BLASTX nr result
ID: Jatropha_contig00017137
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jatropha_contig00017137
(649 letters)
Database: NCBI-nr (updated 2014/02/11)
35,149,712 sequences; 12,374,887,350 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ... 122 7e-26
gb|EOY05932.1| DNA ligase iv-binding protein XRCC4 isoform 3 [Th... 117 2e-24
gb|EOY05931.1| DNA ligase iv-binding protein XRCC4 isoform 2 [Th... 117 2e-24
gb|EOY05930.1| DNA repair protein XRCC4, putative isoform 1 [The... 117 2e-24
gb|ESR33407.1| hypothetical protein CICLE_v10005689mg [Citrus cl... 112 1e-22
gb|ESR33402.1| hypothetical protein CICLE_v10005690mg [Citrus cl... 109 8e-22
gb|ERP56152.1| hypothetical protein POPTR_0010s08650g [Populus t... 107 4e-21
ref|XP_002315726.1| predicted protein [Populus trichocarpa] 107 4e-21
dbj|BAF03494.1| XRCC4 homolog [Populus nigra] 105 1e-20
ref|XP_004495346.1| PREDICTED: DNA repair protein XRCC4-like [Ci... 103 5e-20
gb|EMJ27301.1| hypothetical protein PRUPE_ppa010906mg [Prunus pe... 103 5e-20
ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v... 100 4e-19
emb|CBI26376.3| unnamed protein product [Vitis vinifera] 100 4e-19
ref|XP_002883399.1| hypothetical protein ARALYDRAFT_479818 [Arab... 100 6e-19
ref|XP_006350672.1| PREDICTED: DNA repair protein XRCC4-like iso... 99 8e-19
ref|XP_006350671.1| PREDICTED: DNA repair protein XRCC4-like iso... 99 8e-19
gb|ACJ85144.1| unknown [Medicago truncatula] 98 2e-18
ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatul... 98 2e-18
ref|XP_006298402.1| hypothetical protein CARUB_v10014474mg [Caps... 98 2e-18
dbj|BAD43030.1| putative double strand break repair protein (XRC... 98 2e-18
>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
putative [Ricinus communis]
Length = 265
Score = 122 bits (307), Expect = 7e-26
Identities = 65/120 (54%), Positives = 74/120 (61%)
Frame = +2
Query: 290 TTEAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVY 469
TTEA ARHTCLKL ++ EPIFVKGTWFD+HF+LSITDGLNAWVC+
Sbjct: 7 TTEAETARHTCLKL----EITEPIFVKGTWFDSHFHLSITDGLNAWVCN----------- 51
Query: 470 ILLFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATE VKE AAQWDQPV+EY++LAE YLG QQPGS+Y
Sbjct: 52 -----------------------ATEGQVKERAAQWDQPVSEYINLAEHYLGFQQPGSIY 88
>gb|EOY05932.1| DNA ligase iv-binding protein XRCC4 isoform 3 [Theobroma cacao]
Length = 277
Score = 117 bits (294), Expect = 2e-24
Identities = 62/122 (50%), Positives = 73/122 (59%)
Frame = +2
Query: 284 MDTTEAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLS 463
M+T+ ++ RHTCLKL EPIFVKGTWFD HF++SITDGL+AWVC+
Sbjct: 1 METSSSSTTRHTCLKL--EIPSTEPIFVKGTWFDAHFDISITDGLHAWVCN--------- 49
Query: 464 VYILLFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGS 643
ATEE+VKE AAQWDQPVTEY+ LAE+YLG QQ GS
Sbjct: 50 -------------------------ATEEEVKERAAQWDQPVTEYIELAERYLGFQQSGS 84
Query: 644 VY 649
VY
Sbjct: 85 VY 86
>gb|EOY05931.1| DNA ligase iv-binding protein XRCC4 isoform 2 [Theobroma cacao]
Length = 276
Score = 117 bits (294), Expect = 2e-24
Identities = 62/122 (50%), Positives = 73/122 (59%)
Frame = +2
Query: 284 MDTTEAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLS 463
M+T+ ++ RHTCLKL EPIFVKGTWFD HF++SITDGL+AWVC+
Sbjct: 1 METSSSSTTRHTCLKL--EIPSTEPIFVKGTWFDAHFDISITDGLHAWVCN--------- 49
Query: 464 VYILLFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGS 643
