BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00017882
         (532 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]                55   7e-06
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob...    53   7e-06
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas...    55   9e-06

>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
          Length = 528

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
 Frame = +3

Query: 144 YVAPDGDWNLSLLHHFLSDEFVQKVQAIPASTGELGDDLVF*GPSSSGNLTIK----YTF 311
           ++ P+G W+   L + L +E V +V  I   T  +  D+ + G S+SG  TI     Y  
Sbjct: 36  FLNPNGHWDYDKLSYCLPNEVVLQVVQIMPPTVTIAQDMPYWGKSASGQFTIASAYDYLR 95

Query: 312 KLLYPQETN*GNASWMRIWKWQGYQQIGSFLW-LLHHNLFTNQ 437
           +L  P +    +  W   WKWQG Q++ +FL+  LH  L TN+
Sbjct: 96  QLSSPTKAR-PSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTNR 137


>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 874

 Score = 52.8 bits (125), Expect(2) = 7e-06
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
 Frame = +3

Query: 3   TTSMVWALGNGLSIRFLTDP*IDAGVKLIDVAIIAITNDMKDHKAAMYVAPDGDWNLSLL 182
           T  + W++G+G  + F  D  +   V LI+V +          +   Y+ P+GDW+   L
Sbjct: 466 TKHVRWSIGDGALVNFWIDTWVGE-VPLINVVVDMGFMLNLRARVRDYIMPNGDWDKERL 524

Query: 183 HHFLSDEFVQKVQAIPASTGELGDDLVF*GPSSSGNLTIKYTFKLL-----YPQETN*GN 347
              L  E V ++  I   T     D+ +   S SG  TI  T++ L       +E N  N
Sbjct: 525 TSILPIEVVNQILYIIPPTLSASLDMPYWALSPSGYFTISSTYEHLGSLADSTREEN--N 582

Query: 348 ASWMRIWKWQGYQQIGSFLWL-LHHNLFTN 434
             W  +W W+G  ++  FL+  LH  + TN
Sbjct: 583 KMWHLVWDWKGPHRVCLFLFFCLHKRILTN 612



 Score = 22.3 bits (46), Expect(2) = 7e-06
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 505 TCMHTIRDC 531
           TC+H +RDC
Sbjct: 635 TCLHVLRDC 643


>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
           Polynucleotidyl transferase, Ribonuclease H fold-like
           protein [Theobroma cacao]
          Length = 616

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
 Frame = +3

Query: 18  WALGNGLSIRFLTDP*IDAGVKLIDVAIIAITNDMKDHKAAMYVAPDGDWNLSLLHHFLS 197
           W LG+GLSIRF  D  ++    L     + I    ++     ++   G+WN   L   L 
Sbjct: 226 WVLGDGLSIRFWKDIWLEDTPLLEQGHTLNIVTS-ENCCVREFLLDTGEWNHEKLATCLH 284

Query: 198 DEFVQKVQAIPASTGELGDDLVF*GPSSSGNLTIKYTFKLL---YPQETN*GNASWMRIW 368
            + V K+            D  +   S+SG  T+  T+++L   YP      +  W   W
Sbjct: 285 SDLVNKILMFLPPLLSFKPDTPYWASSASGVCTVASTYEVLREDYPNYIGQQSRKWAIAW 344

Query: 369 KWQGYQQIGSFLW-LLHHNLFTN 434
           KW G Q+I +FL   LH  L TN
Sbjct: 345 KWDGPQRIRTFLMQCLHGKLLTN 367