BLASTX nr result

ID: Jatropha_contig00018428 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00018428
         (687 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002720170.1| ycf1 [Jatropha curcas] gi|224979621|gb|ACN72...   231   3e-79
ref|YP_004327719.1| hypothetical chloroplast RF1 [Hevea brasilie...   189   2e-68
ref|YP_005090236.1| ycf1 gene product (chloroplast) [Ricinus com...   186   3e-62
gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua]         150   7e-52
gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina]         149   1e-50
ref|YP_005296157.1| ycf1 gene product (chloroplast) [Pentactina ...   145   7e-48
gb|ADD30912.1| putative RF1 protein [Ximenia americana]               132   3e-46
ref|YP_004072518.1| hypothetical protein ColaC_p079 [Corynocarpu...   139   6e-46
ref|YP_007025526.1| hypothetical chloroplast RF1 (chloroplast) [...   139   1e-45
ref|YP_007025441.1| hypothetical chloroplast RF1 (chloroplast) [...   139   1e-45
ref|YP_004286160.1| hypothetical chloroplast RF1 [Fragaria vesca...   139   1e-45
ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [...   130   1e-45
ref|YP_008082790.1| hypothetical chloroplast RF19 [Prinsepia uti...   130   4e-45
gb|AGL13489.1| hypothetical chloroplast RF19 (chloroplast) [Liqu...   127   7e-45
ref|YP_004021722.1| hypothetical chloroplast RF1 [Prunus persica...   139   1e-44
ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [...   129   2e-44
dbj|BAO01635.1| hypothetical chloroplast RF1 (chloroplast) [Viti...   127   2e-44
dbj|BAO01551.1| hypothetical chloroplast RF1 (chloroplast) [Viti...   127   2e-44
ref|YP_567136.1| hypothetical chloroplast RF1 [Vitis vinifera] g...   127   2e-44
dbj|BAO01719.1| hypothetical chloroplast RF1 (chloroplast) [Viti...   126   4e-44

>ref|YP_002720170.1| ycf1 [Jatropha curcas] gi|224979621|gb|ACN72748.1| ycf1 [Jatropha
           curcas]
          Length = 1907

 Score =  231 bits (590), Expect(2) = 3e-79
 Identities = 120/136 (88%), Positives = 122/136 (89%)
 Frame = -2

Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
           YQ+FE KTDVKSFSTEIAY LNLINEFAGKSRSSLNFKELSLFPDHKEEK+DLENRIKIF
Sbjct: 548 YQKFEPKTDVKSFSTEIAYFLNLINEFAGKSRSSLNFKELSLFPDHKEEKMDLENRIKIF 607

Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
           KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDL            NMAEDHE
Sbjct: 608 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLEQQEGENEENEENMAEDHE 667

Query: 227 IRSRKAKRVVIFTDNQ 180
           IRSRKAKRVVIFTDNQ
Sbjct: 668 IRSRKAKRVVIFTDNQ 683



 Score = 90.5 bits (223), Expect(2) = 3e-79
 Identities = 45/45 (100%), Positives = 45/45 (100%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH
Sbjct: 698 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 742


>ref|YP_004327719.1| hypothetical chloroplast RF1 [Hevea brasiliensis]
           gi|308523562|gb|ADO33612.1| hypothetical chloroplast RF1
           [Hevea brasiliensis]
          Length = 1899

 Score =  189 bits (479), Expect(3) = 2e-68
 Identities = 105/139 (75%), Positives = 110/139 (79%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           YQEFE KTD    K+FS E AY LNLINEF GKSRSSLNFKEL LFPDHKEEK+ LENRI
Sbjct: 548 YQEFESKTDGFNRKAFSIENAYFLNLINEFVGKSRSSLNFKELPLFPDHKEEKMYLENRI 607

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           KI KFLF TVIAN KNKTI  NS GIKEISKQVPRWSYKLIDDL            NM+E
Sbjct: 608 KILKFLFHTVIANPKNKTIIKNSTGIKEISKQVPRWSYKLIDDL---EQQEGENEENMSE 664

