BLASTX nr result
ID: Jatropha_contig00018428
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Jatropha_contig00018428 (687 letters) Database: NCBI-nr (updated 2014/02/11) 35,149,712 sequences; 12,374,887,350 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002720170.1| ycf1 [Jatropha curcas] gi|224979621|gb|ACN72... 231 3e-79 ref|YP_004327719.1| hypothetical chloroplast RF1 [Hevea brasilie... 189 2e-68 ref|YP_005090236.1| ycf1 gene product (chloroplast) [Ricinus com... 186 3e-62 gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua] 150 7e-52 gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina] 149 1e-50 ref|YP_005296157.1| ycf1 gene product (chloroplast) [Pentactina ... 145 7e-48 gb|ADD30912.1| putative RF1 protein [Ximenia americana] 132 3e-46 ref|YP_004072518.1| hypothetical protein ColaC_p079 [Corynocarpu... 139 6e-46 ref|YP_007025526.1| hypothetical chloroplast RF1 (chloroplast) [... 139 1e-45 ref|YP_007025441.1| hypothetical chloroplast RF1 (chloroplast) [... 139 1e-45 ref|YP_004286160.1| hypothetical chloroplast RF1 [Fragaria vesca... 139 1e-45 ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [... 130 1e-45 ref|YP_008082790.1| hypothetical chloroplast RF19 [Prinsepia uti... 130 4e-45 gb|AGL13489.1| hypothetical chloroplast RF19 (chloroplast) [Liqu... 127 7e-45 ref|YP_004021722.1| hypothetical chloroplast RF1 [Prunus persica... 139 1e-44 ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [... 129 2e-44 dbj|BAO01635.1| hypothetical chloroplast RF1 (chloroplast) [Viti... 127 2e-44 dbj|BAO01551.1| hypothetical chloroplast RF1 (chloroplast) [Viti... 127 2e-44 ref|YP_567136.1| hypothetical chloroplast RF1 [Vitis vinifera] g... 127 2e-44 dbj|BAO01719.1| hypothetical chloroplast RF1 (chloroplast) [Viti... 126 4e-44 >ref|YP_002720170.1| ycf1 [Jatropha curcas] gi|224979621|gb|ACN72748.1| ycf1 [Jatropha curcas] Length = 1907 Score = 231 bits (590), Expect(2) = 3e-79 Identities = 120/136 (88%), Positives = 122/136 (89%) Frame = -2 Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408 YQ+FE KTDVKSFSTEIAY LNLINEFAGKSRSSLNFKELSLFPDHKEEK+DLENRIKIF Sbjct: 548 YQKFEPKTDVKSFSTEIAYFLNLINEFAGKSRSSLNFKELSLFPDHKEEKMDLENRIKIF 607 Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDL NMAEDHE Sbjct: 608 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLEQQEGENEENEENMAEDHE 667 Query: 227 IRSRKAKRVVIFTDNQ 180 IRSRKAKRVVIFTDNQ Sbjct: 668 IRSRKAKRVVIFTDNQ 683 Score = 90.5 bits (223), Expect(2) = 3e-79 Identities = 45/45 (100%), Positives = 45/45 (100%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH Sbjct: 698 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 742 >ref|YP_004327719.1| hypothetical chloroplast RF1 [Hevea brasiliensis] gi|308523562|gb|ADO33612.1| hypothetical chloroplast RF1 [Hevea brasiliensis] Length = 1899 Score = 189 bits (479), Expect(3) = 2e-68 Identities = 105/139 (75%), Positives = 110/139 (79%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 YQEFE KTD K+FS E AY LNLINEF GKSRSSLNFKEL LFPDHKEEK+ LENRI Sbjct: 548 YQEFESKTDGFNRKAFSIENAYFLNLINEFVGKSRSSLNFKELPLFPDHKEEKMYLENRI 607 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 KI KFLF TVIAN KNKTI NS GIKEISKQVPRWSYKLIDDL NM+E Sbjct: 608 KILKFLFHTVIANPKNKTIIKNSTGIKEISKQVPRWSYKLIDDL---EQQEGENEENMSE 664 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 D+EIRSRKAKRVVIFTDN+ Sbjct: 665 DYEIRSRKAKRVVIFTDNK 683 Score = 78.6 