BLASTX nr result
ID: Jatropha_contig00018428
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00018428
(687 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720170.1| ycf1 [Jatropha curcas] gi|224979621|gb|ACN72... 231 3e-79
ref|YP_004327719.1| hypothetical chloroplast RF1 [Hevea brasilie... 189 2e-68
ref|YP_005090236.1| ycf1 gene product (chloroplast) [Ricinus com... 186 3e-62
gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua] 150 7e-52
gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina] 149 1e-50
ref|YP_005296157.1| ycf1 gene product (chloroplast) [Pentactina ... 145 7e-48
gb|ADD30912.1| putative RF1 protein [Ximenia americana] 132 3e-46
ref|YP_004072518.1| hypothetical protein ColaC_p079 [Corynocarpu... 139 6e-46
ref|YP_007025526.1| hypothetical chloroplast RF1 (chloroplast) [... 139 1e-45
ref|YP_007025441.1| hypothetical chloroplast RF1 (chloroplast) [... 139 1e-45
ref|YP_004286160.1| hypothetical chloroplast RF1 [Fragaria vesca... 139 1e-45
ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [... 130 1e-45
ref|YP_008082790.1| hypothetical chloroplast RF19 [Prinsepia uti... 130 4e-45
gb|AGL13489.1| hypothetical chloroplast RF19 (chloroplast) [Liqu... 127 7e-45
ref|YP_004021722.1| hypothetical chloroplast RF1 [Prunus persica... 139 1e-44
ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [... 129 2e-44
dbj|BAO01635.1| hypothetical chloroplast RF1 (chloroplast) [Viti... 127 2e-44
dbj|BAO01551.1| hypothetical chloroplast RF1 (chloroplast) [Viti... 127 2e-44
ref|YP_567136.1| hypothetical chloroplast RF1 [Vitis vinifera] g... 127 2e-44
dbj|BAO01719.1| hypothetical chloroplast RF1 (chloroplast) [Viti... 126 4e-44
>ref|YP_002720170.1| ycf1 [Jatropha curcas] gi|224979621|gb|ACN72748.1| ycf1 [Jatropha
curcas]
Length = 1907
Score = 231 bits (590), Expect(2) = 3e-79
Identities = 120/136 (88%), Positives = 122/136 (89%)
Frame = -2
Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
YQ+FE KTDVKSFSTEIAY LNLINEFAGKSRSSLNFKELSLFPDHKEEK+DLENRIKIF
Sbjct: 548 YQKFEPKTDVKSFSTEIAYFLNLINEFAGKSRSSLNFKELSLFPDHKEEKMDLENRIKIF 607
Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDL NMAEDHE
Sbjct: 608 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLEQQEGENEENEENMAEDHE 667
Query: 227 IRSRKAKRVVIFTDNQ 180
IRSRKAKRVVIFTDNQ
Sbjct: 668 IRSRKAKRVVIFTDNQ 683
Score = 90.5 bits (223), Expect(2) = 3e-79
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH
Sbjct: 698 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 742
>ref|YP_004327719.1| hypothetical chloroplast RF1 [Hevea brasiliensis]
gi|308523562|gb|ADO33612.1| hypothetical chloroplast RF1
[Hevea brasiliensis]
Length = 1899
Score = 189 bits (479), Expect(3) = 2e-68
Identities = 105/139 (75%), Positives = 110/139 (79%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
YQEFE KTD K+FS E AY LNLINEF GKSRSSLNFKEL LFPDHKEEK+ LENRI
Sbjct: 548 YQEFESKTDGFNRKAFSIENAYFLNLINEFVGKSRSSLNFKELPLFPDHKEEKMYLENRI 607
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
KI KFLF TVIAN KNKTI NS GIKEISKQVPRWSYKLIDDL NM+E
Sbjct: 608 KILKFLFHTVIANPKNKTIIKNSTGIKEISKQVPRWSYKLIDDL---EQQEGENEENMSE 664
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
D+EIRSRKAKRVVIFTDN+
Sbjct: 665 DYEIRSRKAKRVVIFTDNK 683
Score = 78.6 bits (192), Expect(3) = 2e-68
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
SDQI++VTLI YSQQSDFRRDIIKGS+RAQRRKI I ELFQANVH
Sbjct: 698 SDQIEEVTLIHYSQQSDFRRDIIKGSVRAQRRKIAIWELFQANVH 742
Score = 39.7 bits (91), Expect(3) = 2e-68
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
KTSIKNSIEM+ INK HL LLI N +K
Sbjct: 524 KTSIKNSIEMLWINKIHLILLITNYQEFESK 554
>ref|YP_005090236.1| ycf1 gene product (chloroplast) [Ricinus communis]
