BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00016380
         (632 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ...   131   2e-28
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...   129   9e-28
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              128   1e-27
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   128   1e-27
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   124   2e-26
gb|ABK28199.1| unknown [Arabidopsis thaliana]                         123   5e-26
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...   123   5e-26
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...   122   6e-26
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   122   1e-25
ref|NP_680382.1| polynucleotidyl transferase, ribonuclease H-lik...   121   2e-25
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]               120   2e-25
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali...   120   2e-25
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob...   117   2e-24
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]               116   6e-24
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   115   7e-24
ref|XP_002309989.1| predicted protein [Populus trichocarpa]           113   5e-23
ref|XP_002324246.1| predicted protein [Populus trichocarpa]           112   1e-22
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]               111   1e-22
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...   111   1e-22
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...   111   1e-22

>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 308

 Score =  131 bits (329), Expect = 2e-28
 Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 3/192 (1%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQE--VHEYNQAWSNNLVISSEPRPPFSG 239
           +FA  +WW W+ R   IF G +    +R   ++E  V  Y     N LV S++PR     
Sbjct: 80  IFAVIIWWGWKWRCSNIF-GENTKCRDRVKFVKEWVVEVYRAHLGNALVGSTQPR--VER 136

Query: 240 LVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWG 419
           L+ W+ P   WV +N+DG++RGNP LA  GGV+R  EG   GG+ +NIG CSA  AELWG
Sbjct: 137 LIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWG 196

Query: 420 ILQGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARDPGNSIIH 596
           +  GL +AW K   +V+++ D    V FL T  S+      LV  C   + +D    I++
Sbjct: 197 VYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVRIVY 256

Query: 597 IYRGTNHAADAL 632
           +YR  N  AD L
Sbjct: 257 VYREANCLADGL 268


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score =  129 bits (323), Expect = 9e-28
 Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEPRPP-FSGL 242
           VF   VWW W+ R   IF GG+    +R   ++++ E   A +N  V  +E R      L
Sbjct: 93  VFVMAVWWGWKWRCGNIF-GGNGKCRDRVKFIKDLAE-EVAIANAFVKGNEVRVSRVERL 150

Query: 243 VSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGI 422
           VSW+ P   WV LN+DG++RGNP  A  GGV+R   G  +GG+ +NIG CSA  AELWG+
Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210

Query: 423 LQGLRWAWTKGFRQVQVQTDFATTVSFLT---SSSNRLRYKNLVTACRELMARDPGNSII 593
             GL  AW +G R+V+++ D    V FLT   + S+ L +  L+  C + +++     I 
Sbjct: 211 YYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSF--LLRLCYDFLSKGWIVRIS 268

Query: 594 HIYRGTNHAADAL 632
           H+YR  N  AD L
Sbjct: 269 HVYREANRLADGL 281


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  128 bits (322), Expect = 1e-27
 Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 1/190 (0%)
 Frame = +3

Query: 66   VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEPRPPFSGLV 245
            +FA  +WW W+ R   IF   +       ++ +   E  +A S N+++    +P    ++
Sbjct: 501  IFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHSGNVLVGIT-QPRVERMI 559

Query: 246  SWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGIL 425
             W+ P   WV +N+DG++RGNP LA  GGV+R   G   GG+ +NIG CSA  AELWG+ 
Sbjct: 560  GWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVY 619

Query: 426  QGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARDPGNSIIHIY 602
             GL +AW K   +V+++ D    V FL T  S+      LV  C   + +D    I+H+Y
Sbjct: 620  YGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVY 679

Query: 603  RGTNHAADAL 632
            R  N  AD L
Sbjct: 680  REANRLADGL 689


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  128 bits (322), Expect = 1e-27
 Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 1/190 (0%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEPRPPFSGLV 245
           +FA  +WW W+ R   IF   +       ++ +   E  +A S N+++    +P    ++
Sbjct: 392 IFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHSGNVLVGIT-QPRVERMI 450

Query: 246 SWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGIL 425
            W+ P   WV +N+DG++RGNP LA  GGV+R   G   GG+ +NIG CSA  AELWG+ 
Sbjct: 451 GWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVY 510

Query: 426 QGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARDPGNSIIHIY 602
            GL +AW K   +V+++ D    V FL T  S+      LV  C   + +D    I+H+Y
Sbjct: 511 YGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVY 570

Query: 603 RGTNHAADAL 632
           R  N  AD L
Sbjct: 571 REANRLADGL 580


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  124 bits (312), Expect = 2e-26
 Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 8/209 (3%)
 Frame = +3