bits (192), Expect(3) = 2e-68 Identities = 39/45 (86%), Positives = 42/45 (93%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 SDQI++VTLI YSQQSDFRRDIIKGS+RAQRRKI I ELFQANVH Sbjct: 698 SDQIEEVTLIHYSQQSDFRRDIIKGSVRAQRRKIAIWELFQANVH 742 Score = 39.7 bits (91), Expect(3) = 2e-68 Identities = 20/31 (64%), Positives = 22/31 (70%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568 KTSIKNSIEM+ INK HL LLI N +K Sbjct: 524 KTSIKNSIEMLWINKIHLILLITNYQEFESK 554 >ref|YP_005090236.1| ycf1 gene product (chloroplast) [Ricinus communis] gi|339516224|gb|AEJ82614.1| hypothetical chloroplast RF1 [Ricinus communis] Length = 1805 Score = 186 bits (473), Expect(2) = 3e-62 Identities = 101/136 (74%), Positives = 111/136 (81%) Frame = -2 Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408 Y EFE KTD KSFSTEIAY LNLINEFAGKS SS NFK L LFPD+KEEK+DLE ++I Sbjct: 552 YIEFEPKTDRKSFSTEIAYFLNLINEFAGKSTSSFNFKGLPLFPDYKEEKMDLE-LLQIL 610 Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228 KF+FD V+ANSKNKTI+NNS+GIKEI+KQVP WSYKLIDDL NMAED+E Sbjct: 611 KFVFDPVLANSKNKTIKNNSLGIKEINKQVPHWSYKLIDDL---EQQEGENEENMAEDYE 667 Query: 227 IRSRKAKRVVIFTDNQ 180 IRSRKAKRVVIFTDNQ Sbjct: 668 IRSRKAKRVVIFTDNQ 683 Score = 79.0 bits (193), Expect(2) = 3e-62 Identities = 39/44 (88%), Positives = 40/44 (90%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 DQID+VTLIRYSQQSDFRRDIIKGS RAQRRKI I ELFQAN H Sbjct: 699 DQIDEVTLIRYSQQSDFRRDIIKGSTRAQRRKIAIFELFQANAH 742 >gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua] Length = 1882 Score = 150 bits (380), Expect(3) = 7e-52 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y+EFE K D+ KS ST+I LNLI EFAG+S S+LN K LSLFP+ + ++D +++ Sbjct: 558 YREFEQKIDMFDSKSLSTKIDNFLNLIGEFAGESTSNLNLKGLSLFPEQDQGRVDSKDQA 617 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 K FKFLFD +I + K++TIR SIGIKEI K+VPRWSYKLIDDL +++E Sbjct: 618 KFFKFLFDAIITDPKDQTIRKKSIGIKEIRKKVPRWSYKLIDDL---EQQEGENEEDVSE 674 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 DHEIRSRKAKRVVIFTDN+ Sbjct: 675 DHEIRSRKAKRVVIFTDNE 693 Score = 73.6 bits (179), Expect(3) = 7e-52 Identities = 36/44 (81%), Positives = 38/44 (86%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 D D+V LIRYSQQSDFRRD+IKGSMRAQRRK I ELFQANVH Sbjct: 711 DPADEVALIRYSQQSDFRRDMIKGSMRAQRRKTAIFELFQANVH 754 Score = 27.3 bits (59), Expect(3) = 7e-52 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568 +TSI NSIE + INK H LL+ + K Sbjct: 534 ETSIVNSIETIWINKIHGILLVTDYREFEQK 564 >gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina] Length = 1909 Score = 149 bits (375), Expect(3) = 1e-50 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y+EFE K D KS STEI + LI+EFA +S SS N K LSLFP+ ++ ++D E+R Sbjct: 554 YREFEQKIDKLDKKSLSTEIGHFFTLISEFAVESPSSFNLKGLSLFPEQEQGRIDSEDRA 613 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 K F+FLFD VI + ++TIR SIGI E+SK+VPRWSYKLIDDL +A Sbjct: 614 KFFEFLFDAVITDLNDQTIRKKSIGINEMSKKVPRWSYKLIDDLEQQEGGENEEEVAVAL 673 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 DHEIRSRKAKRVVIFTDNQ Sbjct: 674 DHEIRSRKAKRVVIFTDNQ 692 Score = 72.8 bits (177), Expect(3) = 1e-50 Identities = 36/44 (81%), Positives = 38/44 (86%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +Q D+V LIRYSQQSDFRRDIIKGSMRAQRRK I ELFQAN H Sbjct: 705 EQADEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFQANAH 748 Score = 26.2 bits (56), Expect(3) = 1e-50 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLL 598 +TSI+NSIE V +NK H LL Sbjct: 531 ETSIENSIETVWLNKIHGILL 551 >ref|YP_005296157.1| ycf1 gene product (chloroplast) [Pentactina rupicola] gi|371532678|gb|AEX31788.1| hypothetical chloroplast RF1 (chloroplast) [Pentactina rupicola] Length = 1879 Score = 145 bits (365), Expect(3) = 7e-48 Identities = 84/141 (59%), Positives = 101/141 (71%), Gaps = 5/141 (3%) Frame = -2 Query: 587 YQEFELK---TDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y EFE K D KS +TEI+ +LNLINE A K SSLN K L L P+H++ ++D E+RI Sbjct: 550 YLEFEQKKNPVDRKSLATEISSLLNLINELAVKWASSLNSKGLFLVPEHEQVRIDSEDRI 609 Query: 416 KIFKFLFDTVIANSKNKTIRN--NSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243 KIFKFLFD VI +KTI+N SIGI+EI+K+VPRWSYKLI+DL ++ Sbjct: 610 KIFKFLFDAVITVPNDKTIKNQSKSIGIQEINKKVPRWSYKLINDL---EQQEGETEESV 666 Query: 242 AEDHEIRSRKAKRVVIFTDNQ 180 EDHEIRSRKAKRVVIFTDNQ Sbjct: 667 VEDHEIRSRKAKRVVIFTDNQ 687 Score = 66.6 bits (161), Expect(3) = 7e-48 Identities = 33/44 (75%), Positives = 37/44 (84%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANV 5 +DQ D+V LIRYSQQSDFRRDIIKGS+RAQRRK + FQANV Sbjct: 702 TDQTDEVALIRYSQQSDFRRDIIKGSVRAQRRKTVTWKFFQANV 745 Score = 26.6 bits (57), Expect(3) = 7e-48 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = -1 Query: 660 KTSIKNSIEMVR--INKNHLFLLIINLSRIRTK 568 + SIKN IE+ R INK H LLIIN K Sbjct: 524 EASIKNYIEIERVWINKIHGILLIINYLEFEQK 556 >gb|ADD30912.1| putative RF1 protein [Ximenia americana] Length = 1895 Score = 132 bits (333), Expect(3) = 3e-46 Identities = 76/141 (53%), Positives = 96/141 (68%), Gaps = 5/141 (3%) Frame = -2 Query: 587 YQEFELKTD----VKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENR 420 Y+EF+ K D K+ STEI + + LI+EFA +S S N K LSLFP+ + ++D E R Sbjct: 554 YREFKQKIDNTFDKKALSTEIGHFVTLISEFAEESTPSFNLKRLSLFPE--QGRIDSEGR 611 Query: 419 IKIFKFLFDTVIANSKN-KTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243 K +KFLFD ++ + N KTIR SIG+K+ISK+VPRWSYKLID+L + Sbjct: 612 KKNWKFLFDAILTDPNNQKTIRKKSIGVKKISKKVPRWSYKLIDEL--EQQEGENEEDVV 669 Query: 242 AEDHEIRSRKAKRVVIFTDNQ 180 EDHEIRSRKAKRVVIFTDNQ Sbjct: 670 VEDHEIRSRKAKRVVIFTDNQ 690 Score = 74.7 bits (182), Expect(3) = 3e-46 Identities = 37/44 (84%), Positives = 40/44 (90%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 DQ D+V+LIRYSQQSDFRRDIIKGSMRAQRRK I ELF+ANVH Sbjct: 706 DQTDEVSLIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFRANVH 749 Score = 25.4 bits (54), Expect(3) = 3e-46 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNH 610 +TSI+NSIE V INK H Sbjct: 531 ETSIENSIETVWINKIH 547 >ref|YP_004072518.1| hypothetical protein ColaC_p079 [Corynocarpus laevigata] gi|309252946|gb|ADO60366.1| hypothetical protein [Corynocarpus laevigata] Length = 1852 Score = 139 bits (351), Expect(3) = 6e-46 Identities = 81/140 (57%), Positives = 98/140 (70%), Gaps = 5/140 (3%) Frame = -2 Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDL--EN 423 YQ+ E K D S S EI+Y LNLI+ F GKS ++ NFK LSLFP HK+ ++ E+ Sbjct: 549 YQKMEHKMDPLERNSLSKEISYFLNLISGFTGKS-TNFNFKGLSLFPKHKQVIIESNSED 607 Query: 422 RIKIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNM 243 RIKI KFLFD VI + +KTIR SIGIKEISK+VPRWSYKLI+DL ++ Sbjct: 608 RIKILKFLFDAVITDYNDKTIRKKSIGIKEISKKVPRWSYKLINDL---EQEHGENAESL 664 Query: 242 AEDHEIRSRKAKRVVIFTDN 183 EDHEIRSRKAKRV+I+TDN Sbjct: 665 TEDHEIRSRKAKRVIIYTDN 684 Score = 70.9 bits (172), Expect(3) = 6e-46 Identities = 36/44 (81%), Positives = 38/44 (86%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 DQ D+V LIRYSQ SDFRRDIIKGSMRAQRRK I +LFQANVH Sbjct: 701 DQPDEVALIRYSQLSDFRRDIIKGSMRAQRRKTVIWKLFQANVH 744 Score = 21.2 bits (43), Expect(3) = 6e-46 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568 KTS KN E INK H + N ++ K Sbjct: 525 KTSRKNDRENTFINKIHGIFVNTNYQKMEHK 555 >ref|YP_007025526.