ATEE+VKE AAQWDQPVTEY+ LAE+YLG QQ GS
Sbjct: 50 -------------------------ATEEEVKERAAQWDQPVTEYIELAERYLGFQQSGS 84
Query: 644 VY 649
VY
Sbjct: 85 VY 86
>gb|EOY05930.1| DNA repair protein XRCC4, putative isoform 1 [Theobroma cacao]
Length = 263
Score = 117 bits (294), Expect = 2e-24
Identities = 62/122 (50%), Positives = 73/122 (59%)
Frame = +2
Query: 284 MDTTEAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLS 463
M+T+ ++ RHTCLKL EPIFVKGTWFD HF++SITDGL+AWVC+
Sbjct: 1 METSSSSTTRHTCLKL--EIPSTEPIFVKGTWFDAHFDISITDGLHAWVCN--------- 49
Query: 464 VYILLFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGS 643
ATEE+VKE AAQWDQPVTEY+ LAE+YLG QQ GS
Sbjct: 50 -------------------------ATEEEVKERAAQWDQPVTEYIELAERYLGFQQSGS 84
Query: 644 VY 649
VY
Sbjct: 85 VY 86
>gb|ESR33407.1| hypothetical protein CICLE_v10005689mg [Citrus clementina]
Length = 256
Score = 112 bits (279), Expect = 1e-22
Identities = 59/113 (52%), Positives = 67/113 (59%)
Frame = +2
Query: 311 RHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCA 490
RHTCLKL D +PIF KGTWF THF+LSITDGLNAW+C+
Sbjct: 4 RHTCLKL-EIPDATDPIFAKGTWFQTHFDLSITDGLNAWLCN------------------ 44
Query: 491 FISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+EE VK+ AAQWDQPVTEY+ LAE+YLG QQPGSVY
Sbjct: 45 ----------------ASEEQVKDRAAQWDQPVTEYIKLAERYLGFQQPGSVY 81
>gb|ESR33402.1| hypothetical protein CICLE_v10005690mg [Citrus clementina]
Length = 256
Score = 109 bits (272), Expect = 8e-22
Identities = 59/112 (52%), Positives = 66/112 (58%)
Frame = +2
Query: 314 HTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCAF 493
HTCLKL D +PIFVKGTWF THF+LSITDGLNAW+C+
Sbjct: 6 HTCLKL-EIPDATDPIFVKGTWFQTHFDLSITDGLNAWLCN------------------- 45
Query: 494 ISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+EE VK+ AA WDQPVTEYV LAE+YLG QQPGSVY
Sbjct: 46 ---------------ASEEQVKDRAALWDQPVTEYVKLAERYLGFQQPGSVY 82
>gb|ERP56152.1| hypothetical protein POPTR_0010s08650g [Populus trichocarpa]
Length = 483
Score = 107 bits (266), Expect = 4e-21
Identities = 56/118 (47%), Positives = 70/118 (59%)
Frame = +2
Query: 296 EAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYIL 475
E+ +ARHTCLKL ++ EPIF+KGTWF HFNLSITDGLN+W C+
Sbjct: 2 ESTMARHTCLKL----EIPEPIFIKGTWFPFHFNLSITDGLNSWFCN------------- 44
Query: 476 LFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATEE+V++ AAQWDQPV+ Y+ LAE++LG Q PGSVY
Sbjct: 45 ---------------------ATEEEVRDRAAQWDQPVSTYIQLAEKHLGFQIPGSVY 81
>ref|XP_002315726.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 107 bits (266), Expect = 4e-21
Identities = 56/118 (47%), Positives = 70/118 (59%)
Frame = +2
Query: 296 EAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYIL 475
E+ +ARHTCLKL ++ EPIF+KGTWF HFNLSITDGLN+W C+
Sbjct: 2 ESTMARHTCLKL----EIPEPIFIKGTWFPFHFNLSITDGLNSWFCN------------- 44
Query: 476 LFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATEE+V++ AAQWDQPV+ Y+ LAE++LG Q PGSVY
Sbjct: 45 ---------------------ATEEEVRDRAAQWDQPVSTYIQLAEKHLGFQIPGSVY 81
>dbj|BAF03494.1| XRCC4 homolog [Populus nigra]
Length = 255
Score = 105 bits (262), Expect = 1e-20
Identities = 56/118 (47%), Positives = 69/118 (58%)
Frame = +2
Query: 296 EAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYIL 475
E+ +ARHTCLKL ++ EPIF+KGTWF HFNLSITDGLN+W C+
Sbjct: 2 ESTMARHTCLKL----EIPEPIFIKGTWFPFHFNLSITDGLNSWFCN------------- 44
Query: 476 LFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATEE+V+ AAQWDQPV+ Y+ LAE++LG Q PGSVY