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           D+EIRSRKAKRVVIFTDN+
Sbjct: 665 DYEIRSRKAKRVVIFTDNK 683



 Score = 78.6 bits (192), Expect(3) = 2e-68
 Identities = 39/45 (86%), Positives = 42/45 (93%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           SDQI++VTLI YSQQSDFRRDIIKGS+RAQRRKI I ELFQANVH
Sbjct: 698 SDQIEEVTLIHYSQQSDFRRDIIKGSVRAQRRKIAIWELFQANVH 742



 Score = 39.7 bits (91), Expect(3) = 2e-68
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
           KTSIKNSIEM+ INK HL LLI N     +K
Sbjct: 524 KTSIKNSIEMLWINKIHLILLITNYQEFESK 554


>ref|YP_005090236.1| ycf1 gene product (chloroplast) [Ricinus communis]
           gi|339516224|gb|AEJ82614.1| hypothetical chloroplast RF1
           [Ricinus communis]
          Length = 1805

 Score =  186 bits (473), Expect(2) = 3e-62
 Identities = 101/136 (74%), Positives = 111/136 (81%)
 Frame = -2

Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
           Y EFE KTD KSFSTEIAY LNLINEFAGKS SS NFK L LFPD+KEEK+DLE  ++I 
Sbjct: 552 YIEFEPKTDRKSFSTEIAYFLNLINEFAGKSTSSFNFKGLPLFPDYKEEKMDLE-LLQIL 610

Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
           KF+FD V+ANSKNKTI+NNS+GIKEI+KQVP WSYKLIDDL            NMAED+E
Sbjct: 611 KFVFDPVLANSKNKTIKNNSLGIKEINKQVPHWSYKLIDDL---EQQEGENEENMAEDYE 667

Query: 227 IRSRKAKRVVIFTDNQ 180
           IRSRKAKRVVIFTDNQ
Sbjct: 668 IRSRKAKRVVIFTDNQ 683



 Score = 79.0 bits (193), Expect(2) = 3e-62
 Identities = 39/44 (88%), Positives = 40/44 (90%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           DQID+VTLIRYSQQSDFRRDIIKGS RAQRRKI I ELFQAN H
Sbjct: 699 DQIDEVTLIRYSQQSDFRRDIIKGSTRAQRRKIAIFELFQANAH 742


>gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua]
          Length = 1882

 Score =  150 bits (380), Expect(3) = 7e-52
 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y+EFE K D+   KS ST+I   LNLI EFAG+S S+LN K LSLFP+  + ++D +++ 
Sbjct: 558 YREFEQKIDMFDSKSLSTKIDNFLNLIGEFAGESTSNLNLKGLSLFPEQDQGRVDSKDQA 617

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           K FKFLFD +I + K++TIR  SIGIKEI K+VPRWSYKLIDDL            +++E
Sbjct: 618 KFFKFLFDAIITDPKDQTIRKKSIGIKEIRKKVPRWSYKLIDDL---EQQEGENEEDVSE 674

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           DHEIRSRKAKRVVIFTDN+
Sbjct: 675 DHEIRSRKAKRVVIFTDNE 693



 Score = 73.6 bits (179), Expect(3) = 7e-52
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           D  D+V LIRYSQQSDFRRD+IKGSMRAQRRK  I ELFQANVH
Sbjct: 711 DPADEVALIRYSQQSDFRRDMIKGSMRAQRRKTAIFELFQANVH 754



 Score = 27.3 bits (59), Expect(3) = 7e-52
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
           +TSI NSIE + INK H  LL+ +      K
Sbjct: 534 ETSIVNSIETIWINKIHGILLVTDYREFEQK 564


>gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina]
          Length = 1909

 Score =  149 bits (375), Expect(3) = 1e-50
 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y+EFE K D    KS STEI +   LI+EFA +S SS N K LSLFP+ ++ ++D E+R 
Sbjct: 554 YREFEQKIDKLDKKSLSTEIGHFFTLISEFAVESPSSFNLKGLSLFPEQEQGRIDSEDRA 613

