BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00015204
         (690 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773...   107   1e-40
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]    82   2e-29
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...    87   3e-26
ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578...   124   3e-26
ref|XP_004250583.1| PREDICTED: uncharacterized protein LOC101261...    88   1e-25
gb|AAC28209.1| contains similarity to reverse transcriptases [Ar...    85   2e-25
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]    72   1e-24
ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777...   118   2e-24
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza...   117   2e-24
gb|ABB47941.2| retrotransposon protein, putative, unclassified [...   117   2e-24
gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sat...   117   2e-24
emb|CCH50966.1| T4.5 [Malus x robusta]                                 72   7e-24
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...   115   9e-24
gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]              114   2e-23
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]     114   3e-23
emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]            66   2e-22
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...   110   5e-22
emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]    84   2e-21
gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indi...   104   2e-20
gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group...   102   8e-20

>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
          Length = 1950

 Score =  107 bits (268), Expect(3) = 1e-40
 Identities = 46/105 (43%), Positives = 66/105 (62%)
 Frame = -3

Query: 316  AFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSIRLPFRDSLST 137
            AF   S   WH RLGHP    L  L + +++SCNK   + CHSC LGK  RLPF  S S 
Sbjct: 1119 AFLAASSTLWHQRLGHPAPAALERLNKIHVVSCNKVDRSLCHSCQLGKHTRLPFSSSHSI 1178

Query: 136  AYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
             + PF+++H D+WTSP+ S +G  Y ++ LD+++++ W FP+  K
Sbjct: 1179 THAPFELVHCDVWTSPINSLSGFSYYLVCLDDYSHYCWVFPLGKK 1223



 Score = 62.8 bits (151), Expect(3) = 1e-40
 Identities = 30/56 (53%), Positives = 40/56 (71%)
 Frame = -2

Query: 530  LKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDLY 363
            L  +L A ++++NL+S+R+FT DN    EFD  GFSVKD  TG  +LRC+S GDLY
Sbjct: 1051 LNNILVAPSIVRNLLSVRQFTRDNSCSFEFDAHGFSVKDLRTGRVILRCNSDGDLY 1106



 Score = 43.1 bits (100), Expect(3) = 1e-40
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLP 551
            DS A++HMT++ G LT     S++ SI VGNG+ IP+   GH++LP
Sbjct: 999  DSGASTHMTSSDGMLTQRLPPSIS-SITVGNGTTIPVTSRGHSVLP 1043


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score = 81.6 bits (200), Expect(3) = 2e-29
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = -3

Query: 289 WHNRLGHPGQHVL-MSLRQNNLISCNKDKITFCHSCPLGKSIRLPFRDSLSTAYMPFDII 113
           WHNRLGHP  H++ + L + NL   NK     C  C +GK  +  F  S S+   P ++I
Sbjct: 507 WHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELI 566

Query: 112 HSDLW-TSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
           H+DLW  +   SS+GHQY + F+D ++ F W + + HK
Sbjct: 567 HTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHK 604



 Score = 53.1 bits (126), Expect(3) = 2e-29
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
 Frame = -2

Query: 545 SPPLHLKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDL 366
           S  L LKQ+LH   + KNL+S+ KF  DN V+ EF P    VKD  T   L+     G L
Sbjct: 407 SKTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGL 466

Query: 365 Y---------PITNSKCLPLSSTP 321
           Y         P+ NS C   ++ P
Sbjct: 467 YVFDNTQLKLPLHNSSCFASTALP 490



 Score = 41.6 bits (96), Expect(3) = 2e-29
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -3

Query: 688 DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGH 563
           DS AT H+T N  NL + S    +D + VGNG  +PI   GH
Sbjct: 356 DSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGH 397


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score = 87.0 bits (214), Expect(3) = 3e-26
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
 Frame = -3

Query: 289 WHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSIRLPFRDSLSTAYMPFDIIH 110
           WH RLGHP Q VL  L +N  I  +K   + C +C +GK  +LPF  S   +    + +H
Sbjct: 427 WHMRLGHPNQDVLQQLLRNKAIVISKTSHSLCDACQMGKICKLPFASSDFVSSRLLERVH 486