gi|339516224|gb|AEJ82614.1| hypothetical chloroplast RF1
[Ricinus communis]
Length = 1805
Score = 186 bits (473), Expect(2) = 3e-62
Identities = 101/136 (74%), Positives = 111/136 (81%)
Frame = -2
Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
Y EFE KTD KSFSTEIAY LNLINEFAGKS SS NFK L LFPD+KEEK+DLE ++I
Sbjct: 552 YIEFEPKTDRKSFSTEIAYFLNLINEFAGKSTSSFNFKGLPLFPDYKEEKMDLE-LLQIL 610
Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
KF+FD V+ANSKNKTI+NNS+GIKEI+KQVP WSYKLIDDL NMAED+E
Sbjct: 611 KFVFDPVLANSKNKTIKNNSLGIKEINKQVPHWSYKLIDDL---EQQEGENEENMAEDYE 667
Query: 227 IRSRKAKRVVIFTDNQ 180
IRSRKAKRVVIFTDNQ
Sbjct: 668 IRSRKAKRVVIFTDNQ 683
Score = 79.0 bits (193), Expect(2) = 3e-62
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
DQID+VTLIRYSQQSDFRRDIIKGS RAQRRKI I ELFQAN H
Sbjct: 699 DQIDEVTLIRYSQQSDFRRDIIKGSTRAQRRKIAIFELFQANAH 742
>gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua]
Length = 1882
Score = 150 bits (380), Expect(3) = 7e-52
Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y+EFE K D+ KS ST+I LNLI EFAG+S S+LN K LSLFP+ + ++D +++
Sbjct: 558 YREFEQKIDMFDSKSLSTKIDNFLNLIGEFAGESTSNLNLKGLSLFPEQDQGRVDSKDQA 617
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
K FKFLFD +I + K++TIR SIGIKEI K+VPRWSYKLIDDL +++E
Sbjct: 618 KFFKFLFDAIITDPKDQTIRKKSIGIKEIRKKVPRWSYKLIDDL---EQQEGENEEDVSE 674
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
DHEIRSRKAKRVVIFTDN+
Sbjct: 675 DHEIRSRKAKRVVIFTDNE 693
Score = 73.6 bits (179), Expect(3) = 7e-52
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
D D+V LIRYSQQSDFRRD+IKGSMRAQRRK I ELFQANVH
Sbjct: 711 DPADEVALIRYSQQSDFRRDMIKGSMRAQRRKTAIFELFQANVH 754
Score = 27.3 bits (59), Expect(3) = 7e-52
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
+TSI NSIE + INK H LL+ + K
Sbjct: 534 ETSIVNSIETIWINKIHGILLVTDYREFEQK 564
>gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina]
Length = 1909
Score = 149 bits (375), Expect(3) = 1e-50
Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y+EFE K D KS STEI + LI+EFA +S SS N K LSLFP+ ++ ++D E+R
Sbjct: 554 YREFEQKIDKLDKKSLSTEIGHFFTLISEFAVESPSSFNLKGLSLFPEQEQGRIDSEDRA 613
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
K F+FLFD VI + ++TIR SIGI E+SK+VPRWSYKLIDDL +A
Sbjct: 614 KFFEFLFDAVITDLNDQTIRKKSIGINEMSKKVPRWSYKLIDDLEQQEGGENEEEVAVAL 673
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
DHEIRSRKAKRVVIFTDNQ
Sbjct: 674 DHEIRSRKAKRVVIFTDNQ 692
Score = 72.8 bits (177), Expect(3) = 1e-50
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+Q D+V LIRYSQQSDFRRDIIKGSMRAQRRK I ELFQAN H
Sbjct: 705 EQADEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFQANAH 748
Score = 26.2 bits (56), Expect(3) = 1e-50
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLL 598
+TSI+NSIE V +NK H LL
Sbjct: 531 ETSIENSIETVWLNKIHGILL 551
>ref|YP_005296157.1| ycf1 gene product (chloroplast) [Pentactina rupicola]
gi|371532678|gb|AEX31788.1| hypothetical chloroplast RF1
(chloroplast) [Pentactina rupicola]
Length = 1879
Score = 145 bits (365), Expect(3) = 7e-48
Identities = 84/141 (59%), Positives = 101/141 (71%), Gaps = 5/141 (3%)
Frame = -2
Query: 587 YQEFELK---TDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y EFE K D KS +TEI+ +LNLINE A K SSLN K L L P+H++ ++D E+RI
Sbjct: 550 YLEFEQKKNPVDRKSLATEISSLLNLINELAVKWASSLNSKGLFLVPEHEQVRIDSEDRI 609
Query: 416 KIFKFLFDTVIANSKNKTIRN--NSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243
KIFKFLFD VI +KTI+N SIGI+EI+K+VPRWSYKLI+DL ++
Sbjct: 610 KIFKFLFDAVITVPNDKTIKNQSKSIGIQEINKKVPRWSYKLINDL---EQQEGETEESV 666
Query: 242 AEDHEIRSRKAKRVVIFTDNQ 180
EDHEIRSRKAKRVVIFTDNQ
Sbjct: 667 VEDHEIRSRKAKRVVIFTDNQ 687
Score = 66.6 bits (161), Expect(3) = 7e-48