Sbjct: 45 ---------------------ATEEEVRGRAAQWDQPVSTYIQLAEKHLGFQIPGSVY 81
>ref|XP_004495346.1| PREDICTED: DNA repair protein XRCC4-like [Cicer arietinum]
Length = 255
Score = 103 bits (256), Expect = 5e-20
Identities = 55/113 (48%), Positives = 65/113 (57%)
Frame = +2
Query: 311 RHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCA 490
RHTCLKL + + E IFVKGTWFDTHFNLSITDG AW C+
Sbjct: 6 RHTCLKLQINGE--EAIFVKGTWFDTHFNLSITDGFTAWYCY------------------ 45
Query: 491 FISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+EE++K+ AAQWDQPV+EYV L+E YLG QQ GS+Y
Sbjct: 46 ----------------ASEEELKQRAAQWDQPVSEYVQLSESYLGFQQHGSIY 82
>gb|EMJ27301.1| hypothetical protein PRUPE_ppa010906mg [Prunus persica]
Length = 231
Score = 103 bits (256), Expect = 5e-20
Identities = 56/126 (44%), Positives = 71/126 (56%)
Frame = +2
Query: 272 QPSKMDTTEAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTY 451
QP+ M+T +HTCLKL + +PI+VKGTWF++ F+LSITDGLNAW+CH
Sbjct: 49 QPATMETPSP---KHTCLKL-QLKEAQQPIYVKGTWFESRFDLSITDGLNAWICH----- 99
Query: 452 RLLSVYILLFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQ 631
A+EE V++ AAQWDQPV+EYV LAE+YLG Q
Sbjct: 100 -----------------------------ASEEQVRDRAAQWDQPVSEYVALAERYLGFQ 130
Query: 632 QPGSVY 649
P S Y
Sbjct: 131 HPDSAY 136
>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
Length = 259
Score = 100 bits (249), Expect = 4e-19
Identities = 51/113 (45%), Positives = 69/113 (61%)
Frame = +2
Query: 311 RHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCA 490
RH+CLKL + +EPIF+K TWF +HF+LSITDGL+AW+C+
Sbjct: 6 RHSCLKL-QIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCN------------------ 46
Query: 491 FISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+E++V+E AAQWDQPV++Y+ LAE++LG QQPGSVY
Sbjct: 47 ----------------ASEDEVRERAAQWDQPVSDYIALAERFLGFQQPGSVY 83
>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 100 bits (249), Expect = 4e-19
Identities = 51/113 (45%), Positives = 69/113 (61%)
Frame = +2
Query: 311 RHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCA 490
RH+CLKL + +EPIF+K TWF +HF+LSITDGL+AW+C+
Sbjct: 6 RHSCLKL-QIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCN------------------ 46
Query: 491 FISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+E++V+E AAQWDQPV++Y+ LAE++LG QQPGSVY
Sbjct: 47 ----------------ASEDEVRERAAQWDQPVSDYIALAERFLGFQQPGSVY 83
>ref|XP_002883399.1| hypothetical protein ARALYDRAFT_479818 [Arabidopsis lyrata subsp.
lyrata] gi|297329239|gb|EFH59658.1| hypothetical protein
ARALYDRAFT_479818 [Arabidopsis lyrata subsp. lyrata]
Length = 248
Score = 99.8 bits (247), Expect = 6e-19
Identities = 52/118 (44%), Positives = 69/118 (58%)
Frame = +2
Query: 296 EAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYIL 475
E+ +HTCL+L S A+PIFVKGTW ++HF++S+TDG ++W+C+
Sbjct: 3 ESEKTKHTCLRLEISG--ADPIFVKGTWHNSHFDISVTDGSSSWICN------------- 47
Query: 476 LFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATEE+V E AAQWDQPV+EY+ LAE+YLG QQP SVY
Sbjct: 48 ---------------------ATEEEVAERAAQWDQPVSEYLELAERYLGFQQPNSVY 84
>ref|XP_006350672.1| PREDICTED: DNA repair protein XRCC4-like isoform X2 [Solanum
tuberosum]
Length = 224
Score = 99.4 bits (246), Expect = 8e-19
Identities = 54/117 (46%), Positives = 66/117 (56%)
Frame = +2
Query: 299 AAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILL 478
