identities = 64/90 (71%), Positives = 71/90 (78%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TYHEIY HYLIVR++KKEI
Sbjct: 579 IGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 638
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
IYIRTTVGHI YREIEEAIQGF +ACS
Sbjct: 639 FFIYIRTTVGHIYLYREIEEAIQGFFRACS 668
Score = 108 bits (270), Expect(2) = 4e-55
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PISVPTQ+MLIGLYVLTSGNRRGICANRYNP K Q ER DDNN YTKEP F NSYD
Sbjct: 518 PISVPTQEMLIGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDNNYKYTKEPXFCNSYD 577
Query: 183 AIGRFSAKK 209
AIG + K+
Sbjct: 578 AIGAYRQKR 586
>ref|YP_740466.1| RNA polymerase beta [Citrus sinensis]
gi|122166192|sp|Q09MI7.1|RPOC1_CITSI RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|113952613|gb|ABI49011.1| RNA polymerase beta [Citrus
sinensis]
Length = 680
Score = 137 bits (346), Expect(2) = 5e-55
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA T HEIY HYLIVR++KKEI
Sbjct: 588 IGAYRQKRINLDSPLWLRWRLDQRLIASREAPIEVHYESLGTSHEIYGHYLIVRSVKKEI 647
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDG 462
+ IYIRTTVGHIS YREIEEAIQGFC+ACS G
Sbjct: 648 LSIYIRTTVGHISLYREIEEAIQGFCRACSYG 679
Score = 103 bits (256), Expect(2) = 5e-55
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PIS+PTQDMLIGLYVLTSGNRRGICANRYN R+ ER DDN+ YTKEP F NSYD
Sbjct: 527 PISIPTQDMLIGLYVLTSGNRRGICANRYNTWNRRNYPDERIDDNSYTYTKEPLFCNSYD 586
Query: 183 AIGRFSAKK 209
AIG + K+
Sbjct: 587 AIGAYRQKR 595
>gb|AFK81464.1| RNA polymerase beta [Camellia taliensis]
Length = 683
Score = 140 bits (354), Expect(2) = 8e-55
Identities = 68/90 (75%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRWQLDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 591 IGAYRQKRINLDSPLWLRWQLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 650
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 651 LSIYIRTTVGHISLYREIEEAIQGFCQACS 680
Score = 99.4 bits (246), Expect(2) = 8e-55
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 528 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 587
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 588 YDAIGAYRQKR 598
>gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma aff. cuneifolia
Moore 333]
Length = 703
Score = 136 bits (342), Expect(2) = 2e-54
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
L A+++KRI LDSPLW RW+LDQR I SRE TYHEIY HYLIVR++KKEI
Sbjct: 590 LGAYQQKRITLDSPLWFRWRLDQRVIASREVPVEVQYESLGTYHEIYGHYLIVRSVKKEI 649
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+CIYIRTTVGHISFYREIEEAIQGF +ACS
Sbjct: 650 LCIYIRTTVGHISFYREIEEAIQGFWRACS 679
Score = 102 bits (255), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PISVPTQDMLIGLYVLT GNRRGICANRYNPC + Q +R DDNN YT KEP+F +S
Sbjct: 527 PISVPTQDMLIGLYVLTIGNRRGICANRYNPCNHRNYQNKRIDDNNEKYTKEKEPYFCSS 586
Query: 177 YDAIGRFSAKK 209
YD +G + K+
Sbjct: 587 YDVLGAYQQKR 597
>ref|YP_007317239.1| RNA polymerase beta' subunit (chloroplast) [Camellia sinensis]
gi|430728263|gb|AGA55587.1| RNA polymerase beta' subunit
(chloroplast) [Camellia sinensis]
Length = 692
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 600 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 659
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 660 LSIYIRTTVGHISLYREIEEAIQGFCQACS 689
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 537 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 596
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 597 YDAIGAYRQKR 607
>ref|YP_008593102.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
yunnanensis] gi|537362855|gb|AGU44658.1| DNA-directed
RNA polymerase beta' subunit (chloroplast) [Camellia
yunnanensis]
Length = 686
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 594 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 653
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 654 LSIYIRTTVGHISLYREIEEAIQGFCQACS 683