Identities = 33/44 (75%), Positives = 37/44 (84%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANV 5
+DQ D+V LIRYSQQSDFRRDIIKGS+RAQRRK + FQANV
Sbjct: 702 TDQTDEVALIRYSQQSDFRRDIIKGSVRAQRRKTVTWKFFQANV 745
Score = 26.6 bits (57), Expect(3) = 7e-48
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 660 KTSIKNSIEMVR--INKNHLFLLIINLSRIRTK 568
+ SIKN IE+ R INK H LLIIN K
Sbjct: 524 EASIKNYIEIERVWINKIHGILLIINYLEFEQK 556
>gb|ADD30912.1| putative RF1 protein [Ximenia americana]
Length = 1895
Score = 132 bits (333), Expect(3) = 3e-46
Identities = 76/141 (53%), Positives = 96/141 (68%), Gaps = 5/141 (3%)
Frame = -2
Query: 587 YQEFELKTD----VKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENR 420
Y+EF+ K D K+ STEI + + LI+EFA +S S N K LSLFP+ + ++D E R
Sbjct: 554 YREFKQKIDNTFDKKALSTEIGHFVTLISEFAEESTPSFNLKRLSLFPE--QGRIDSEGR 611
Query: 419 IKIFKFLFDTVIANSKN-KTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243
K +KFLFD ++ + N KTIR SIG+K+ISK+VPRWSYKLID+L +
Sbjct: 612 KKNWKFLFDAILTDPNNQKTIRKKSIGVKKISKKVPRWSYKLIDEL--EQQEGENEEDVV 669
Query: 242 AEDHEIRSRKAKRVVIFTDNQ 180
EDHEIRSRKAKRVVIFTDNQ
Sbjct: 670 VEDHEIRSRKAKRVVIFTDNQ 690
Score = 74.7 bits (182), Expect(3) = 3e-46
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
DQ D+V+LIRYSQQSDFRRDIIKGSMRAQRRK I ELF+ANVH
Sbjct: 706 DQTDEVSLIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFRANVH 749
Score = 25.4 bits (54), Expect(3) = 3e-46
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNH 610
+TSI+NSIE V INK H
Sbjct: 531 ETSIENSIETVWINKIH 547
>ref|YP_004072518.1| hypothetical protein ColaC_p079 [Corynocarpus laevigata]
gi|309252946|gb|ADO60366.1| hypothetical protein
[Corynocarpus laevigata]
Length = 1852
Score = 139 bits (351), Expect(3) = 6e-46
Identities = 81/140 (57%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
Frame = -2
Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDL--EN 423
YQ+ E K D S S EI+Y LNLI+ F GKS ++ NFK LSLFP HK+ ++ E+
Sbjct: 549 YQKMEHKMDPLERNSLSKEISYFLNLISGFTGKS-TNFNFKGLSLFPKHKQVIIESNSED 607
Query: 422 RIKIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243
RIKI KFLFD VI + +KTIR SIGIKEISK+VPRWSYKLI+DL ++
Sbjct: 608 RIKILKFLFDAVITDYNDKTIRKKSIGIKEISKKVPRWSYKLINDL---EQEHGENAESL 664
Query: 242 AEDHEIRSRKAKRVVIFTDN 183
EDHEIRSRKAKRV+I+TDN
Sbjct: 665 TEDHEIRSRKAKRVIIYTDN 684
Score = 70.9 bits (172), Expect(3) = 6e-46
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
DQ D+V LIRYSQ SDFRRDIIKGSMRAQRRK I +LFQANVH
Sbjct: 701 DQPDEVALIRYSQLSDFRRDIIKGSMRAQRRKTVIWKLFQANVH 744
Score = 21.2 bits (43), Expect(3) = 6e-46
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
KTS KN E INK H + N ++ K
Sbjct: 525 KTSRKNDRENTFINKIHGIFVNTNYQKMEHK 555
>ref|YP_007025526.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria virginiana]
gi|357198883|gb|AET62798.1| hypothetical chloroplast RF1
(chloroplast) [Fragaria virginiana]
Length = 1916
Score = 139 bits (349), Expect(3) = 1e-45
Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Frame = -2
Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411
EFE K D K++ ++ Y+LNLINEFA KS SSLNFK L P+H++ ++D E+RIKI
Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620
Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231
FKFLFD I KTI+ SI +KEI K+VPRWSYKLI+DL E+H
Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677
Query: 230 EIRSRKAKRVVIFTDNQ 180
+IRSRKAKRVVIFTDNQ
Sbjct: 678 QIRSRKAKRVVIFTDNQ 694
Score = 67.0 bits (162), Expect(3) = 1e-45
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI + F+A+VH
Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753
Score = 25.0 bits (53), Expect(3) = 1e-45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589
+S KN +E INK H LLIIN
Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558