Query: 109 SDLW-TSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            DLW  +PV+SS G +Y V+F+DN++ F W +P+  K
Sbjct: 487 CDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLK 523



 Score = 40.0 bits (92), Expect(3) = 3e-26
 Identities = 26/71 (36%), Positives = 36/71 (50%)
 Frame = -2

Query: 536 LHLKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDLYPI 357
           L L+ VL   N+ K+L+S+ K T D    +EFD  G  VKD  T   L +     DLY +
Sbjct: 347 LPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHNDLYLL 406

Query: 356 TNSKCLPLSST 324
            N K +   S+
Sbjct: 407 ENPKFMACYSS 417



 Score = 38.1 bits (87), Expect(3) = 3e-26
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = -3

Query: 688 DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALL 554
           DS ATSH+T +   L S    S  DS++VGN   +PI   G A+L
Sbjct: 296 DSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVL 340


>ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578284 [Solanum tuberosum]
          Length = 614

 Score =  124 bits (310), Expect = 3e-26
 Identities = 92/231 (39%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPILVHLCISNKCCML 509
            D+ ATSHMT+  GNLTS+ ++S    I+V  G+  PI   G+       H  +S  C  L
Sbjct: 383  DTGATSHMTSAQGNLTSYFNISNKCGIMV--GNGQPIPIHGYG------HTKLSFPCPPL 434

Query: 508  LI*--LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPS----PIR 347
             +   L    L  N + I  F                          + C       PI 
Sbjct: 435  QLNNVLHAPHLVKNLVSIRKFTTDNSVSVEFDPFGFPVKDFQTGRPVMRCESRGKLYPIT 494

Query: 346  NVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKIT-FCHSCPLGKS 170
            N        S F+ L+ + WH+RLGHPG  VL SLR+N LI CN+ K +  CHSCPLGK 
Sbjct: 495  NP---RAFPSTFAALAPSLWHDRLGHPGAPVLNSLRKNKLIECNQIKDSRICHSCPLGKH 551

Query: 169  IRLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTF 17
            ++L F  S S+  MPFDIIHSDLWTS VLSS+GH+Y VLF+D+ + F   F
Sbjct: 552  VKLSFYASNSSTIMPFDIIHSDLWTSLVLSSSGHRYYVLFVDDHSKFCGHF 602


>ref|XP_004250583.1| PREDICTED: uncharacterized protein LOC101261089 [Solanum
           lycopersicum]
          Length = 1140

 Score = 87.8 bits (216), Expect(2) = 1e-25
 Identities = 40/64 (62%), Positives = 48/64 (75%)
 Frame = -2

Query: 536 LHLKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDLYPI 357
           L LK VLH   +IKNL+S+RKFT DN V VEFDPFGFSVKD  TG  ++RC+S+GDLYP 
Sbjct: 398 LQLKNVLHVPKIIKNLISVRKFTTDNHVSVEFDPFGFSVKDLQTGSKIVRCNSSGDLYPF 457

Query: 356 TNSK 345
              +
Sbjct: 458 LTDR 461



 Score = 55.1 bits (131), Expect(2) = 1e-25
 Identities = 27/47 (57%), Positives = 37/47 (78%), Gaps = 2/47 (4%)
 Frame = -3

Query: 688 DSVATSHMTANPGNLTSHSHLS--LNDSIVVGNGSKIPIRGFGHALL 554
           D+ ATSHMT + GNL+ + +LS  +N++I VGNGSKIPI+G+GH  L
Sbjct: 347 DTGATSHMTNSQGNLSPYFNLSNHVNNAITVGNGSKIPIKGYGHECL 393


>gb|AAC28209.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267168|emb|CAB77880.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 467

 Score = 85.1 bits (209), Expect(3) = 2e-25
 Identities = 44/72 (61%), Positives = 54/72 (75%)
 Frame = -2

Query: 539 PLHLKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDLYP 360
           PLHL  VL   ++IKNLVS+R+FT DN V VEFDPFGFS+KD+ T  +LLRC+S G LY 
Sbjct: 353 PLHLHNVLVCPSIIKNLVSVRQFTKDNYVSVEFDPFGFSIKDFNTWTNLLRCNSDGPLYS 412