Query: 30   TSDTIAGSQRRVVFAATVWWVWRMRNDRIFNGG-SNPFVNRAWILQEVHEYNQAWSNNLV 206
            ++DT+ GS+   VFA + WW+WR RNDR FN   S P    ++I   V E  +A   N  
Sbjct: 1134 SADTMMGSEWLRVFAVSCWWLWRWRNDRCFNRNPSIPIDQVSFIFARVKEIKEAMDRNDT 1193

Query: 207  ISSEPRPPFSG-----LVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGY 371
              S+     SG     LV W  P   WV LN+DG+++GNP  AG GG+IR   G     +
Sbjct: 1194 NKSQ----HSGRRKEILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGEIHEVF 1249

Query: 372  MMNIGTCSALAAELWGILQGLRWAWTKGFRQVQVQTDFATTVSFLTSSS-NRLRYKNLVT 548
             +N G+C+   AEL  +L+GL  AW    +QV V  D       L S++     Y +++ 
Sbjct: 1250 AINCGSCTCTKAELLAVLRGLMIAWEGNHKQVIVSVDSELVAKLLISNAPPSSPYIHIIN 1309

Query: 549  ACRELMARDPGNSII-HIYRGTNHAADAL 632
             C  L+AR     +I H YR TN AAD L
Sbjct: 1310 RCLSLIARKEWKIVIEHCYRETNRAADRL 1338


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score =  123 bits (308), Expect = 5e-26
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEV-HEYNQAWSNNLVISSEPRPPFSGL 242
           +FA ++WW W+ R   IF G  +   +R   L+++  E + A      +S         L
Sbjct: 85  LFALSIWWAWKWRCGNIF-GVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERL 143

Query: 243 VSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGI 422
           ++W  P   W  LN+DG++RGNP LA  GGV+R  EG   GG+ +NIG CSA  AELWG+
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203

Query: 423 LQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRLR-YKNLVTACRELMARDPGNSIIHI 599
             GL  AW +   +++++ D    V FL    N +     LV  C + ++RD    I H+
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHV 263

Query: 600 YRGTNHAADAL 632
           YR  N  AD L
Sbjct: 264 YREANRLADGL 274


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score =  123 bits (308), Expect = 5e-26
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEV-HEYNQAWSNNLVISSEPRPPFSGL 242
           +FA ++WW W+ R   IF G  +   +R   L+++  E + A      +S         L
Sbjct: 85  LFALSIWWAWKWRCGNIF-GVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERL 143

Query: 243 VSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGI 422
           ++W  P   W  LN+DG++RGNP LA  GGV+R  EG   GG+ +NIG CSA  AELWG+
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203

Query: 423 LQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRLR-YKNLVTACRELMARDPGNSIIHI 599
             GL  AW +   +++++ D    V FL    N +     LV  C + ++RD    I H+
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHV 263

Query: 600 YRGTNHAADAL 632
           YR  N  AD L
Sbjct: 264 YREANRLADGL 274


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score =  122 bits (307), Expect = 6e-26
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEV-HEYNQAWSNNLVISSEPRPPFSGL 242
           +FA ++WW W+ R   IF G  +   +R   L+++  E + A      +S         L
Sbjct: 85  LFALSIWWAWKWRCGNIF-GVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERL 143

Query: 243 VSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGI 422
           ++W  P   W  LN+DG++RGNP LA  GGV+R  EG   GG+ +NIG CSA  AELWG+
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203

Query: 423 LQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRLR-YKNLVTACRELMARDPGNSIIHI 599
             GL  AW +   +++++ D    V FL    N +     LV  C + ++RD    I H+
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLVRLCHDFISRDWRVRISHV 263

Query: 600 YRGTNHAADAL 632
           YR  N  AD L
Sbjct: 264 YREANRLADGL 274


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 676

 Score =  122 bits (305), Expect = 1e-25
 Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 8/202 (3%)
 Frame = +3

Query: 51   SQRR---VVFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEP 221
            S+RR    +FA TVWW W+ R   +F   S       ++   V E   A   +L  + + 
Sbjct: 440  SERRSWPTLFALTVWWGWKWRCGYVFGEDSRCRDRVKFLKSAVAEVEAA---HLAANGDA 496

Query: 222  RPPF--SGLVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCS 395
            R       +++W  P   WV +N+DG++ GNP  A  GGVIR   G  + G+ +NIG CS
Sbjct: 497  REDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCS 556

Query: 396  ALAAELWGILQGLRWAWTKGFRQVQVQTDFATTVSFLTS---SSNRLRYKNLVTACRELM 566
            A  AELWG+  GL  AW +G+R+V+++ D A  V FL S    S+ L +  LV  C   +
Sbjct: 557  APLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAF--LVRLCHGFI 614