>ref|YP_007025441.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria chiloensis]
gi|357198797|gb|AET62713.1| hypothetical chloroplast RF1
(chloroplast) [Fragaria chiloensis]
Length = 1916
Score = 139 bits (349), Expect(3) = 1e-45
Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Frame = -2
Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411
EFE K D K++ ++ Y+LNLINEFA KS SSLNFK L P+H++ ++D E+RIKI
Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620
Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231
FKFLFD I KTI+ SI +KEI K+VPRWSYKLI+DL E+H
Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677
Query: 230 EIRSRKAKRVVIFTDNQ 180
+IRSRKAKRVVIFTDNQ
Sbjct: 678 QIRSRKAKRVVIFTDNQ 694
Score = 67.0 bits (162), Expect(3) = 1e-45
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI + F+A+VH
Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753
Score = 25.0 bits (53), Expect(3) = 1e-45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589
+S KN +E INK H LLIIN
Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558
>ref|YP_004286160.1| hypothetical chloroplast RF1 [Fragaria vesca subsp. vesca]
gi|324022835|gb|ADY15409.1| hypothetical chloroplast RF1
[Fragaria vesca subsp. vesca]
Length = 1916
Score = 139 bits (349), Expect(3) = 1e-45
Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Frame = -2
Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411
EFE K D K++ ++ Y+LNLINEFA KS SSLNFK L P+H++ ++D E+RIKI
Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620
Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231
FKFLFD I KTI+ SI +KEI K+VPRWSYKLI+DL E+H
Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677
Query: 230 EIRSRKAKRVVIFTDNQ 180
+IRSRKAKRVVIFTDNQ
Sbjct: 678 QIRSRKAKRVVIFTDNQ 694
Score = 67.0 bits (162), Expect(3) = 1e-45
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI + F+A+VH
Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753
Score = 25.0 bits (53), Expect(3) = 1e-45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589
+S KN +E INK H LLIIN
Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558
>ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense]
gi|479279261|gb|AGJ72115.1| hypothetical chloroplast RF1
(chloroplast) [Tetracentron sinense]
Length = 1895
Score = 130 bits (327), Expect(3) = 1e-45
Identities = 76/139 (54%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y+EFE K D K ST+I + L INEF G+S S N KELSL + + ++ EN+
Sbjct: 545 YREFEHKIYTFDEKYLSTDIGHFLTSINEFTGESTPSFNLKELSLSAE--QGRIYSENKE 602
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
K KFLFD VI + ++ IR SIGIKEISK+VPRWSYKLI+DL +AE
Sbjct: 603 KFLKFLFDAVITDPNDQRIRKKSIGIKEISKKVPRWSYKLINDL---EQQEGGIEEEVAE 659
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
DHEIRSRKAKRVVIFTDN+
Sbjct: 660 DHEIRSRKAKRVVIFTDNE 678
Score = 71.6 bits (174), Expect(3) = 1e-45
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+Q +++ LIRYSQQ+DFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 693 NQANEMALIRYSQQADFRRDIIKGSMRAQRRKIVIWELFQANVH 736
Score = 28.9 bits (63), Expect(3) = 1e-45
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLL 598
KTSI++SIEMV INK H LL
Sbjct: 522 KTSIEDSIEMVWINKIHDILL 542
>ref|YP_008082790.1| hypothetical chloroplast RF19 [Prinsepia utilis]
gi|501418879|gb|AGL94756.1| hypothetical chloroplast
RF19 [Prinsepia utilis]
Length = 1836
Score = 130 bits (327), Expect(3) = 4e-45
Identities = 74/139 (53%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y EFE K D+KS STEI Y+LNLIN+ A KS SS NFK+L L P+H + +D E++I
Sbjct: 508 YLEFEHKKNTFDIKSLSTEIGYLLNLINKLAVKSTSSFNFKKLILVPEHDQVIIDYEDQI 567
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
KI K LF V + +K I+ IGIKEI+K++P SYKLI+DL ++ E