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           K F+FLFD VI +  ++TIR  SIGI E+SK+VPRWSYKLIDDL             +A 
Sbjct: 614 KFFEFLFDAVITDLNDQTIRKKSIGINEMSKKVPRWSYKLIDDLEQQEGGENEEEVAVAL 673

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           DHEIRSRKAKRVVIFTDNQ
Sbjct: 674 DHEIRSRKAKRVVIFTDNQ 692



 Score = 72.8 bits (177), Expect(3) = 1e-50
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +Q D+V LIRYSQQSDFRRDIIKGSMRAQRRK  I ELFQAN H
Sbjct: 705 EQADEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFQANAH 748



 Score = 26.2 bits (56), Expect(3) = 1e-50
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLL 598
           +TSI+NSIE V +NK H  LL
Sbjct: 531 ETSIENSIETVWLNKIHGILL 551


>ref|YP_005296157.1| ycf1 gene product (chloroplast) [Pentactina rupicola]
           gi|371532678|gb|AEX31788.1| hypothetical chloroplast RF1
           (chloroplast) [Pentactina rupicola]
          Length = 1879

 Score =  145 bits (365), Expect(3) = 7e-48
 Identities = 84/141 (59%), Positives = 101/141 (71%), Gaps = 5/141 (3%)
 Frame = -2

Query: 587 YQEFELK---TDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y EFE K    D KS +TEI+ +LNLINE A K  SSLN K L L P+H++ ++D E+RI
Sbjct: 550 YLEFEQKKNPVDRKSLATEISSLLNLINELAVKWASSLNSKGLFLVPEHEQVRIDSEDRI 609

Query: 416 KIFKFLFDTVIANSKNKTIRN--NSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243
           KIFKFLFD VI    +KTI+N   SIGI+EI+K+VPRWSYKLI+DL            ++
Sbjct: 610 KIFKFLFDAVITVPNDKTIKNQSKSIGIQEINKKVPRWSYKLINDL---EQQEGETEESV 666

Query: 242 AEDHEIRSRKAKRVVIFTDNQ 180
            EDHEIRSRKAKRVVIFTDNQ
Sbjct: 667 VEDHEIRSRKAKRVVIFTDNQ 687



 Score = 66.6 bits (161), Expect(3) = 7e-48
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANV 5
           +DQ D+V LIRYSQQSDFRRDIIKGS+RAQRRK    + FQANV
Sbjct: 702 TDQTDEVALIRYSQQSDFRRDIIKGSVRAQRRKTVTWKFFQANV 745



 Score = 26.6 bits (57), Expect(3) = 7e-48
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 660 KTSIKNSIEMVR--INKNHLFLLIINLSRIRTK 568
           + SIKN IE+ R  INK H  LLIIN      K
Sbjct: 524 EASIKNYIEIERVWINKIHGILLIINYLEFEQK 556


>gb|ADD30912.1| putative RF1 protein [Ximenia americana]
          Length = 1895

 Score =  132 bits (333), Expect(3) = 3e-46
 Identities = 76/141 (53%), Positives = 96/141 (68%), Gaps = 5/141 (3%)
 Frame = -2

Query: 587 YQEFELKTD----VKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENR 420
           Y+EF+ K D     K+ STEI + + LI+EFA +S  S N K LSLFP+  + ++D E R
Sbjct: 554 YREFKQKIDNTFDKKALSTEIGHFVTLISEFAEESTPSFNLKRLSLFPE--QGRIDSEGR 611

Query: 419 IKIFKFLFDTVIANSKN-KTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243
            K +KFLFD ++ +  N KTIR  SIG+K+ISK+VPRWSYKLID+L             +
Sbjct: 612 KKNWKFLFDAILTDPNNQKTIRKKSIGVKKISKKVPRWSYKLIDEL--EQQEGENEEDVV 669

Query: 242 AEDHEIRSRKAKRVVIFTDNQ 180
            EDHEIRSRKAKRVVIFTDNQ
Sbjct: 670 VEDHEIRSRKAKRVVIFTDNQ 690



 Score = 74.7 bits (182), Expect(3) = 3e-46
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           DQ D+V+LIRYSQQSDFRRDIIKGSMRAQRRK  I ELF+ANVH
Sbjct: 706 DQTDEVSLIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFRANVH 749