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria virginiana] gi|357198883|gb|AET62798.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria virginiana] Length = 1916 Score = 139 bits (349), Expect(3) = 1e-45 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%) Frame = -2 Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411 EFE K D K++ ++ Y+LNLINEFA KS SSLNFK L P+H++ ++D E+RIKI Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620 Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231 FKFLFD I KTI+ SI +KEI K+VPRWSYKLI+DL E+H Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677 Query: 230 EIRSRKAKRVVIFTDNQ 180 +IRSRKAKRVVIFTDNQ Sbjct: 678 QIRSRKAKRVVIFTDNQ 694 Score = 67.0 bits (162), Expect(3) = 1e-45 Identities = 32/45 (71%), Positives = 39/45 (86%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI + F+A+VH Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753 Score = 25.0 bits (53), Expect(3) = 1e-45 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589 +S KN +E INK H LLIIN Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558 >ref|YP_007025441.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria chiloensis] gi|357198797|gb|AET62713.1| hypothetical chloroplast RF1 (chloroplast) [Fragaria chiloensis] Length = 1916 Score = 139 bits (349), Expect(3) = 1e-45 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%) Frame = -2 Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411 EFE K D K++ ++ Y+LNLINEFA KS SSLNFK L P+H++ ++D E+RIKI Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620 Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231 FKFLFD I KTI+ SI +KEI K+VPRWSYKLI+DL E+H Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677 Query: 230 EIRSRKAKRVVIFTDNQ 180 +IRSRKAKRVVIFTDNQ Sbjct: 678 QIRSRKAKRVVIFTDNQ 694 Score = 67.0 bits (162), Expect(3) = 1e-45 Identities = 32/45 (71%), Positives = 39/45 (86%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI + F+A+VH Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753 Score = 25.0 bits (53), Expect(3) = 1e-45 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589 +S KN +E INK H LLIIN Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558 >ref|YP_004286160.1| hypothetical chloroplast RF1 [Fragaria vesca subsp. vesca] gi|324022835|gb|ADY15409.1| hypothetical chloroplast RF1 [Fragaria vesca subsp. vesca] Length = 1916 Score = 139 bits (349), Expect(3) = 1e-45 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 3/137 (2%) Frame = -2 Query: 581 EFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKI 411 EFE K D K++ ++ Y+LNLINEFA KS SSLNFK L P+H++ ++D E+RIKI Sbjct: 561 EFEQKLNLFDRKTYVKQMDYLLNLINEFAVKSTSSLNFKRPFLVPEHEQVRIDSEDRIKI 620 Query: 410 FKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDH 231 FKFLFD I KTI+ SI +KEI K+VPRWSYKLI+DL E+H Sbjct: 621 FKFLFDADITLPNEKTIKKKSIALKEIHKKVPRWSYKLINDLEQQEGENPESG---VENH 677 Query: 230 EIRSRKAKRVVIFTDNQ 180 +IRSRKAKRVVIFTDNQ Sbjct: 678 QIRSRKAKRVVIFTDNQ 694 Score = 67.0 bits (162), Expect(3) = 1e-45 Identities = 32/45 (71%), Positives = 39/45 (86%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +DQ D+V LIRYSQQSDFRRD+IKGS+RAQRRKI + F+A+VH Sbjct: 709 TDQPDEVALIRYSQQSDFRRDLIKGSVRAQRRKIVTWKFFEADVH 753 Score = 25.0 bits (53), Expect(3) = 1e-45 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 657 TSIKNSIEMVRINKNHLFLLIIN 589 +S KN +E INK H LLIIN Sbjct: 536 SSRKNYMERFLINKIHSILLIIN 558 >ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense] gi|479279261|gb|AGJ72115.1| hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense] Length = 1895 Score = 130 bits (327), Expect(3) = 1e-45 Identities = 76/139 (54%), Positives = 92/139 (66%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y+EFE K D K ST+I + L INEF G+S S N KELSL + + ++ EN+ Sbjct: 545 YREFEHKIYTFDEKYLSTDIGHFLTSINEFTGESTPSFNLKELSLSAE--QGRIYSENKE 602 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 K KFLFD VI + ++ IR SIGIKEISK+VPRWSYKLI+DL +AE Sbjct: 603 KFLKFLFDAVITDPNDQRIRKKSIGIKEISKKVPRWSYKLINDL---EQQEGGIEEEVAE 659 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 DHEIRSRKAKRVVIFTDN+ Sbjct: 660 DHEIRSRKAKRVVIFTDNE 678 Score = 71.6 bits (174), Expect(3) = 1e-45 Identities = 35/44 (79%), Positives = 40/44 (90%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +Q +++ LIRYSQQ+DFRRDIIKGSMRAQRRKI I ELFQANVH Sbjct: 693 NQANEMALIRYSQQADFRRDIIKGSMRAQRRKIVIWELFQANVH 736 Score = 28.9 bits (63), Expect(3) = 1e-45 Identities = 15/21 (71%), Positives = 17/21 (80%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLL 598 KTSI++SIEMV INK H LL Sbjct: 522 KTSIEDSIEMVWINKIHDILL 542 >ref|YP_008082790.1| hypothetical chloroplast RF19 [Prinsepia utilis] gi|501418879|gb|AGL94756.1| hypothetical chloroplast RF19 [Prinsepia utilis] Length = 1836 Score = 130 bits (327), Expect(3) = 4e-45 Identities = 74/139 (53%), Positives = 94/139 (67%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y EFE K D+KS STEI Y+LNLIN+ A KS SS NFK+L L P+H + +D E++I Sbjct: 508 YLEFEHKKNTFDIKSLSTEIGYLLNLINKLAVKSTSSFNFKKLILVPEHDQVIIDYEDQI 567 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 KI K LF V + +K I+ IGIKEI+K++P SYKLI+DL ++ E Sbjct: 568 KILKLLFHKVRTFTNDKLIKKKIIGIKEINKKIPAQSYKLINDL---EQQEGETEESVVE 624 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 +H+IRSRKAKRVVIFTDNQ Sbjct: 625 EHQIRSRKAKRVVIFTDNQ 643 Score = 70.1 bits (170), Expect(3) = 4e-45 Identities = 34/45 (75%), Positives = 38/45 (84%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +DQ D+V LIRYSQQ DFRRDIIKGSMRAQRRK ++FQANVH Sbjct: 658 TDQTDEVALIRYSQQPDFRRDIIKGSMRAQRRKTVTWKIFQANVH 702 Score = 28.5 bits (62), Expect(3) = 4e-45 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589 + SIKN IE INK H+ LLIIN Sbjct: 484 EASIKNYIENGCINKIHVILLIIN 507 >gb|AGL13489.1| hypothetical chloroplast RF19 (chloroplast) [Liquidambar formosana] Length = 1878 Score = 127 bits (319), Expect(3) = 7e-45 Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKTDV---KSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y+EFE K D+ KS T+ G+S S+ N K LSLFP+ ++ ++D +++ Sbjct: 563 YREFEQKIDMFDSKSLLTK------------GESTSNFNLKVLSLFPEQEQGRVDSKDQA 610 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 K FKFLFD +I + K++TIR SIGIKEI K+VPRWSYKLIDDL ++AE Sbjct: 611 KFFKFLFDAIITDPKDQTIRKKSIGIKEIRKKVPRWSYKLIDDL---EQQEGENEEDVAE 667 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 DHEIRSRKAKRVVIFTDN+ Sbjct: 668 DHEIRSRKAKRVVIFTDNE 686 Score = 73.6 bits (179), Expect(3) = 