BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00014150
         (624 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   370   e-100
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   363   2e-98
gb|ESR36195.1| hypothetical protein CICLE_v10028849mg [Citrus cl...   353   2e-95
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   352   6e-95
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   350   1e-94
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   347   1e-93
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   347   1e-93
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   345   4e-93
gb|EEE87820.2| DNA-directed RNA polymerase II 36 kDa polypeptide...   344   1e-92
ref|XP_002313865.1| predicted protein [Populus trichocarpa]           344   1e-92
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   344   1e-92
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   340   2e-91
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   336   3e-90
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   336   3e-90
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   335   8e-90
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps...   333   2e-89
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   333   2e-89
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   332   4e-89
gb|ESQ51010.1| hypothetical protein EUTSA_v10022739mg [Eutrema s...   332   6e-89
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   331   8e-89

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  370 bits (951), Expect = e-100
 Identities = 182/196 (92%), Positives = 192/196 (97%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+GASYQRFP++KIRELKDDYCKF L DTD+SMANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC+YCSVEFHLRAKCITDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD-SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           TSKDLYSSDHTV+PVDFSD SGY+S+EQRGIIIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEPDIHIN
Sbjct: 181 PAATVTFMYEPDIHIN 196


>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  363 bits (932), Expect = 2e-98
 Identities = 180/196 (91%), Positives = 190/196 (96%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQRFPKVKIRELKDDY KF L DTD+SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC+TDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSDS-GYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           TSKDLYSSDHTV+PVDF+DS GY+S+EQRGIIIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEP+IHIN
Sbjct: 181 PAATVTFMYEPEIHIN 196


>gb|ESR36195.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  353 bits (907), Expect = 2e-95
 Identities = 178/197 (90%), Positives = 189/197 (95%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           MDGASYQRFPKVKIRELKDDY KF L DTD+SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD-SGYES-NEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           TSKDLYSSDH+V+PVDF D +GY+S ++QRGIIIVKLRRGQELRL+AIARK IGKDHAKW
Sbjct: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEP+IHIN
Sbjct: 181 SPAATVTFMYEPEIHIN 197


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  352 bits (902), Expect = 6e-95
 Identities = 172/196 (87%), Positives = 188/196 (95%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQRFPK+KIRE+KDDY KF L +TD+SMANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC+TD+TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD-SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           TSKDL SSDHTV+PVDFSD SGY+S +++GIIIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEP+IHIN
Sbjct: 181 PAATVTFMYEPEIHIN 196


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  350 bits (899), Expect = 1e-94
 Identities = 171/196 (87%), Positives = 188/196 (95%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQRFPK+KIRE+KDDY KF L +TD+SMANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKC+TD+TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD-SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           TSKDL SSDHTV+PVDFSD SGY+S +++GIIIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEP+IHIN
Sbjct: 181 PAATVTFMYEPEIHIN 196


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score =  347 bits (891), Expect = 1e-93
 Identities = 174/197 (88%), Positives = 184/197 (93%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+GASY R P+VKIRELKDDY KF L DTD+S+ANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEYCSVEFHLR KCITDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFS--DSGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           TSKDLYSSDHTV+PVDFS   S  ES++ RGIIIVKLRRGQELRL+AIARK IGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEPDIHIN
Sbjct: 181 SPAATVTFMYEPDIHIN 197


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  347 bits (890), Expect = 1e-93
 Identities = 174/198 (87%), Positives = 185/198 (93%), Gaps = 3/198 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G+SYQRFPKVKIREL+DDY KF L DTD+SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSDSGY---ESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAK 570
           TSKDLYSSDHTV+PVDFSDS     E+ + +GIIIVKLRRGQELRL+AIARK IGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 571 WSPAATVTFMYEPDIHIN 624
           WSPAATVTFMYEP IHIN
Sbjct: 181 WSPAATVTFMYEPSIHIN 198


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  345 bits (886), Expect = 4e-93
 Identities = 170/196 (86%), Positives = 186/196 (94%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQRFP+VKIRE++ DY KF L DTD+S+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1   MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEYCSVEFHLRA+C +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD-SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           TSK+L SSDHTV+PVDFSD SGYE++EQRGIIIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 TSKELLSSDHTVVPVDFSDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEPDI IN
Sbjct: 181 PAATVTFMYEPDIRIN 196


>gb|EEE87820.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
           [Populus trichocarpa]
          Length = 323

 Score =  344 bits (883), Expect = 1e-92
 Identities = 174/202 (86%), Positives = 184/202 (91%), Gaps = 7/202 (3%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+  SYQRFPK+KIRE+KDDY KF L +TD+SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSDSGYESNE-------QRGIIIVKLRRGQELRLKAIARKWIGK 558
           TSKDLYSSDH VIPVDFSD   ++N+       QRGIIIVKLRRGQELRL+AIARK IGK
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPS-DANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGK 179