Query: 567  ARDPGNSIIHIYRGTNHAADAL 632
            ++D    I H+YR  N  AD L
Sbjct: 615  SKDWIVRITHVYREANRLADGL 636


>ref|NP_680382.1| polynucleotidyl transferase, ribonuclease H-like superfamily
           protein [Arabidopsis thaliana]
           gi|332007502|gb|AED94885.1| polynucleotidyl transferase,
           ribonuclease H-like superfamily protein [Arabidopsis
           thaliana]
          Length = 258

 Score =  121 bits (303), Expect = 2e-25
 Identities = 68/173 (39%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
 Frame = +3

Query: 66  VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQE--VHEYNQAWSNNLVISSEPRPPFSG 239
           +FA  +WW W+ R   IF G +    +R   ++E  V  Y     N LV S++PR     
Sbjct: 80  IFAVIIWWGWKWRCSNIF-GENTKCRDRVKFVKEWVVEVYRAHLGNALVGSTQPR--VER 136

Query: 240 LVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWG 419
           L+ W+ P   WV +N+DG++RGNP LA  GGV+R  EG   GG+ +NIG CSA  AELWG
Sbjct: 137 LIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWG 196

Query: 420 ILQGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARD 575
           +  GL +AW K   +V+++ D    V FL T  S+      LV  C   + +D
Sbjct: 197 VYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKD 249


>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
          Length = 253

 Score =  120 bits (302), Expect = 2e-25
 Identities = 68/198 (34%), Positives = 99/198 (50%), Gaps = 1/198 (0%)
 Frame = +3

Query: 42  IAGSQRRVVFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEP 221
           I G    V F+  +WW W+ R   IF           +I     +  +A  + + +++  
Sbjct: 17  INGCPWAVTFSQAIWWGWKWRYGNIFGENKKCRDRVRFIKDRALDVWKAHVHKMGVTTRT 76

Query: 222 RPPFSGLVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSAL 401
                 L++W PP   W  LN+DG++RGNP LA  GGV+R  +G+   G+ +NIG CSA 
Sbjct: 77  ARE-ERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAP 135

Query: 402 AAELWGILQGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARDP 578
            AELWG   GL  AW +G  Q++++ D    V FL T   +      LV  C  L+++D 
Sbjct: 136 LAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDW 195

Query: 579 GNSIIHIYRGTNHAADAL 632
              I H+YR  N  AD L
Sbjct: 196 SVRISHVYREANRLADGL 213


>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
           gi|55978717|gb|AAV68820.1| hypothetical protein
           AT1G17390 [Arabidopsis thaliana]
          Length = 272

 Score =  120 bits (302), Expect = 2e-25
 Identities = 68/198 (34%), Positives = 99/198 (50%), Gaps = 1/198 (0%)
 Frame = +3

Query: 42  IAGSQRRVVFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEP 221
           I G    V F+  +WW W+ R   IF           +I     +  +A  + + +++  
Sbjct: 36  INGCPWAVTFSQAIWWGWKWRYGNIFGENKKCRDRVRFIKDRALDVWKAHVHKMGVTTRT 95

Query: 222 RPPFSGLVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSAL 401
                 L++W PP   W  LN+DG++RGNP LA  GGV+R  +G+   G+ +NIG CSA 
Sbjct: 96  ARE-ERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAP 154

Query: 402 AAELWGILQGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARDP 578
            AELWG   GL  AW +G  Q++++ D    V FL T   +      LV  C  L+++D 
Sbjct: 155 LAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDW 214

Query: 579 GNSIIHIYRGTNHAADAL 632
              I H+YR  N  AD L
Sbjct: 215 SVRISHVYREANRLADGL 232


>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
 Frame = +3

Query: 63  VVFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQE--VHEYNQAWSNNLVISSEPRPPFS 236
           +VF    W+ W+ RN  IF G       R  I++   V+ +N  WS   +IS   R    
Sbjct: 191 IVFGIACWYTWKWRNLFIFEGRELSVEGRLSIIKSMAVNSHN-TWSTPSIISGGMRHQEE 249

Query: 237 GLVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELW 416
            LV W PP + W+A+NSDG  +     A  GGV+R A G  + GY   + T S L  ELW
Sbjct: 250 ILVGWSPPPKDWIAVNSDGVFKSAARTAAAGGVLRDAHGTWIVGYACKLETSSGLRVELW 309