7e-45 Identities = 36/44 (81%), Positives = 38/44 (86%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 D D+V LIRYSQQSDFRRD+IKGSMRAQRRK I ELFQANVH Sbjct: 704 DPADEVALIRYSQQSDFRRDMIKGSMRAQRRKTAIFELFQANVH 747 Score = 27.3 bits (59), Expect(3) = 7e-45 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIINLSRIRTK 568 +TSI NSIE + INK H LL+ + K Sbjct: 539 ETSIVNSIETIWINKIHGMLLVTDYREFEQK 569 >ref|YP_004021722.1| hypothetical chloroplast RF1 [Prunus persica] gi|309321491|gb|ADO65032.1| hypothetical chloroplast RF1 [Prunus persica] Length = 1871 Score = 139 bits (350), Expect(2) = 1e-44 Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 6/141 (4%) Frame = -2 Query: 587 YQEFELKT------DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLE 426 Y EFE KT D KS TEI Y+LNLINE A KS SSLNF+ L L P+H++ ++ E Sbjct: 547 YLEFEQKTNPFDINDRKSLVTEIGYLLNLINELAVKSTSSLNFQRLFLVPEHEQVRIHSE 606 Query: 425 NRIKIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXN 246 ++ KI FLFD V +KTI+ SI IKEI+K+VPRWSYKLI+DL + Sbjct: 607 DQFKILNFLFDAVRTVPNDKTIKKKSIEIKEINKRVPRWSYKLINDL---EQQEGETEES 663 Query: 245 MAEDHEIRSRKAKRVVIFTDN 183 + EDHEIRSRKAKRVVIFTDN Sbjct: 664 VVEDHEIRSRKAKRVVIFTDN 684 Score = 67.4 bits (163), Expect(2) = 1e-44 Identities = 33/45 (73%), Positives = 37/45 (82%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +DQ ++ LIRYSQQ DFRRDIIKGSMRAQRRK +LFQANVH Sbjct: 700 TDQTAEIALIRYSQQPDFRRDIIKGSMRAQRRKTVTWKLFQANVH 744 >ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [Trochodendron aralioides] gi|290489080|gb|ADD30924.1| putative RF1 protein [Trochodendron aralioides] gi|479279354|gb|AGJ72207.1| hypothetical chloroplast RF1 (chloroplast) [Trochodendron aralioides] Length = 1896 Score = 129 bits (325), Expect(3) = 2e-44 Identities = 75/139 (53%), Positives = 92/139 (66%), Gaps = 3/139 (2%) Frame = -2 Query: 587 YQEFELKT---DVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRI 417 Y+EFE K D KS ST+I + L NEF G+S S N KELSL + + +++ EN+ Sbjct: 547 YREFEQKIYGFDGKSLSTDIGHFLTSTNEFTGESTPSFNLKELSLSAE--QGRIESENQE 604 Query: 416 KIFKFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAE 237 K KFLFD V + ++ IR SIGIKEISK+VPRWSYKLI+DL +AE Sbjct: 605 KFLKFLFDAVRTDPNDQRIRKKSIGIKEISKKVPRWSYKLINDL---EQQEGGSEEEVAE 661 Query: 236 DHEIRSRKAKRVVIFTDNQ 180 DHEIRSRKAKRVVIFTDN+ Sbjct: 662 DHEIRSRKAKRVVIFTDNE 680 Score = 71.2 bits (173), Expect(3) = 2e-44 Identities = 35/44 (79%), Positives = 39/44 (88%) Frame = -3 Query: 133 DQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 +Q ++V LIRYSQQ+DFRRDIIKGSMR QRRKI I ELFQANVH Sbjct: 695 NQANEVALIRYSQQADFRRDIIKGSMRTQRRKIVIWELFQANVH 738 Score = 25.8 bits (55), Expect(3) = 2e-44 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLL 598 +TSI++SIE+V INK H LL Sbjct: 524 ETSIEDSIEIVWINKIHDILL 544 >dbj|BAO01635.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp. caucasica] Length = 1893 Score = 127 bits (320), Expect(3) = 2e-44 Identities = 71/136 (52%), Positives = 88/136 (64%) Frame = -2 Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408 Y+EFE D KS ST+I Y LNLIN+F +S S+LN K LSLFP+ + D E++ K Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610 Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228 F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662 Query: 227 IRSRKAKRVVIFTDNQ 180 IRSRK+K VVIFTDNQ Sbjct: 663 IRSRKSKHVVIFTDNQ 678 Score = 75.9 bits (185), Expect(3) = 2e-44 Identities = 38/45 (84%), Positives = 41/45 (91%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739 Score = 23.1 bits (48), Expect(3) = 2e-44 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589 +TS +NSIE RINK + L I+ Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550 >dbj|BAO01551.