Query: 359 ITNSKCLPLSST 324
           IT+    PLSS+
Sbjct: 413 ITSP---PLSSS 421



 Score = 49.3 bits (116), Expect(3) = 2e-25
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -3

Query: 688 DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLP 551
           D+ AT+H+TA PG L S  + S + S+VVGNGS +P +  G++ LP
Sbjct: 303 DTGATTHLTAQPGTLHSLFNSSSSPSVVVGNGSSVPTKAIGYSFLP 348



 Score = 28.1 bits (61), Expect(3) = 2e-25
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 289 WHNRLGHPGQHVLMSLRQNNLI 224
           WH RLGH G   L SL  + LI
Sbjct: 440 WHRRLGHLGNTTLQSLISSRLI 461


>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
          Length = 1131

 Score = 71.6 bits (174), Expect(3) = 1e-24
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -3

Query: 289 WHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSIRLPFRDSLSTAYMPFDIIH 110
           WH RLGHP +                     C  C + KS RLPF  S S A  PF ++H
Sbjct: 456 WHFRLGHPAR--------------------VCEPCQMAKSHRLPFTLSESRASQPFALVH 495

Query: 109 SDLW-TSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
           SDLW  +PV+ +NG +Y VLF+D+ T F W + ++ K
Sbjct: 496 SDLWGPAPVVGTNGARYFVLFVDDHTRFSWLYLLAFK 532



 Score = 46.6 bits (109), Expect(3) = 1e-24
 Identities = 27/71 (38%), Positives = 39/71 (54%)
 Frame = -2

Query: 560 TFAHSSPPLHLKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCD 381
           T +  S  L+LK +LH   L  NL+S+ +   DN V VEF   GF VKD  +   LL+ +
Sbjct: 346 TISSVSRSLNLKNILHVPQLTTNLISVNRLCTDNNVTVEFFTNGFVVKDQASKKALLQGN 405

Query: 380 STGDLYPITNS 348
               LY +++S
Sbjct: 406 LNYGLYKLSSS 416



 Score = 41.6 bits (96), Expect(3) = 1e-24
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = -3

Query: 688 DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALL 554
           D+ AT H+T N   L SH+  + +D ++VGNG+++ I   GH+ +
Sbjct: 303 DTGATHHLTPNLNKLNSHTPFAGSDKVMVGNGNRLNISNIGHSTI 347


>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
          Length = 2179

 Score =  118 bits (295), Expect = 2e-24
 Identities = 83/238 (34%), Positives = 116/238 (48%), Gaps = 9/238 (3%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTS-HSHLSLN-DSIVVGNGSKIPIRGFGHALLP------ILVHLC 533
            DS A +HM  N G L+S H  LS +  SI+V NG+ +P+   G    P      +L ++ 
Sbjct: 439  DSGAGAHMVNNAGILSSLHPPLSSSPSSIIVCNGASLPVTSIGSHSFPTTRRPLVLSNVL 498

Query: 532  ISNKCCMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSP 353
            +S      LI ++   +  N  +                       C          P+P
Sbjct: 499  VSPNIIKNLISVRRFTIDNNCSIEF---DPFGLSVKDLQTRSVIARCNSTGDLYPFFPAP 555

Query: 352  IRNVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITF-CHSCPLG 176
                     L +A S  SL  WH RLGH G   L  L  +N+ISCNK      CH+C LG
Sbjct: 556  SSTT---AALTTATSSTSL--WHRRLGHLGHAALFQLISSNVISCNKHNTDHVCHACQLG 610

Query: 175  KSIRLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            + +RLPF  S S A  PFD+IH DLWTSPV+S +G++Y ++ LD+ T++ WTFP+  K
Sbjct: 611  RHVRLPFSVSNSRAIHPFDLIHCDLWTSPVVSVSGYKYYLVILDDCTHYTWTFPLRLK 668


>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
          Length = 1803

 Score =  117 bits (294), Expect = 2e-24
 Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 16/245 (6%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPI------LVHLCIS 527
            D+ A++HM++ PG L     L  +  I VGNG+K+P+       +P       L ++ +S
Sbjct: 371  DTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTHIPTSSTDLHLHNVLVS 430

Query: 526  NKCCMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTC------ 365
                  LI +K L    N  + I F                       + ++ C      
Sbjct: 431  PPLIKNLISVKKLTRDNN--VSIEFDPTGFSIKDLQTQ----------VVKLRCDSPGDL 478

Query: 364  ----IPSPIRNVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITF 197
                +PSP           SA S  S+  WH RLGHPG   L  +  +    CNK     
Sbjct: 479  YPLRLPSPHA--------LSATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNKSAPHH 530

Query: 196  CHSCPLGKSIRLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTF 17
            C +C +G ++RLPF  S S    PF ++H+D+WTSP+ S++G++Y V+FLD+FT+++WTF
Sbjct: 531  CSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTF 590

Query: 16   PISHK 2
            P+ +K
Sbjct: 591  PVRNK 595


>gb|ABB47941.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1414

 Score =  117 bits (294), Expect = 2e-24
 Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 16/245 (6%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPI------LVHLCIS 527
            D+ A++HM++ PG L     L  +  I VGNG+K+P+       +P       L ++ +S
Sbjct: 371  DTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTHIPTSSTDLHLHNVLVS 430

Query: 526  NKCCMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTC------ 365
                  LI +K L    N  + I F                       + ++ C      
Sbjct: 431  PPLIKNLISVKKLTRDNN--VSIEFDPTGFSIKDLQTQ----------VVKLRCDSPGDL 478

Query: 364  ----IPSPIRNVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITF 197
                +PSP           SA S  S+  WH RLGHPG   L  +  +    CNK     
Sbjct: 479  YPLRLPSPHA--------LSATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNKSAPHH 530

Query: 196  CHSCPLGKSIRLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTF 17
            C +C +G ++RLPF  S S    PF ++H+D+WTSP+ S++G++Y V+FLD+FT+++WTF
Sbjct: 531  CSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTF 590

Query: 16   PISHK 2
            P+ +K
Sbjct: 591  PVRNK 595


>gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sativa Japonica Group]
          Length = 1417

 Score =  117 bits (294), Expect = 2e-24
 Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 16/245 (6%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPI------LVHLCIS 527
            D+ A++HM++ PG L     L  +  I VGNG+K+P+       +P       L ++ +S
Sbjct: 371  DTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTHIPTSSTDLHLHNVLVS 430

Query: 526  NKCCMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTC------ 365
                  LI +K L    N  + I F                       + ++ C      
Sbjct: 431  PPLIKNLISVKKLTRDNN--VSIEFDPTGFSIKDLQTQ----------VVKLRCDSPGDL 478

Query: 364  ----IPSPIRNVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITF 197
                +PSP           SA S  S+  WH RLGHPG   L  +  +    CNK     
Sbjct: 479  YPLRLPSPHA--------LSATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNKSAPHH 530

Query: 196  CHSCPLGKSIRLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTF 17
            C +C +G ++RLPF  S S    PF ++H+D+WTSP+ S++G++Y V+FLD+FT+++WTF
Sbjct: 531  CSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTF 590

Query: 16   PISHK 2
            P+ +K
Sbjct: 591  PVRNK 595


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 71.6 bits (174), Expect(3) = 7e-24
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
 Frame = -3

Query: 289  WHNRLGHPGQHVLMSLRQNNLISC--NKDKITFCHSCPLGKSIRLPFRDSLSTAYMPFDI 116
            WH RLGHP    L S+   N +      + ++ C +C LGKS RL F     T+  P  +
Sbjct: 732  WHRRLGHPSGGTLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTSSRPLQL 791

Query: 115  IHSDLW-TSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            +H+D+W  SP  S  G+++ ++ +D+FT + W +P+  K
Sbjct: 792  LHTDVWGPSPTSSCTGYRFYLIIVDDFTKYSWLYPLHFK 830



 Score = 53.1 bits (126), Expect(3) = 7e-24
 Identities = 28/57 (49%), Positives = 32/57 (56%)
 Frame = -2

