BLASTX nr result
ID: Jatropha_contig00017382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00017382
(549 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002720144.1| rpoA [Jatropha curcas] gi|224979596|gb|ACN72... 335 4e-90
ref|YP_001718469.1| RNA polymerase alpha subunit [Manihot escule... 322 3e-86
ref|YP_004327694.1| RNA polymerase alpha subunit [Hevea brasilie... 319 3e-85
ref|YP_005090210.1| rpoA gene product (chloroplast) [Ricinus com... 318 7e-85
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops... 306 2e-81
gb|ADD31225.1| RNA polymerase alpha subunit protein [Cornus flor... 305 6e-81
gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta] 304 1e-80
ref|YP_007317280.1| RNA polymerase alpha subunit (chloroplast) [... 302 3e-80
ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana u... 302 3e-80
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast... 301 5e-80
gb|ADD31212.1| RNA polymerase alpha subunit protein [Aucuba japo... 301 5e-80
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [... 301 6e-80
gb|AFK81504.1| RNA polymerase alpha subunit [Camellia taliensis] 300 1e-79
ref|YP_008520171.1| DNA-directed RNA polymerase alpha subunit (c... 300 1e-79
ref|YP_005296132.1| rpoA gene product (chloroplast) [Pentactina ... 300 1e-79
ref|XP_004228576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 300 1e-79
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [... 300 1e-79
ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [... 300 2e-79
gb|AGL13462.1| RNA polymerase alpha subunit (chloroplast) [Liqui... 299 2e-79
gb|ADM92734.1| RNA polymerase alpha subunit protein [Davidia inv... 299 2e-79
>ref|YP_002720144.1| rpoA [Jatropha curcas] gi|224979596|gb|ACN72723.1| rpoA [Jatropha
curcas]
Length = 339
Score = 335 bits (859), Expect = 4e-90
Identities = 167/167 (100%), Positives = 167/167 (100%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD
Sbjct: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 167
>ref|YP_001718469.1| RNA polymerase alpha subunit [Manihot esculenta]
gi|157695917|gb|ABV66186.1| RNA polymerase alpha subunit
[Manihot esculenta]
Length = 343
Score = 322 bits (825), Expect = 3e-86
Identities = 158/166 (95%), Positives = 164/166 (98%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREK+TISTRTLQWKC+ESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITISTRTLQWKCIESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHEFSTIAGIQESIHEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQ 6
IILPPFVEIIDNTQHIASLT++IDLCIGLQIERNRGYRIKPTNNFQ
Sbjct: 121 IILPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQ 166
>ref|YP_004327694.1| RNA polymerase alpha subunit [Hevea brasiliensis]
gi|308523538|gb|ADO33588.1| RNA polymerase alpha subunit
[Hevea brasiliensis]
Length = 341
Score = 319 bits (817), Expect = 3e-85
Identities = 158/166 (95%), Positives = 163/166 (98%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHEFSTIAGIQESIHEILMNLK +VL+SNLYGTC+ASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCNASICVEGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQ 6
IILPPFVEIIDNTQHIASLTE+IDLCIGLQIERNRGYRI PTNNFQ
Sbjct: 121 IILPPFVEIIDNTQHIASLTEAIDLCIGLQIERNRGYRINPTNNFQ 166
>ref|YP_005090210.1| rpoA gene product (chloroplast) [Ricinus communis]
gi|339516198|gb|AEJ82588.1| RNA polymerase alpha subunit
[Ricinus communis]
Length = 332
Score = 318 bits (814), Expect = 7e-85
Identities = 156/167 (93%), Positives = 162/167 (97%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
M+REKVTISTRTLQWKCVESRTDNKRL+YGRFILSPLMKGQADTIGIA RRALLGEIEGT
Sbjct: 1 MIREKVTISTRTLQWKCVESRTDNKRLFYGRFILSPLMKGQADTIGIATRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHEFSTIAGIQESIHEILMNLK +VL+SNLYGTCDASI VKGPGY+TAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYITAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPPFVEIIDNTQHIASLTE IDLCIGLQIERNRGYRIKPTNNF +
Sbjct: 121 IILPPFVEIIDNTQHIASLTEPIDLCIGLQIERNRGYRIKPTNNFHE 167
>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
Length = 337
Score = 306 bits (784), Expect = 2e-81
Identities = 150/167 (89%), Positives = 158/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP VEI+DNTQHIASLTE IDLCIGLQIERNRGYRIK NNFQD
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQD 167
>gb|ADD31225.1| RNA polymerase alpha subunit protein [Cornus florida]
Length = 337
Score = 305 bits (780), Expect = 6e-81
Identities = 149/167 (89%), Positives = 158/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKI HE+STI GIQES+HEILMNLK +VL+S LYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIQHEYSTIVGIQESVHEILMNLKEIVLRSTLYGTCDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP+VEI+DNTQ+IASLTE IDLCIGLQIERNRGYRIKP NNFQD
Sbjct: 121 IISPPYVEIVDNTQYIASLTEPIDLCIGLQIERNRGYRIKPPNNFQD 167
>gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]
Length = 337
Score = 304 bits (778), Expect = 1e-80
Identities = 148/167 (88%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVT QD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VEI+DNTQHIASLTE IDLCIGLQIERNRGY IK NNFQD
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQD 167
>ref|YP_007317280.1| RNA polymerase alpha subunit (chloroplast) [Camellia sinensis]
gi|552539616|ref|YP_008592789.1| DNA-directed RNA
polymerase alpha subunit (chloroplast) [Camellia
cuspidata] gi|552540865|ref|YP_008592875.1| DNA-directed
RNA polymerase alpha subunit (chloroplast) [Camellia
danzaiensis] gi|552540958|ref|YP_008592965.1|
DNA-directed RNA polymerase alpha subunit (chloroplast)
[Camellia impressinervis]
gi|552541052|ref|YP_008593143.1| DNA-directed RNA
polymerase alpha subunit (chloroplast) [Camellia
yunnanensis] gi|552546211|ref|YP_008593054.1|
DNA-directed RNA polymerase alpha subunit (chloroplast)
[Camellia pitardii] gi|388893238|gb|AFK81330.1| RNA
polymerase alpha subunit [Camellia sinensis var.