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 531 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 590
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 591 YDAIGAYRQKR 601
>ref|YP_008520130.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
taliensis] gi|537362675|gb|AGU44480.1| DNA-directed RNA
polymerase beta' subunit (chloroplast) [Camellia
taliensis] gi|537362945|gb|AGU44747.1| DNA-directed RNA
polymerase beta' subunit (chloroplast) [Camellia
taliensis]
Length = 686
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 594 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 653
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 654 LSIYIRTTVGHISLYREIEEAIQGFCQACS 683
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 531 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 590
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 591 YDAIGAYRQKR 601
>ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
danzaiensis] gi|552546184|ref|YP_008593013.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia pitardii] gi|537362497|gb|AGU44304.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia danzaiensis] gi|537362765|gb|AGU44569.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia pitardii]
Length = 686
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 594 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 653
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 654 LSIYIRTTVGHISLYREIEEAIQGFCQACS 683
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 531 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 590
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 591 YDAIGAYRQKR 601
>ref|YP_008592748.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
cuspidata] gi|537362407|gb|AGU44215.1| DNA-directed RNA
polymerase beta' subunit (chloroplast) [Camellia
cuspidata]
Length = 686
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 594 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 653
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 654 LSIYIRTTVGHISLYREIEEAIQGFCQACS 683
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 531 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 590
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 591 YDAIGAYRQKR 601
>ref|YP_005089325.1| rpoC1 gene product (chloroplast) [Silene vulgaris]
gi|329755677|gb|AEC04238.1| RNA polymerase beta
(chloroplast) [Silene vulgaris]
Length = 684
Score = 135 bits (341), Expect(2) = 2e-54
Identities = 66/92 (71%), Positives = 72/92 (78%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+ +KRINLDSPLWLRW+LDQR I SREA TYHEIY HYLI+RNIKKEI
Sbjct: 588 IGAYCQKRINLDSPLWLRWRLDQRIIASREAPVEVHYESLGTYHEIYAHYLIIRNIKKEI 647
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDG 462
I +YIRTTVGHI YREIEEAIQGF QACS G
Sbjct: 648 IFVYIRTTVGHIYLYREIEEAIQGFSQACSYG 679
Score = 102 bits (255), Expect(2) = 2e-54
Identities = 48/69 (69%), Positives = 53/69 (76%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PISVPTQDMLIGLY+LTSG RRGICANRYNP RK Q +R DD N Y +EP F NSYD
Sbjct: 527 PISVPTQDMLIGLYILTSGTRRGICANRYNPWNRKNDQNKRIDDKNYKYMEEPLFCNSYD 586
Query: 183 AIGRFSAKK 209
AIG + K+
Sbjct: 587 AIGAYCQKR 595
>gb|AFK81377.1| RNA polymerase beta [Camellia oleifera]
Length = 683
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 591 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 650
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 651 LSIYIRTTVGHISLYREIEEAIQGFCQACS 680
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 528 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 587
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 588 YDAIGAYRQKR 598
>gb|AFK81290.1| RNA polymerase beta [Camellia sinensis var. assamica]
Length = 683
Score = 139 bits (350), Expect(2) = 2e-54
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 591 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 650
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 651 LSIYIRTTVGHISLYREIEEAIQGFCQACS 680