Query: 530 LKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDLYP 360
           L  VL       NL+S+ KF  DN  Y+ FDPFGF VKD  TG  L +  S G LYP
Sbjct: 647 LNDVLLVPQASHNLLSVYKFVYDNWCYLTFDPFGFYVKDLSTGKMLFQGPSEGGLYP 703



 Score = 32.3 bits (72), Expect(3) = 7e-24
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 688 DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALL 554
           DS A+ H+T +P  L S    S ND + VG+G  + I   G AL+
Sbjct: 594 DSGASHHVTPDPSALNSAIPYSGNDQLFVGDGKGLCISHTGSALI 638


>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score =  115 bits (289), Expect = 9e-24
 Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 6/235 (2%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPI------LVHLCIS 527
            D+ ATSHM++  G L +    S    I VGNG  IP+   G + LPI      L ++ ++
Sbjct: 362  DTGATSHMSSTDGILDTRLPNSYT-FITVGNGHTIPVICHGTSFLPIGTTKFDLKNILVA 420

Query: 526  NKCCMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSPIR 347
                  L+ ++      N  +                         D+       P+   
Sbjct: 421  PSLVRNLLSIRQFTRDNNCSIEFDEFGFSVKGLRTRRVILRCNSRGDLYTLPIAAPAIAA 480

Query: 346  NVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSI 167
            + FL           S   WH RLGHP    + +L +  ++ C K   + CH+C LGK  
Sbjct: 481  HSFLAQ---------SSTLWHRRLGHPSSAAIQTLHKLAILPCTKIDHSLCHACKLGKHT 531

Query: 166  RLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            RLPF  S S+   PF+++H D+WTSPVLS++G +Y ++ LD+F++F WTFP+ HK
Sbjct: 532  RLPFSRSQSSTSSPFELVHCDVWTSPVLSTSGFKYYLVVLDDFSHFCWTFPLRHK 586


>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
          Length = 826

 Score =  114 bits (286), Expect = 2e-23
 Identities = 79/237 (33%), Positives = 116/237 (48%), Gaps = 8/237 (3%)
 Frame = -3

Query: 688  DSVATSHMTANPGNL--TSHSHLSLNDSIVVGNGSKIPIRGFGHALLPILVHLCISNKCC 515
            DS A SHM+++ G L  TS   LS   SI+VGNG+ +P+   G  +        + NK  
Sbjct: 465  DSGAGSHMSSDAGILSTTSPPTLSTPSSIIVGNGALLPVTTIGSRIFSFPHRNLVLNKVL 524

Query: 514  MLLI*LKTL-----FLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSPI 350
            +    +K L     F + N+  I +                      +VIAR       +
Sbjct: 525  VSPHIIKNLISIRRFTTDNNCFIEFDPFGLSVKDLQTR---------NVIARCNS-SGDL 574

Query: 349  RNVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDK-ITFCHSCPLGK 173
               F      +A      + WH RLGH G+  L  L  ++ ISCNKD     CH+C LG+
Sbjct: 575  YPFFPPATSATALLAAPASLWHRRLGHLGREALSQLVSSSAISCNKDDDYHLCHACQLGR 634

Query: 172  SIRLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
              RLPF  S S A   FD+IH DLW SP++S +G++Y ++ LD+ ++++WTFP+  K
Sbjct: 635  HTRLPFSTSTSRATNNFDLIHCDLWASPIVSVSGYKYYLIILDDRSHYIWTFPLRLK 691


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score =  114 bits (285), Expect = 3e-23
 Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 6/235 (2%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPI------LVHLCIS 527
            D+ ATSHM++  G L +    S +  I VGNG  IP+   G + LPI      L ++ ++
Sbjct: 361  DTGATSHMSSTDGILVTRLPNS-HTFITVGNGHTIPVICRGTSFLPIGTTRFALKNILVA 419

Query: 526  NKCCMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSPIR 347
                  L+ ++                                   D+    T +P+   
Sbjct: 420  PSLVRNLLFVRQFTRDNKCSFEFDEFGFSVKDLPTRRVILRCNSRGDLYTLPTTVPAITA 479