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp. caucasica] Length = 1893 Score = 127 bits (320), Expect(3) = 2e-44 Identities = 71/136 (52%), Positives = 88/136 (64%) Frame = -2 Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408 Y+EFE D KS ST+I Y LNLIN+F +S S+LN K LSLFP+ + D E++ K Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610 Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228 F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662 Query: 227 IRSRKAKRVVIFTDNQ 180 IRSRK+K VVIFTDNQ Sbjct: 663 IRSRKSKHVVIFTDNQ 678 Score = 75.9 bits (185), Expect(3) = 2e-44 Identities = 38/45 (84%), Positives = 41/45 (91%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739 Score = 23.1 bits (48), Expect(3) = 2e-44 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589 +TS +NSIE RINK + L I+ Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550 >ref|YP_567136.1| hypothetical chloroplast RF1 [Vitis vinifera] gi|118577986|sp|Q0ZIW0.1|YCF1_VITVI RecName: Full=Putative membrane protein ycf1; Short=RF1 gi|91701709|gb|ABE47593.1| hypothetical chloroplast RF1 [Vitis vinifera] Length = 1893 Score = 127 bits (320), Expect(3) = 2e-44 Identities = 71/136 (52%), Positives = 88/136 (64%) Frame = -2 Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408 Y+EFE D KS ST+I Y LNLIN+F +S S+LN K LSLFP+ + D E++ K Sbjct: 551 YREFEHTFDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610 Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228 F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662 Query: 227 IRSRKAKRVVIFTDNQ 180 IRSRK+K VVIFTDNQ Sbjct: 663 IRSRKSKHVVIFTDNQ 678 Score = 75.9 bits (185), Expect(3) = 2e-44 Identities = 38/45 (84%), Positives = 41/45 (91%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739 Score = 23.1 bits (48), Expect(3) = 2e-44 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589 +TS +NSIE RINK + L I+ Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550 >dbj|BAO01719.1| hypothetical chloroplast RF1 (chloroplast) [Vitis vinifera subsp. caucasica] Length = 1893 Score = 126 bits (317), Expect(3) = 4e-44 Identities = 70/136 (51%), Positives = 88/136 (64%) Frame = -2 Query: 587 YQEFELKTDVKSFSTEIAYILNLINEFAGKSRSSLNFKELSLFPDHKEEKLDLENRIKIF 408 Y+EFE D KS ST++ Y LNLIN+F +S S+LN K LSLFP+ + D E++ K Sbjct: 551 YREFEHTFDRKSLSTKMGYFLNLINQFTIESPSNLNLKRLSLFPEQGKVDSDSEDQAKFL 610 Query: 407 KFLFDTVIANSKNKTIRNNSIGIKEISKQVPRWSYKLIDDLXXXXXXXXXXXXNMAEDHE 228 F FD VI + K++TIR SIGIKEISK+VPRWSYKL+ + + E Sbjct: 611 NFFFDRVITDPKDQTIRKKSIGIKEISKKVPRWSYKLMKN--------EEEGETLVVYQE 662 Query: 227 IRSRKAKRVVIFTDNQ 180 IRSRK+K VVIFTDNQ Sbjct: 663 IRSRKSKHVVIFTDNQ 678 Score = 75.9 bits (185), Expect(3) = 4e-44 Identities = 38/45 (84%), Positives = 41/45 (91%) Frame = -3 Query: 136 SDQIDKVTLIRYSQQSDFRRDIIKGSMRAQRRKIPILELFQANVH 2 S+Q ++V LIRYSQQSDFRRDIIKGSMRAQRRKI I ELFQANVH Sbjct: 695 SEQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVH 739 Score = 23.1 bits (48), Expect(3) = 4e-44 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 660 KTSIKNSIEMVRINKNHLFLLIIN 589 +TS +NSIE RINK + L I+ Sbjct: 527 ETSRENSIEKFRINKIYGILFAID 550