Score = 99.4 bits (246), Expect(2) = 2e-54
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP R+ Q ER DDNN YT KEP F NS
Sbjct: 528 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNRRNYQNERIDDNNYKYTKEKEPLFCNS 587
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 588 YDAIGAYRQKR 598
>ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
impressinervis] gi|537362585|gb|AGU44391.1| DNA-directed
RNA polymerase beta' subunit (chloroplast) [Camellia
impressinervis]
Length = 686
Score = 139 bits (350), Expect(2) = 1e-53
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SREA TY+EIY HYLIVR+IKKEI
Sbjct: 594 IGAYRQKRINLDSPLWLRWRLDQRVISSREAPIEVHYESLGTYYEIYGHYLIVRSIKKEI 653
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACS 456
+ IYIRTTVGHIS YREIEEAIQGFCQACS
Sbjct: 654 LSIYIRTTVGHISLYREIEEAIQGFCQACS 683
Score = 97.1 bits (240), Expect(2) = 1e-53
Identities = 47/71 (66%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PI VPTQDML+GLY+LTSGN RGIC NRYNP + Q ER DDNN YT KEP F NS
Sbjct: 531 PICVPTQDMLMGLYILTSGNHRGICVNRYNPYNSRNYQNERIDDNNYKYTKEKEPLFCNS 590
Query: 177 YDAIGRFSAKK 209
YDAIG + K+
Sbjct: 591 YDAIGAYRQKR 601
>emb|CDJ38610.1| RNA polymerase beta' subunit (chloroplast) [Schwalbea americana]
Length = 685
Score = 133 bits (335), Expect(2) = 2e-53
Identities = 65/92 (70%), Positives = 73/92 (79%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SRE TY+EIY HYLIVR+IKKEI
Sbjct: 593 IGAYRQKRINLDSPLWLRWRLDQRVIASREIPIEVHYESLGTYYEIYGHYLIVRSIKKEI 652
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDG 462
+ IYIR+TVGHIS YREIEEAIQGF QACS G
Sbjct: 653 LFIYIRSTVGHISLYREIEEAIQGFSQACSYG 684
Score = 102 bits (253), Expect(2) = 2e-53
Identities = 49/69 (71%), Positives = 55/69 (79%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PIS+PTQDMLIGLY+LTSGNRRGIC NRYNP R+ Q +R D NN YTKEP FSNSYD
Sbjct: 534 PISIPTQDMLIGLYILTSGNRRGICVNRYNPWNRRNYQNKRSD--NNKYTKEPLFSNSYD 591
Query: 183 AIGRFSAKK 209
AIG + K+
Sbjct: 592 AIGAYRQKR 600
>ref|YP_004940501.1| rpoC1 gene product (chloroplast) [Boea hygrometrica]
gi|340549398|gb|AEK53220.1| RNA polymerase beta
(chloroplast) [Boea hygrometrica]
Length = 691
Score = 133 bits (335), Expect(2) = 3e-53
Identities = 65/92 (70%), Positives = 73/92 (79%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
+ A+R+KRINLDSPLWLRW+LDQR I SRE TY+EIY HYLIVR+IKKEI
Sbjct: 599 IGAYRQKRINLDSPLWLRWRLDQRVISSRETPIEVHYESLGTYYEIYGHYLIVRSIKKEI 658
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDG 462
+ IYIRTTVGHIS YREIEE+IQGF QACS G
Sbjct: 659 LFIYIRTTVGHISLYREIEESIQGFSQACSYG 690
Score = 101 bits (251), Expect(2) = 3e-53
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYTKEPFFSNSYD 182
PISVPTQDMLIGLYVLTSGNRRGIC NRYN + Q +R D+ N NYTKEP FSNSYD
Sbjct: 538 PISVPTQDMLIGLYVLTSGNRRGICINRYNRWNHRDYQNKRGDNKNYNYTKEPLFSNSYD 597
Query: 183 AIGRFSAKK 209
AIG + K+
Sbjct: 598 AIGAYRQKR 606
>ref|YP_001294261.1| RNA polymerase beta [Illicium oligandrum]
gi|212288291|sp|A6MMT5.1|RPOC1_ILLOL RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|147917386|gb|ABQ52510.1| RNA polymerase beta
[Illicium oligandrum]
Length = 689
Score = 136 bits (343), Expect(2) = 4e-53
Identities = 65/92 (70%), Positives = 73/92 (79%)
Frame = +1
Query: 187 LAAFRRKRINLDSPLWLRWQLDQRAIVSREAXXXXXXXXXXTYHEIYEHYLIVRNIKKEI 366
L A+R+KRINL SPLWLRW+LDQR I SRE TYHEIY HY IVR+IKKEI
Sbjct: 597 LGAYRQKRINLYSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYQIVRSIKKEI 656
Query: 367 ICIYIRTTVGHISFYREIEEAIQGFCQACSDG 462
+CIYIRTT+GHISFYREIEEA+QGFC+A S G
Sbjct: 657 LCIYIRTTIGHISFYREIEEAVQGFCRAYSYG 688
Score = 97.8 bits (242), Expect(2) = 4e-53
Identities = 48/71 (67%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 PISVPTQDMLIGLYVLTSGNRRGICANRYNPCIRKISQKERFDDNNNNYT--KEPFFSNS 176
PISVPTQDMLIGLYVLT GN RGICANRYNPC + Q E DDNN YT KEP F +S
Sbjct: 534 PISVPTQDMLIGLYVLTIGNHRGICANRYNPCNYRNYQNETVDDNNYQYTKEKEPHFCSS 593
Query: 177 YDAIGRFSAKK 209
YDA+G + K+
Sbjct: 594 YDALGAYRQKR 604