Query: 417 GILQGLRWAWTKGFRQVQVQTDFATTVSFLT-SSSNRLRYKNLVTACRELMARDPGNSII 593
           G  +GL+ AW +GFR+V++Q+D    V  ++ SS +     +L+ A + ++ R    +I 
Sbjct: 310 GFYKGLQLAWERGFRKVKLQSDNKAMVQAISFSSVHPCSNLDLIRAIKGMLGRHWEVNIS 369

Query: 594 HIYRGTNHAAD 626
           HIYR  N  AD
Sbjct: 370 HIYREANTTAD 380


>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
          Length = 528

 Score =  116 bits (290), Expect = 6e-24
 Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 4/201 (1%)
 Frame = +3

Query: 42  IAGSQRRVVFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLV-ISSE 218
           I G+   +VF    W++W+ RN  +F+   NP   R  +++ +     A S +   +  E
Sbjct: 179 ILGNPWSIVFRLACWYLWKWRNGVVFDVAFNPTRKRISMIKSMATATIAPSADFDGVQVE 238

Query: 219 PRPPFSGLVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSA 398
            R     L+ W  P   WV LN+DG+ + +   A  GGV R AEG    G++  +G CSA
Sbjct: 239 RRKKEEVLIEWRAPQVGWVCLNTDGAYKRSIEEASAGGVKRNAEGDWQAGFVAKLGKCSA 298

Query: 399 LAAELWGILQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRL---RYKNLVTACRELMA 569
             AELWGIL GLR AW  GF++VQVQ D    V  +  S+++L      +L++A + ++ 
Sbjct: 299 YRAELWGILHGLRLAWDSGFKKVQVQVDNKMVVQAI--STDKLIPGANTDLISAIKNVLQ 356

Query: 570 RDPGNSIIHIYRGTNHAADAL 632
           ++   S +H YR  N  AD L
Sbjct: 357 KEWEVSFMHTYREGNMVADYL 377


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  115 bits (289), Expect = 7e-24
 Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 1/190 (0%)
 Frame = +3

Query: 66   VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEPRPPFSGLV 245
            +F   +WW W+ R   +F G      +R   ++++ E  +      V +         ++
Sbjct: 1003 LFGMGIWWAWKWRCCDVF-GERKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMI 1061

Query: 246  SWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGIL 425
             W  P   WV + +DG++RGN  LA  GG IR  +G  +GG+ +NIG+C+A  AELWG  
Sbjct: 1062 RWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAY 1121

Query: 426  QGLRWAWTKGFRQVQVQTDFATTVSFL-TSSSNRLRYKNLVTACRELMARDPGNSIIHIY 602
             GL  AW KGFR+V++  D    V FL T  SN      LV  C+    RD    + H+Y
Sbjct: 1122 YGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVY 1181

Query: 603  RGTNHAADAL 632
            R  N  AD L
Sbjct: 1182 REANRLADGL 1191


>ref|XP_002309989.1| predicted protein [Populus trichocarpa]
          Length = 245

 Score =  113 bits (282), Expect = 5e-23
 Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 4/192 (2%)
 Frame = +3

Query: 69  FAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEV---HEYNQAWSNNLVISSEPRPPFSG 239
           F   +W++W+ R +R+F      +      ++ +    E+ Q   N+   SS+       
Sbjct: 17  FGIALWYIWKERCNRVFGVDQGNWFRAILAIKRMVRDTEFTQRHGNDEGRSSKEDTQ--- 73

Query: 240 LVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWG 419
            V W  P    + LN DG ++GNP +AG GGVIR   G  +GG+  NIG CS++ AELW 
Sbjct: 74  -VGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWA 132

Query: 420 ILQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRL-RYKNLVTACRELMARDPGNSIIH 596
           +  GL+ AW +GFR+V +++D    V  +   S R+ R  N++   + ++ RD   +  H
Sbjct: 133 VYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKGMLGRDWEVTTYH 192

Query: 597 IYRGTNHAADAL 632
           +YR  N  AD L
Sbjct: 193 VYREANCVADWL 204


>ref|XP_002324246.1| predicted protein [Populus trichocarpa]
          Length = 245

 Score =  112 bits (279), Expect = 1e-22
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 4/192 (2%)
 Frame = +3

Query: 69  FAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEV---HEYNQAWSNNLVISSEPRPPFSG 239
           F   +W++W+ R +R+F      +      ++ +    E+ Q   N+   SS+       
Sbjct: 17  FGIALWYIWKERCNRVFGVDQGNWFRAILAIKRMVRDTEFTQRHGNDEGRSSKEDTQ--- 73