 Score = 25.4 bits (54), Expect(3) = 3e-46
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNH 610
           +TSI+NSIE V INK H
Sbjct: 531 ETSIENSIETVWINKIH 547


>ref|YP_004072518.1| hypothetical protein ColaC_p079 [Corynocarpus laevigata]
           gi|309252946|gb|ADO60366.1| hypothetical protein
           [Corynocarpus laevigata]
          Length = 1852

 Score =  139 bits (351), Expect(3) = 6e-46
 Identities = 81/140 (57%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
 Frame = -2

Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDL--EN 423
           YQ+ E K D     S S EI+Y LNLI+ F GKS ++ NFK LSLFP HK+  ++   E+
Sbjct: 549 YQKMEHKMDPLERNSLSKEISYFLNLISGFTGKS-TNFNFKGLSLFPKHKQVIIESNSED 607

Query: 422 RIKIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243
           RIKI KFLFD VI +  +KTIR  SIGIKEISK+VPRWSYKLI+DL            ++
Sbjct: 608 RIKILKFLFDAVITDYNDKTIRKKSIGIKEISKKVPRWSYKLINDL---EQEHGENAESL 664

Query: 242 AEDHEIRSRKAKRVVIFTDN 183
            EDHEIRSRKAKRV+I+TDN
Sbjct: 665 TEDHEIRSRKAKRVIIYTDN 684



 Score = 70.9 bits (172), Expect(3) = 6e-46
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           DQ D+V LIRYSQ SDFRRDIIKGSMRAQRRK  I +LFQANVH
Sbjct: 701 DQPDEVALIRYSQLSDFRRDIIKGSMRAQRRKTVIWKLFQANVH 744



 Score = 21.2 bits (43), Expect(3) = 6e-46
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
           KTS KN  E   INK H   +  N  ++  K
Sbjct: 525 KTSRKNDRENTFINKIHGIFVNTNYQKMEHK 555


>ref|YP_007025526.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria virginiana]
           gi|357198883|gb|AET62798.1| hypothetical chloroplast RF1
           (chloroplast) [Fragaria virginiana]
          Length = 1916

 Score =  139 bits (349), Expect(3) = 1e-45
 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
 Frame = -2

Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411
           EFE K    D K++  ++ Y+LNLINEFA KS SSLNFK   L P+H++ ++D E+RIKI
Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620

Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231
           FKFLFD  I     KTI+  SI +KEI K+VPRWSYKLI+DL               E+H
Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677

Query: 230 EIRSRKAKRVVIFTDNQ 180
           +IRSRKAKRVVIFTDNQ
Sbjct: 678 QIRSRKAKRVVIFTDNQ 694



 Score = 67.0 bits (162), Expect(3) = 1e-45
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI   + F+A+VH
Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753



 Score = 25.0 bits (53), Expect(3) = 1e-45
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589
           +S KN +E   INK H  LLIIN
Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558


>ref|YP_007025441.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria chiloensis]
           gi|357198797|gb|AET62713.1| hypothetical chloroplast RF1
           (chloroplast) [Fragaria chiloensis]
          Length = 1916

 Score =  139 bits (349), Expect(3) = 1e-45
 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
 Frame = -2

Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411
           EFE K    D K++  ++ Y+LNLINEFA KS SSLNFK   L P+H++ ++D E+RIKI
Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620

Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231
           FKFLFD  I     KTI+  SI +KEI K+VPRWSYKLI+DL               E+H
Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677

Query: 230 EIRSRKAKRVVIFTDNQ 180
           +IRSRKAKRVVIFTDNQ
Sbjct: 678 QIRSRKAKRVVIFTDNQ 694



 Score = 67.0 bits (162), Expect(3) = 1e-45
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI   + F+A+VH
Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753



 Score = 25.0 bits (53), Expect(3) = 1e-45
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589
           +S KN +E   INK H  LLIIN
Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558