assamica] gi|388893326|gb|AFK81417.1| RNA polymerase
alpha subunit [Camellia oleifera]
gi|430728304|gb|AGA55628.1| RNA polymerase alpha subunit
(chloroplast) [Camellia sinensis]
gi|537362434|gb|AGU44242.1| DNA-directed RNA polymerase
alpha subunit (chloroplast) [Camellia cuspidata]
gi|537362524|gb|AGU44331.1| DNA-directed RNA polymerase
alpha subunit (chloroplast) [Camellia danzaiensis]
gi|537362612|gb|AGU44418.1| DNA-directed RNA polymerase
alpha subunit (chloroplast) [Camellia impressinervis]
gi|537362792|gb|AGU44596.1| DNA-directed RNA polymerase
alpha subunit (chloroplast) [Camellia pitardii]
gi|537362882|gb|AGU44685.1| DNA-directed RNA polymerase
alpha subunit (chloroplast) [Camellia yunnanensis]
gi|555945947|gb|AGZ19174.1| RNA polymerase alpha subunit
(chloroplast) [Camellia sinensis]
Length = 335
Score = 302 bits (774), Expect = 3e-80
Identities = 147/167 (88%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCV+SR D+KRLYYGRFILSPL+KGQADTIGI MRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVDSRADSKRLYYGRFILSPLLKGQADTIGIVMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKKIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP+VEI+DNTQHIASLTE IDLCI LQIERNRGYRIK NNFQD
Sbjct: 121 IISPPYVEIVDNTQHIASLTEPIDLCIRLQIERNRGYRIKSPNNFQD 167
>ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana undulata]
gi|347453943|gb|AEO95601.1| RNA polymerase alpha subunit
(chloroplast) [Nicotiana undulata]
gi|347454054|gb|AEO95711.1| RNA polymerase alpha subunit
[synthetic construct]
Length = 337
Score = 302 bits (774), Expect = 3e-80
Identities = 148/167 (88%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPPFVEI+DNTQHIASLTE ID CIGLQIERNRGY IK +NFQD
Sbjct: 121 IILPPFVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQD 167
>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
gi|108773161|ref|YP_635671.1| RNA polymerase alpha
subunit [Solanum tuberosum]
gi|565356831|ref|XP_006345266.1| PREDICTED: DNA-directed
RNA polymerase subunit alpha-like [Solanum tuberosum]
gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
[Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
polymerase alpha subunit [Solanum bulbocastanum]
gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
[Solanum tuberosum] gi|329124614|gb|AEB72171.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
tuberosum] gi|329124701|gb|AEB72257.1| RNA polymerase
alpha subunit (chloroplast) [Solanum tuberosum]
Length = 337
Score = 301 bits (772), Expect = 5e-80
Identities = 147/167 (88%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VEI+DNTQHIASLTE ID CIGLQIERNRGY IK +NFQD
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQD 167
>gb|ADD31212.1| RNA polymerase alpha subunit protein [Aucuba japonica]
Length = 349
Score = 301 bits (772), Expect = 5e-80
Identities = 147/167 (88%), Positives = 156/167 (93%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMK QADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKSQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQESIHEILMNLK +VL+SNLYGTCD SI V+GPGY+TAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTCDTSICVRGPGYITAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VEI+D TQHIASLTE IDLCIGLQIERNRGY IK NNFQD
Sbjct: 121 IILPPYVEIVDKTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQD 167
>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
subunit [Olea woodiana subsp. woodiana]
gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
subunit [Olea europaea subsp. maroccana]
gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
(chloroplast) [Olea europaea]
gi|291059284|gb|ADD72120.1| RNA polymerase alpha subunit
[Olea europaea] gi|328795464|emb|CBR30346.1| RNA
polymerase alpha subunit [Olea europaea subsp. europaea]
gi|334084432|emb|CBR23861.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334084518|emb|CBR24655.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334084604|emb|CBR30439.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334084690|emb|CBS29383.1| RNA polymerase alpha
subunit [Olea woodiana subsp. woodiana]
gi|334084895|emb|CBS29273.1| RNA polymerase alpha
subunit [Olea europaea subsp. maroccana]
gi|334084981|emb|CBJ04329.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334085067|emb|CBR23770.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|510934435|emb|CCQ09133.1| RNA polymerase alpha
subunit (chloroplast) [Olea europaea subsp. europaea]
Length = 337
Score = 301 bits (771), Expect = 6e-80