Query: 346  NVFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSI 167
            + FL           S   WH+RLGHP    + +L +  ++SC +     CH+C LGK  
Sbjct: 480  HSFLAK---------SSTLWHHRLGHPSPAAVQTLHKLAILSCTRSNNKLCHACHLGKHT 530

Query: 166  RLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            RL F  S S+   PF+++H D+WTSPVLS +G +Y ++ LD+FT+F WTFP+ HK
Sbjct: 531  RLSFSKSSSSTSSPFELVHCDVWTSPVLSLSGFKYYLVVLDDFTHFCWTFPLRHK 585


>emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]
          Length = 1455

 Score = 66.2 bits (160), Expect(2) = 2e-22
 Identities = 35/80 (43%), Positives = 51/80 (63%)
 Frame = -2

Query: 530 LKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDSTGDLYPITN 351
           L+ VL A +L++NL+S+R+FT DN   +EFD FGFS KD  T   +LRC+S G+LY    
Sbjct: 487 LRHVLVAPSLVRNLLSVRQFTRDNKCSIEFDEFGFSFKDPQTRRVILRCNSHGELY---- 542

Query: 350 SKCLPLSSTPVCVFCSLISS 291
              LP ++  +   C+L +S
Sbjct: 543 --TLPAAAPSIAAHCNLATS 560



 Score = 66.2 bits (160), Expect(2) = 2e-22
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = -3

Query: 289 WHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSIRLPFRDSLSTAYMPFDIIH 110
           WH RLGHPG   + +L+  + I  +K   + CH+C LGK  RLPF  S S+   PF+++H
Sbjct: 564 WHRRLGHPGPTAVTTLQHLSAIPRSKTNNSLCHACQLGKHTRLPFNKSTSSTSSPFELVH 623

Query: 109 SDL---------WTSPVLSSNGHQYDVLFLDNFTNFL 26
            D          +     +  GH+   L  DN T F+
Sbjct: 624 CDKSDVHRHIVEFVEYAHTQFGHRLKCLQADNGTEFV 660


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score =  110 bits (274), Expect = 5e-22
 Identities = 76/235 (32%), Positives = 108/235 (45%), Gaps = 6/235 (2%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPILVHLCISNKCCML 509
            DS ATSH+T+N GNL S  + S    + VGNGS  P+   GH  L             + 
Sbjct: 365  DSAATSHITSNIGNLQSTFNTSTMPLVTVGNGSLAPVETIGHGTLSYPSRSFSLRNVLVC 424

Query: 508  LI*LKTL-----FLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSPIRN 344
               +K L     F++ N   I +                        +  VT    P  +
Sbjct: 425  PAIVKNLVSVRKFVTDNWCTIEFDPFGFSVKDLKTRNKLLRCDSSGPLYSVTPSSYPSSH 484

Query: 343  VFLCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKIT-FCHSCPLGKSI 167
              L      +F       WH RLGHP   +L  L  +  IS  K  +T  C +C LGK  
Sbjct: 485  HALAATTSDSFI------WHRRLGHPSSTLLSHLLSSLSISVPKTDLTSLCQACQLGKHT 538

Query: 166  RLPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            RLPF +S + A   F+I+HSD+WTSPV S +G +Y ++FLD +++F+W +P+  K
Sbjct: 539  RLPFFNSNTIASSLFEIVHSDIWTSPVPSISGLKYYLIFLDQYSHFVWAYPLHRK 593


>emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]
          Length = 1007

 Score = 83.6 bits (205), Expect(2) = 2e-21
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
 Frame = -3

Query: 364 IPSPIRNVFLCLLLQSAFSVLSLAQ-WHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHS 188
           +PSP   V       S  S+ ++   WH+RLGHP  ++L  +  +  IS    K   C +
Sbjct: 148 VPSPTAFVSSSYDRSSNISLTTITTLWHSRLGHPADNILKHILTSCNISHQCHKNNVCCA 207

Query: 187 CPLGKSIRLPFRDSLSTAYMPFDIIHSDLW-TSPVLSSNGHQYDVLFLDNFTNFLWTFPI 11
           C   KS +LPF  S+S A  PF ++H+DLW  + + S+ G +Y +LF+D+F++F W +P+
Sbjct: 208 CQFAKSHKLPFNVSVSRASHPFALLHADLWGPTSIPSTTGARYFILFVDDFSHFSWIYPL 267