>ref|YP_004286160.1| hypothetical chloroplast RF1 [Fragaria vesca subsp. vesca]
           gi|324022835|gb|ADY15409.1| hypothetical chloroplast RF1
           [Fragaria vesca subsp. vesca]
          Length = 1916

 Score =  139 bits (349), Expect(3) = 1e-45
 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
 Frame = -2

Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411
           EFE K    D K++  ++ Y+LNLINEFA KS SSLNFK   L P+H++ ++D E+RIKI
Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620

Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231
           FKFLFD  I     KTI+  SI +KEI K+VPRWSYKLI+DL               E+H
Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677

Query: 230 EIRSRKAKRVVIFTDNQ 180
           +IRSRKAKRVVIFTDNQ
Sbjct: 678 QIRSRKAKRVVIFTDNQ 694



 Score = 67.0 bits (162), Expect(3) = 1e-45
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI   + F+A+VH
Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753



 Score = 25.0 bits (53), Expect(3) = 1e-45
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589
           +S KN +E   INK H  LLIIN
Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558


>ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense]
           gi|479279261|gb|AGJ72115.1| hypothetical chloroplast RF1
           (chloroplast) [Tetracentron sinense]
          Length = 1895

 Score =  130 bits (327), Expect(3) = 1e-45
 Identities = 76/139 (54%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y+EFE K    D K  ST+I + L  INEF G+S  S N KELSL  +  + ++  EN+ 
Sbjct: 545 YREFEHKIYTFDEKYLSTDIGHFLTSINEFTGESTPSFNLKELSLSAE--QGRIYSENKE 602

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           K  KFLFD VI +  ++ IR  SIGIKEISK+VPRWSYKLI+DL             +AE
Sbjct: 603 KFLKFLFDAVITDPNDQRIRKKSIGIKEISKKVPRWSYKLINDL---EQQEGGIEEEVAE 659

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           DHEIRSRKAKRVVIFTDN+
Sbjct: 660 DHEIRSRKAKRVVIFTDNE 678



 Score = 71.6 bits (174), Expect(3) = 1e-45
 Identities = 35/44 (79%), Positives = 40/44 (90%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +Q +++ LIRYSQQ+DFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 693 NQANEMALIRYSQQADFRRDIIKGSMRAQRRKIVIWELFQANVH 736



 Score = 28.9 bits (63), Expect(3) = 1e-45
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLL 598
           KTSI++SIEMV INK H  LL
Sbjct: 522 KTSIEDSIEMVWINKIHDILL 542


>ref|YP_008082790.1| hypothetical chloroplast RF19 [Prinsepia utilis]
           gi|501418879|gb|AGL94756.1| hypothetical chloroplast
           RF19 [Prinsepia utilis]
          Length = 1836

 Score =  130 bits (327), Expect(3) = 4e-45
 Identities = 74/139 (53%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y EFE K    D+KS STEI Y+LNLIN+ A KS SS NFK+L L P+H +  +D E++I
Sbjct: 508 YLEFEHKKNTFDIKSLSTEIGYLLNLINKLAVKSTSSFNFKKLILVPEHDQVIIDYEDQI 567

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           KI K LF  V   + +K I+   IGIKEI+K++P  SYKLI+DL            ++ E
Sbjct: 568 KILKLLFHKVRTFTNDKLIKKKIIGIKEINKKIPAQSYKLINDL---EQQEGETEESVVE 624

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           +H+IRSRKAKRVVIFTDNQ
Sbjct: 625 EHQIRSRKAKRVVIFTDNQ 643



 Score = 70.1 bits (170), Expect(3) = 4e-45
 Identities = 34/45 (75%), Positives = 38/45 (84%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +DQ D+V LIRYSQQ DFRRDIIKGSMRAQRRK    ++FQANVH
Sbjct: 658 TDQTDEVALIRYSQQPDFRRDIIKGSMRAQRRKTVTWKIFQANVH 702



 Score = 28.5 bits (62), Expect(3) = 4e-45
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
           + SIKN IE   INK H+ LLIIN
Sbjct: 484 EASIKNYIENGCINKIHVILLIIN 507