Sbjct: 568 KILKLLFHKVRTFTNDKLIKKKIIGIKEINKKIPAQSYKLINDL---EQQEGETEESVVE 624
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
+H+IRSRKAKRVVIFTDNQ
Sbjct: 625 EHQIRSRKAKRVVIFTDNQ 643
Score = 70.1 bits (170), Expect(3) = 4e-45
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+DQ D+V LIRYSQQ DFRRDIIKGSMRAQRRK ++FQANVH
Sbjct: 658 TDQTDEVALIRYSQQPDFRRDIIKGSMRAQRRKTVTWKIFQANVH 702
Score = 28.5 bits (62), Expect(3) = 4e-45
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
+ SIKN IE INK H+ LLIIN
Sbjct: 484 EASIKNYIENGCINKIHVILLIIN 507
>gb|AGL13489.1| hypothetical chloroplast RF19 (chloroplast) [Liquidambar formosana]
Length = 1878
Score = 127 bits (319), Expect(3) = 7e-45
Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y+EFE K D+ KS T+ G+S S+ N K LSLFP+ ++ ++D +++
Sbjct: 563 YREFEQKIDMFDSKSLLTK------------GESTSNFNLKVLSLFPEQEQGRVDSKDQA 610
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
K FKFLFD +I + K++TIR SIGIKEI K+VPRWSYKLIDDL ++AE
Sbjct: 611 KFFKFLFDAIITDPKDQTIRKKSIGIKEIRKKVPRWSYKLIDDL---EQQEGENEEDVAE 667
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
DHEIRSRKAKRVVIFTDN+
Sbjct: 668 DHEIRSRKAKRVVIFTDNE 686
Score = 73.6 bits (179), Expect(3) = 7e-45
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
D D+V LIRYSQQSDFRRD+IKGSMRAQRRK I ELFQANVH
Sbjct: 704 DPADEVALIRYSQQSDFRRDMIKGSMRAQRRKTAIFELFQANVH 747
Score = 27.3 bits (59), Expect(3) = 7e-45
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568
+TSI NSIE + INK H LL+ + K
Sbjct: 539 ETSIVNSIETIWINKIHGMLLVTDYREFEQK 569
>ref|YP_004021722.1| hypothetical chloroplast RF1 [Prunus persica]
gi|309321491|gb|ADO65032.1| hypothetical chloroplast RF1
[Prunus persica]
Length = 1871
Score = 139 bits (350), Expect(2) = 1e-44
Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Frame = -2
Query: 587 YQEFELKT------DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLE 426
Y EFE KT D KS TEI Y+LNLINE A KS SSLNF+ L L P+H++ ++ E
Sbjct: 547 YLEFEQKTNPFDINDRKSLVTEIGYLLNLINELAVKSTSSLNFQRLFLVPEHEQVRIHSE 606
Query: 425 NRIKIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXN 246
++ KI FLFD V +KTI+ SI IKEI+K+VPRWSYKLI+DL +
Sbjct: 607 DQFKILNFLFDAVRTVPNDKTIKKKSIEIKEINKRVPRWSYKLINDL---EQQEGETEES 663
Query: 245 MAEDHEIRSRKAKRVVIFTDN 183
+ EDHEIRSRKAKRVVIFTDN
Sbjct: 664 VVEDHEIRSRKAKRVVIFTDN 684
Score = 67.4 bits (163), Expect(2) = 1e-44
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+DQ ++ LIRYSQQ DFRRDIIKGSMRAQRRK +LFQANVH
Sbjct: 700 TDQTAEIALIRYSQQPDFRRDIIKGSMRAQRRKTVTWKLFQANVH 744
>ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [Trochodendron
aralioides] gi|290489080|gb|ADD30924.1| putative RF1
protein [Trochodendron aralioides]
gi|479279354|gb|AGJ72207.1| hypothetical chloroplast RF1
(chloroplast) [Trochodendron aralioides]
Length = 1896
Score = 129 bits (325), Expect(3) = 2e-44
Identities = 75/139 (53%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
Frame = -2
Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417
Y+EFE K D KS ST+I + L NEF G+S S N KELSL + + +++ EN+
Sbjct: 547 YREFEQKIYGFDGKSLSTDIGHFLTSTNEFTGESTPSFNLKELSLSAE--QGRIESENQE 604
Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237
K KFLFD V + ++ IR SIGIKEISK+VPRWSYKLI+DL +AE
Sbjct: 605 KFLKFLFDAVRTDPNDQRIRKKSIGIKEISKKVPRWSYKLINDL---EQQEGGSEEEVAE 661
Query: 236 DHEIRSRKAKRVVIFTDNQ 180
DHEIRSRKAKRVVIFTDN+
Sbjct: 662 DHEIRSRKAKRVVIFTDNE 680
Score = 71.2 bits (173), Expect(3) = 2e-44
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -3
Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
+Q ++V LIRYSQQ+DFRRDIIKGSMR QRRKI I ELFQANVH
Sbjct: 695 NQANEVALIRYSQQADFRRDIIKGSMRTQRRKIVIWELFQANVH 738
Score = 25.8 bits (55), Expect(3) = 2e-44
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLL 598