Query: 10  SHK 2
             K
Sbjct: 268 HSK 270



 Score = 45.1 bits (105), Expect(2) = 2e-21
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = -2

Query: 557 FAHSSPPLHLKQVLHALNLIKNLVSIRKFTVDNMVYVEFDPFGFSVKDYPTGCHLLRCDS 378
           F  SS    L+QVLH  ++  NL+S+ +F  DN  + EF P  F VKD  T   LL+   
Sbjct: 77  FPSSSKIFQLRQVLHVPDIATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSL 136

Query: 377 TGDLY 363
              LY
Sbjct: 137 EHGLY 141


>gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indica Group]
          Length = 964

 Score =  104 bits (260), Expect = 2e-20
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 5/234 (2%)
 Frame = -3

Query: 688  DSVATSHMTANPGNLTSHSHLSLN--DSIVVGNGSKIPIRGFGHALLPILVHLCISNKCC 515
            DS A+SHMT++ G L+  S  + N    I+VG+GS +PI   G        HL   ++  
Sbjct: 568  DSGASSHMTSDAGTLSFSSQPNPNTPSHIIVGDGSPLPITATGST------HLSFPHRSF 621

Query: 514  MLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSPIRNVFL 335
            +L   L +  +  N +++  F                          V C  +   +++L
Sbjct: 622  VLNNVLVSPEIIKNLIVVRRFARDNDVSVEFDKDGLDVKDFHSRNMIVWC--NSFGDLYL 679

Query: 334  CLLLQSAFSVL---SLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSIR 164
                +  +++    S   WH+RLGH G   L  L ++++I   ++ ++ CH+C LG+  R
Sbjct: 680  VRPTELHYALAARESSVLWHHRLGHLGSEALTRLARSSVIPPYRE-LSVCHACQLGRHCR 738

Query: 163  LPFRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            LPF  S + A   FD+IH DLWTSPV S +G++Y ++ LD+ ++F+WTFP+  K
Sbjct: 739  LPFNTSFTRATSNFDLIHCDLWTSPVSSVSGYKYYLVILDDCSHFVWTFPLRLK 792


>gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108709048|gb|ABF96843.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 594

 Score =  102 bits (255), Expect = 8e-20
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 6/232 (2%)
 Frame = -3

Query: 679  ATSHMTANPGNLTSHSHLSLNDSIVVGNGSKIPIRGFGHALLPI------LVHLCISNKC 518
            ATSHM++  G L +    S    I VGNG  IP+   G + LPI      L H+ ++   
Sbjct: 357  ATSHMSSTDGILVTRLPNS-QTYITVGNGHSIPVVCRGTSFLPIGTTRFDLRHVLVAPSL 415

Query: 517  CMLLI*LKTLFLSANSLLIIWFMXXXXXXXXXXXXXXXXXIC*DVIARVTCIPSPIRNVF 338
               L+ ++  F   N   I +                    C +    +  +P+   ++ 
Sbjct: 416  VRNLLSIRQ-FTRDNKCSIEF--DEFGFSIKDPQTRRVILRC-NSHGELYTLPAAAPSIA 471

Query: 337  LCLLLQSAFSVLSLAQWHNRLGHPGQHVLMSLRQNNLISCNKDKITFCHSCPLGKSIRLP 158
                L ++ ++     WH RLGHPG   + +L+  + I  +K   + CH+C LGK  RLP
Sbjct: 472  AHYNLATSSTL-----WHRRLGHPGPTAVTTLQHLSAIPRSKTNNSLCHACQLGKHTRLP 526

Query: 157  FRDSLSTAYMPFDIIHSDLWTSPVLSSNGHQYDVLFLDNFTNFLWTFPISHK 2
            F  S S+   PF+++H D+WTS V+S +G ++ ++ +D+FT+F WTFP+  K
Sbjct: 527  FNKSTSSTSSPFELVHCDVWTSLVMSISGFKFYLVLVDDFTHFCWTFPLCQK 578