>gb|AGL13489.1| hypothetical chloroplast RF19 (chloroplast) [Liquidambar formosana]
          Length = 1878

 Score =  127 bits (319), Expect(3) = 7e-45
 Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y+EFE K D+   KS  T+            G+S S+ N K LSLFP+ ++ ++D +++ 
Sbjct: 563 YREFEQKIDMFDSKSLLTK------------GESTSNFNLKVLSLFPEQEQGRVDSKDQA 610

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           K FKFLFD +I + K++TIR  SIGIKEI K+VPRWSYKLIDDL            ++AE
Sbjct: 611 KFFKFLFDAIITDPKDQTIRKKSIGIKEIRKKVPRWSYKLIDDL---EQQEGENEEDVAE 667

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           DHEIRSRKAKRVVIFTDN+
Sbjct: 668 DHEIRSRKAKRVVIFTDNE 686



 Score = 73.6 bits (179), Expect(3) = 7e-45
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           D  D+V LIRYSQQSDFRRD+IKGSMRAQRRK  I ELFQANVH
Sbjct: 704 DPADEVALIRYSQQSDFRRDMIKGSMRAQRRKTAIFELFQANVH 747



 Score = 27.3 bits (59), Expect(3) = 7e-45
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
           +TSI NSIE + INK H  LL+ +      K
Sbjct: 539 ETSIVNSIETIWINKIHGMLLVTDYREFEQK 569


>ref|YP_004021722.1| hypothetical chloroplast RF1 [Prunus persica]
           gi|309321491|gb|ADO65032.1| hypothetical chloroplast RF1
           [Prunus persica]
          Length = 1871

 Score =  139 bits (350), Expect(2) = 1e-44
 Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
 Frame = -2

Query: 587 YQEFELKT------DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLE 426
           Y EFE KT      D KS  TEI Y+LNLINE A KS SSLNF+ L L P+H++ ++  E
Sbjct: 547 YLEFEQKTNPFDINDRKSLVTEIGYLLNLINELAVKSTSSLNFQRLFLVPEHEQVRIHSE 606

Query: 425 NRIKIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXN 246
           ++ KI  FLFD V     +KTI+  SI IKEI+K+VPRWSYKLI+DL            +
Sbjct: 607 DQFKILNFLFDAVRTVPNDKTIKKKSIEIKEINKRVPRWSYKLINDL---EQQEGETEES 663

Query: 245 MAEDHEIRSRKAKRVVIFTDN 183
           + EDHEIRSRKAKRVVIFTDN
Sbjct: 664 VVEDHEIRSRKAKRVVIFTDN 684



 Score = 67.4 bits (163), Expect(2) = 1e-44
 Identities = 33/45 (73%), Positives = 37/45 (82%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +DQ  ++ LIRYSQQ DFRRDIIKGSMRAQRRK    +LFQANVH
Sbjct: 700 TDQTAEIALIRYSQQPDFRRDIIKGSMRAQRRKTVTWKLFQANVH 744


>ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [Trochodendron
           aralioides] gi|290489080|gb|ADD30924.1| putative RF1
           protein [Trochodendron aralioides]
           gi|479279354|gb|AGJ72207.1| hypothetical chloroplast RF1
           (chloroplast) [Trochodendron aralioides]
          Length = 1896

 Score =  129 bits (325), Expect(3) = 2e-44
 Identities = 75/139 (53%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
 Frame = -2

Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
           Y+EFE K    D KS ST+I + L   NEF G+S  S N KELSL  +  + +++ EN+ 
Sbjct: 547 YREFEQKIYGFDGKSLSTDIGHFLTSTNEFTGESTPSFNLKELSLSAE--QGRIESENQE 604

Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
           K  KFLFD V  +  ++ IR  SIGIKEISK+VPRWSYKLI+DL             +AE
Sbjct: 605 KFLKFLFDAVRTDPNDQRIRKKSIGIKEISKKVPRWSYKLINDL---EQQEGGSEEEVAE 661