+TSI++SIE+V INK H LL
Sbjct: 524 ETSIEDSIEIVWINKIHDILL 544
>dbj|BAO01635.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp.
caucasica]
Length = 1893
Score = 127 bits (320), Expect(3) = 2e-44
Identities = 71/136 (52%), Positives = 88/136 (64%)
Frame = -2
Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
Y+EFE D KS ST+I Y LNLIN+F +S S+LN K LSLFP+ + D E++ K
Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610
Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662
Query: 227 IRSRKAKRVVIFTDNQ 180
IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678
Score = 75.9 bits (185), Expect(3) = 2e-44
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739
Score = 23.1 bits (48), Expect(3) = 2e-44
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
+TS +NSIE RINK + L I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550
>dbj|BAO01551.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp.
caucasica]
Length = 1893
Score = 127 bits (320), Expect(3) = 2e-44
Identities = 71/136 (52%), Positives = 88/136 (64%)
Frame = -2
Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
Y+EFE D KS ST+I Y LNLIN+F +S S+LN K LSLFP+ + D E++ K
Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610
Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662
Query: 227 IRSRKAKRVVIFTDNQ 180
IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678
Score = 75.9 bits (185), Expect(3) = 2e-44
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739
Score = 23.1 bits (48), Expect(3) = 2e-44
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
+TS +NSIE RINK + L I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550
>ref|YP_567136.1| hypothetical chloroplast RF1 [Vitis vinifera]
gi|118577986|sp|Q0ZIW0.1|YCF1_VITVI RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|91701709|gb|ABE47593.1| hypothetical chloroplast RF1
[Vitis vinifera]
Length = 1893
Score = 127 bits (320), Expect(3) = 2e-44
Identities = 71/136 (52%), Positives = 88/136 (64%)
Frame = -2
Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
Y+EFE D KS ST+I Y LNLIN+F +S S+LN K LSLFP+ + D E++ K
Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610
Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662
Query: 227 IRSRKAKRVVIFTDNQ 180
IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678
Score = 75.9 bits (185), Expect(3) = 2e-44
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739
Score = 23.1 bits (48), Expect(3) = 2e-44
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
+TS +NSIE RINK + L I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550
>dbj|BAO01719.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp.
caucasica]
Length = 1893
Score = 126 bits (317), Expect(3) = 4e-44
Identities = 70/136 (51%), Positives = 88/136 (64%)
Frame = -2
Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408
Y+EFE D KS ST++ Y LNLIN+F +S S+LN K LSLFP+ + D E++ K
Sbjct: 551 YREFEHTFDRKSLSTKMGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610
Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228
F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E
Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662
Query: 227 IRSRKAKRVVIFTDNQ 180
IRSRK+K VVIFTDNQ
Sbjct: 663 IRSRKSKHVVIFTDNQ 678
Score = 75.9 bits (185), Expect(3) = 4e-44
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = -3
Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2
S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH
Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739
Score = 23.1 bits (48), Expect(3) = 4e-44
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589
+TS +NSIE RINK + L I+
Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550