+A +HTCLKL S E IFVKGTWF +HF+L ITDGL +W CH
Sbjct: 3 SASPKHTCLKLVISNK--EQIFVKGTWFSSHFDLFITDGLQSWTCH-------------- 46
Query: 479 FSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+EE+V+E A+QWDQPV+EY+ LAE+YLG QQPGS Y
Sbjct: 47 --------------------ASEEEVEERASQWDQPVSEYIDLAEKYLGFQQPGSAY 83
>ref|XP_006350671.1| PREDICTED: DNA repair protein XRCC4-like isoform X1 [Solanum
tuberosum]
Length = 267
Score = 99.4 bits (246), Expect = 8e-19
Identities = 54/117 (46%), Positives = 66/117 (56%)
Frame = +2
Query: 299 AAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILL 478
+A +HTCLKL S E IFVKGTWF +HF+L ITDGL +W CH
Sbjct: 3 SASPKHTCLKLVISNK--EQIFVKGTWFSSHFDLFITDGLQSWTCH-------------- 46
Query: 479 FSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+EE+V+E A+QWDQPV+EY+ LAE+YLG QQPGS Y
Sbjct: 47 --------------------ASEEEVEERASQWDQPVSEYIDLAEKYLGFQQPGSAY 83
>gb|ACJ85144.1| unknown [Medicago truncatula]
Length = 135
Score = 98.2 bits (243), Expect = 2e-18
Identities = 54/113 (47%), Positives = 65/113 (57%)
Frame = +2
Query: 311 RHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCA 490
RHTCLKL + + E IFVKGTWF+THFNLSITDG +W C+
Sbjct: 6 RHTCLKLQLTEE--ESIFVKGTWFNTHFNLSITDGSTSWHCN------------------ 45
Query: 491 FISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+E++VK+ AAQWDQPV EYV L+E+YLG QQP SVY
Sbjct: 46 ----------------ASEDEVKQRAAQWDQPVEEYVELSERYLGFQQPESVY 82
>ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
gi|355479842|gb|AES61045.1| DNA repair protein XRCC4
[Medicago truncatula]
Length = 256
Score = 98.2 bits (243), Expect = 2e-18
Identities = 54/113 (47%), Positives = 65/113 (57%)
Frame = +2
Query: 311 RHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYILLFSCA 490
RHTCLKL + + E IFVKGTWF+THFNLSITDG +W C+
Sbjct: 6 RHTCLKLQLTEE--ESIFVKGTWFNTHFNLSITDGSTSWHCN------------------ 45
Query: 491 FISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
A+E++VK+ AAQWDQPV EYV L+E+YLG QQP SVY
Sbjct: 46 ----------------ASEDEVKQRAAQWDQPVEEYVELSERYLGFQQPESVY 82
>ref|XP_006298402.1| hypothetical protein CARUB_v10014474mg [Capsella rubella]
gi|482567111|gb|EOA31300.1| hypothetical protein
CARUB_v10014474mg [Capsella rubella]
Length = 249
Score = 97.8 bits (242), Expect = 2e-18
Identities = 51/118 (43%), Positives = 68/118 (57%)
Frame = +2
Query: 296 EAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYIL 475
E+ +HTCL+L S A+PIFVKGTW+ + F++S+TDG ++W+C+
Sbjct: 3 ESERTKHTCLRLEISG--ADPIFVKGTWYHSRFDISVTDGSSSWICN------------- 47
Query: 476 LFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATEE+V E AAQWDQPV+EY+ LAEQYLG QQP S+Y
Sbjct: 48 ---------------------ATEEEVAERAAQWDQPVSEYLELAEQYLGFQQPDSIY 84
>dbj|BAD43030.1| putative double strand break repair protein (XRCC4) [Arabidopsis
thaliana] gi|56461768|gb|AAV91340.1| At1g61410
[Arabidopsis thaliana] gi|61656135|gb|AAX49370.1|
At1g61410 [Arabidopsis thaliana]
Length = 248
Score = 97.8 bits (242), Expect = 2e-18
Identities = 52/118 (44%), Positives = 68/118 (57%)
Frame = +2
Query: 296 EAAVARHTCLKLGHSADMAEPIFVKGTWFDTHFNLSITDGLNAWVCHGVTTYRLLSVYIL 475
E+ +HTCL+L S A+PIFVKGTW ++ F++S+TDG ++W+C+
Sbjct: 3 ESEKTKHTCLRLEISG--ADPIFVKGTWHNSRFDISVTDGSSSWICN------------- 47
Query: 476 LFSCAFISC*TQFLCSFVKLIATEEDVKEGAAQWDQPVTEYVHLAEQYLGVQQPGSVY 649
ATEE+V E AAQWDQPV+EY+ LAEQYLG QQP SVY
Sbjct: 48 ---------------------ATEEEVAERAAQWDQPVSEYLKLAEQYLGFQQPNSVY 84