Query: 236 DHEIRSRKAKRVVIFTDNQ 180
           DHEIRSRKAKRVVIFTDN+
Sbjct: 662 DHEIRSRKAKRVVIFTDNE 680



 Score = 71.2 bits (173), Expect(3) = 2e-44
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = -3

Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           +Q ++V LIRYSQQ+DFRRDIIKGSMR QRRKI I ELFQANVH
Sbjct: 695 NQANEVALIRYSQQADFRRDIIKGSMRTQRRKIVIWELFQANVH 738



 Score = 25.8 bits (55), Expect(3) = 2e-44
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLL 598
           +TSI++SIE+V INK H  LL
Sbjct: 524 ETSIEDSIEIVWINKIHDILL 544


>dbj|BAO01635.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp.
           caucasica]
          Length = 1893

 Score =  127 bits (320), Expect(3) = 2e-44
 Identities = 71/136 (52%), Positives = 88/136 (64%)
 Frame = -2

Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
           Y+EFE   D KS ST+I Y LNLIN+F  +S S+LN K LSLFP+  +   D E++ K  
Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610

Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
            F FD VI + K++TIR  SIGIKEISK+VPRWSYKL+ +              +    E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662

Query: 227 IRSRKAKRVVIFTDNQ 180
           IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678



 Score = 75.9 bits (185), Expect(3) = 2e-44
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739



 Score = 23.1 bits (48), Expect(3) = 2e-44
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
           +TS +NSIE  RINK +  L  I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550


>dbj|BAO01551.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp.
           caucasica]
          Length = 1893

 Score =  127 bits (320), Expect(3) = 2e-44
 Identities = 71/136 (52%), Positives = 88/136 (64%)
 Frame = -2

Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
           Y+EFE   D KS ST+I Y LNLIN+F  +S S+LN K LSLFP+  +   D E++ K  
Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610

Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
            F FD VI + K++TIR  SIGIKEISK+VPRWSYKL+ +              +    E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662

Query: 227 IRSRKAKRVVIFTDNQ 180
           IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678



 Score = 75.9 bits (185), Expect(3) = 2e-44
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739



 Score = 23.1 bits (48), Expect(3) = 2e-44
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
           +TS +NSIE  RINK +  L  I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550


>ref|YP_567136.1| hypothetical chloroplast RF1 [Vitis vinifera]
           gi|118577986|sp|Q0ZIW0.1|YCF1_VITVI RecName:
           Full=Putative membrane protein ycf1; Short=RF1
           gi|91701709|gb|ABE47593.1| hypothetical chloroplast RF1
           [Vitis vinifera]
          Length = 1893

 Score =  127 bits (320), Expect(3) = 2e-44
 Identities = 71/136 (52%), Positives = 88/136 (64%)
 Frame = -2

Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
           Y+EFE   D KS ST+I Y LNLIN+F  +S S+LN K LSLFP+  +   D E++ K  
Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610

Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
            F FD VI + K++TIR  SIGIKEISK+VPRWSYKL+ +              +    E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662

Query: 227 IRSRKAKRVVIFTDNQ 180
           IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678



 Score = 75.9 bits (185), Expect(3) = 2e-44
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739



 Score = 23.1 bits (48), Expect(3) = 2e-44
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
           +TS +NSIE  RINK +  L  I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550


>dbj|BAO01719.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp.
           caucasica]
          Length = 1893

 Score =  126 bits (317), Expect(3) = 4e-44
 Identities = 70/136 (51%), Positives = 88/136 (64%)
 Frame = -2

Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
           Y+EFE   D KS ST++ Y LNLIN+F  +S S+LN K LSLFP+  +   D E++ K  
Sbjct: 551 YREFEHTFDRKSLSTKMGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610

Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
            F FD VI + K++TIR  SIGIKEISK+VPRWSYKL+ +              +    E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662

Query: 227 IRSRKAKRVVIFTDNQ 180
           IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678



 Score = 75.9 bits (185), Expect(3) = 4e-44
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = -3

Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
           S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739



 Score = 23.1 bits (48), Expect(3) = 4e-44
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
           +TS +NSIE  RINK +  L  I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550


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