Identities = 146/167 (87%), Positives = 158/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITR KSE +PHE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VEI+DNTQHIASLTE IDLCIGLQI+RNRGY IK +NFQD
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQD 167
>gb|AFK81504.1| RNA polymerase alpha subunit [Camellia taliensis]
Length = 335
Score = 300 bits (769), Expect = 1e-79
Identities = 146/167 (87%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCV+SR ++KRLYYGRFILSPL+KGQADTIGI MRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVDSRANSKRLYYGRFILSPLLKGQADTIGIVMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKKIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP+VEI+DNTQHIASLTE IDLCI LQIERNRGYRIK NNFQD
Sbjct: 121 IISPPYVEIVDNTQHIASLTEPIDLCIRLQIERNRGYRIKSPNNFQD 167
>ref|YP_008520171.1| DNA-directed RNA polymerase alpha subunit (chloroplast) [Camellia
taliensis] gi|537362702|gb|AGU44507.1| DNA-directed RNA
polymerase alpha subunit (chloroplast) [Camellia
taliensis] gi|537362972|gb|AGU44774.1| DNA-directed RNA
polymerase alpha subunit (chloroplast) [Camellia
taliensis]
Length = 335
Score = 300 bits (769), Expect = 1e-79
Identities = 146/167 (87%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCV+SR ++KRLYYGRFILSPL+KGQADTIGI MRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVDSRANSKRLYYGRFILSPLLKGQADTIGIVMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKKIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP+VEI+DNTQHIASLTE IDLCI LQIERNRGYRIK NNFQD
Sbjct: 121 IISPPYVEIVDNTQHIASLTEPIDLCIRLQIERNRGYRIKSPNNFQD 167
>ref|YP_005296132.1| rpoA gene product (chloroplast) [Pentactina rupicola]
gi|371532654|gb|AEX31764.1| RNA polymerase alpha subunit
(chloroplast) [Pentactina rupicola]
Length = 326
Score = 300 bits (769), Expect = 1e-79
Identities = 147/167 (88%), Positives = 158/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP VEI+DNTQHIA+LTE I+LCI LQIERNRGYRIK NNFQD
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQD 167
>ref|XP_004228576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
alpha-like [Solanum lycopersicum]
Length = 337
Score = 300 bits (768), Expect = 1e-79
Identities = 146/167 (87%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT +ASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VEI+DNTQHIASLTE ID CIGLQIERNRGY IK +NFQD
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQD 167
>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
(chloroplast) [Solanum lycopersicum]
gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
[Solanum lycopersicum] gi|89241703|emb|CAJ32426.1| RNA
polymerase alpha chain [Solanum lycopersicum]
Length = 337
Score = 300 bits (768), Expect = 1e-79
Identities = 146/167 (87%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT +ASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VEI+DNTQHIASLTE ID CIGLQIERNRGY IK +NFQD
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQD 167
>ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [Capsicum annuum]
gi|401065964|gb|AFP90808.1| RNA polymerase alpha subunit
(chloroplast) [Capsicum annuum]
Length = 337
Score = 300 bits (767), Expect = 2e-79
Identities = 146/167 (87%), Positives = 156/167 (93%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
IILPP+VE +DNTQHIASLTE ID CIGLQIERNRGY IK +NFQD
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQD 167
>gb|AGL13462.1| RNA polymerase alpha subunit (chloroplast) [Liquidambar formosana]
Length = 337
Score = 299 bits (766), Expect = 2e-79
Identities = 148/167 (88%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAKSEKIPHE+STI GIQES+HEILMNLK VVL+SNLYGT DASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP VEI+DNTQHIASLTE IDLCIGL++ERNRGYRIK NNFQD
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLKMERNRGYRIKTPNNFQD 167
>gb|ADM92734.1| RNA polymerase alpha subunit protein [Davidia involucrata]
Length = 328
Score = 299 bits (766), Expect = 2e-79
Identities = 146/167 (87%), Positives = 157/167 (94%)
Frame = -2
Query: 503 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 324
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 323 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 144
CITRAK E+IPHE+STI G QES+HEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKFERIPHEYSTIVGTQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 143 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQD 3
II PP+VEI+D+TQ+IASLTE IDLCIGLQIERNRGYRIK NNFQD
Sbjct: 121 IISPPYVEIVDSTQYIASLTEPIDLCIGLQIERNRGYRIKMPNNFQD 167