Query: 240 LVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWG 419
            V W  P    + LN DG ++GNP +AG GGVIR   G  +GG+  NI  CS++ AELW 
Sbjct: 74  -VGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIREHLGAWIGGFARNIDICSSVNAELWA 132

Query: 420 ILQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRL-RYKNLVTACRELMARDPGNSIIH 596
           +  GL+ AW +GFR+V +++D    V  +   S R+ R  N++   ++++ RD   +  H
Sbjct: 133 VYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKDMLGRDWEVTTYH 192

Query: 597 IYRGTNHAADAL 632
           +YR  N  AD L
Sbjct: 193 VYREANCVADWL 204


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score =  111 bits (278), Expect = 1e-22
 Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 4/207 (1%)
 Frame = +3

Query: 24   LQTSDTIAGSQRRVVFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNL 203
            LQ    I G+   VVF    W +W+ RN  +F    NP   R  +++ +     A S + 
Sbjct: 415  LQKQQLILGNPWSVVFGLACWCLWKWRNGVVFYAAFNPTRKRISMIKSMATATIATSADF 474

Query: 204  V-ISSEPRPPFSGLVSWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMN 380
              +  E R     L+ W  P   WV LN+D + + +   A  GGVIR AEG     ++  
Sbjct: 475  DGVQVERRKKEEVLIGWRTPQVGWVCLNTDEAYKRSIEEASTGGVIRNAEGDWQAEFLAK 534

Query: 381  IGTCSALAAELWGILQGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRL---RYKNLVTA 551
            +G CSA  AELWG+L GLR AW  GF++VQVQ D    V  +  S+N+L      +L+ A
Sbjct: 535  LGKCSAYRAELWGVLHGLRLAWDSGFKKVQVQVDNKMVVPAV--STNKLIPGANTDLIRA 592

Query: 552  CRELMARDPGNSIIHIYRGTNHAADAL 632
             ++++ ++   S +H Y   N   D L
Sbjct: 593  IKDVLQKEWEVSFMHTYCEGNMVTDYL 619


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score =  111 bits (278), Expect = 1e-22
 Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 7/191 (3%)
 Frame = +3

Query: 81   VWWVWRMRNDRIF--NGGSNPFVNRAWILQEVHEYNQAWSNNLVI--SSEPRPPFSGLVS 248
            V W W+ R   +F  NG     V   ++     E  QA   +LV   S + R     +VS
Sbjct: 571  VRWGWKWRCGNVFGVNGKCRDMVK--FVRDRASEVIQA---HLVEGNSGKIRGRIERMVS 625

Query: 249  WLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGILQ 428
            W+ P   W+ LN+DG+++GNP LA  GG++R  +G  +GG+ +NIG CSA  AELW +  
Sbjct: 626  WVKPAEGWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRVYY 685

Query: 429  GLRWAWTKGFRQVQVQTDFATTVSFLT---SSSNRLRYKNLVTACRELMARDPGNSIIHI 599
            GL  AW +   +++V+ D    V FLT   S S+ L +  LV  C   ++RD    I H+
Sbjct: 686  GLYIAWERKITRLEVEVDSELVVGFLTTWISDSHPLSF--LVRLCYGFISRDWIVRISHV 743

Query: 600  YRGTNHAADAL 632
            YR  N  AD L
Sbjct: 744  YREANRLADGL 754


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score =  111 bits (278), Expect = 1e-22
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 1/190 (0%)
 Frame = +3

Query: 66   VFAATVWWVWRMRNDRIFNGGSNPFVNRAWILQEVHEYNQAWSNNLVISSEPRPPFSGLV 245
            +F+  +WW W+ R   +F G      +R   ++++ E  +      + +   R     ++
Sbjct: 742  LFSMGIWWAWKWRCGDVF-GERKLCRDRLKFIKDIAEEVRKAHVGTLNNHVKRARVERMI 800

Query: 246  SWLPPYRSWVALNSDGSTRGNPSLAGCGGVIRTAEGH*VGGYMMNIGTCSALAAELWGIL 425
             W  P   WV L +DG++RG+  LA   G I   +G  +GG+ +NIG+C A  AELWG  
Sbjct: 801  RWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAY 860

Query: 426  QGLRWAWTKGFRQVQVQTDFATTVSFLTSSSNRLR-YKNLVTACRELMARDPGNSIIHIY 602
             GL  AW KGFR+V++  D    V FL++  ++      LV  C+    RD    + H+Y
Sbjct: 861  YGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVY 920

Query: 603  RGTNHAADAL 632
            R  N  AD L
Sbjct: 921  REANRLADGL 930