Query: 559 DHAKWSPAATVTFMYEPDIHIN 624
           DHAKWSPAATVTFMYEP+IHIN
Sbjct: 180 DHAKWSPAATVTFMYEPEIHIN 201


>ref|XP_002313865.1| predicted protein [Populus trichocarpa]
          Length = 346

 Score =  344 bits (883), Expect = 1e-92
 Identities = 174/202 (86%), Positives = 184/202 (91%), Gaps = 7/202 (3%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+  SYQRFPK+KIRE+KDDY KF L +TD+SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSDSGYESNE-------QRGIIIVKLRRGQELRLKAIARKWIGK 558
           TSKDLYSSDH VIPVDFSD   ++N+       QRGIIIVKLRRGQELRL+AIARK IGK
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPS-DANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGK 179

Query: 559 DHAKWSPAATVTFMYEPDIHIN 624
           DHAKWSPAATVTFMYEP+IHIN
Sbjct: 180 DHAKWSPAATVTFMYEPEIHIN 201


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  344 bits (882), Expect = 1e-92
 Identities = 170/196 (86%), Positives = 185/196 (94%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQR P+VKIRE++DDY KF L DTD+S+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1   MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSDS-GYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           TSKDL SSDHTV+PVDFSDS G ES+EQ+GIIIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 TSKDLLSSDHTVVPVDFSDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEPDI IN
Sbjct: 181 PAATVTFMYEPDIRIN 196


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  340 bits (872), Expect = 2e-91
 Identities = 168/196 (85%), Positives = 184/196 (93%), Gaps = 1/196 (0%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+GASY R P+VKIRELKDDY KF L DTD+S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLR KC+TDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD-SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWS 576
           +SKDLYSSD +V+PVDFSD +  +S+E RG+IIVKLRRGQELRL+AIARK IGKDHAKWS
Sbjct: 121 SSKDLYSSDPSVVPVDFSDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 577 PAATVTFMYEPDIHIN 624
           PAATVTFMYEP+IH+N
Sbjct: 181 PAATVTFMYEPEIHLN 196


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  336 bits (861), Expect = 3e-90
 Identities = 162/197 (82%), Positives = 184/197 (93%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQRFPK+K+RE+KDD+ KF L DTD+S+ANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFI+HRLGL+PLTSERAMSMRFSRDCDACDGDGQCEYCSVEF+LR KC++DQTLDV
Sbjct: 61  VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD--SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           TSKDL SSDHTV+PVD+SD  S +++   +GIIIVKLRRGQELRL+AIARK IGKDHAKW
Sbjct: 121 TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEP+I+IN
Sbjct: 181 SPAATVTFMYEPEIYIN 197


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 319

 Score =  336 bits (861), Expect = 3e-90
 Identities = 168/194 (86%), Positives = 179/194 (92%), Gaps = 1/194 (0%)
 Frame = +1

Query: 46  GASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 225
           G SY R P+VKIRELKDDY KF L DTD+S+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4   GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 226 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTS 405
           NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLR KC+TDQTLDVTS
Sbjct: 64  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 406 KDLYSSDHTVIPVDFSD-SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWSPA 582
           KDLYSSD TV PVDFSD S  +S+  RGIIIVKLRRGQEL+L+AIARK IGKDHAKWSPA
Sbjct: 124 KDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183

Query: 583 ATVTFMYEPDIHIN 624
           ATVTFMYEP+IHIN
Sbjct: 184 ATVTFMYEPEIHIN 197


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum tuberosum]
          Length = 319

 Score =  335 bits (858), Expect = 8e-90
 Identities = 162/197 (82%), Positives = 184/197 (93%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+G SYQRFPK+KIRE+KDD+ KF L +TD+S+ANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFI+HRLGL+PLTSERAMSMRFSRDCDACDGDGQCEYCSVEF+LR KC++DQTLDV
Sbjct: 61  VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFSD--SGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           TSKDL SSDHTV+PVD+SD  S +++   +GIIIVKLRRGQELRL+AIARK IGKDHAKW
Sbjct: 121 TSKDLLSSDHTVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEP+I+IN
Sbjct: 181 SPAATVTFMYEPEIYIN 197


>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
           gi|482566867|gb|EOA31056.1| hypothetical protein
           CARUB_v10014208mg [Capsella rubella]
          Length = 319

 Score =  333 bits (854), Expect = 2e-89
 Identities = 167/197 (84%), Positives = 181/197 (91%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           MDGA+YQRFPKVKIRELKDDY KF L +TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEF L +KC+TDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFS--DSGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           TS+DLYS+D TV PVDF+   S  +S+E +GIIIVKLRRGQELRL+AIARK IGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSSEHKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEPDI IN
Sbjct: 181 SPAATVTFMYEPDIIIN 197


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
           gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
           [Medicago truncatula] gi|355508950|gb|AES90092.1|
           DNA-directed RNA polymerase II subunit RPB3-A [Medicago
           truncatula]
          Length = 318

 Score =  333 bits (854), Expect = 2e-89
 Identities = 169/197 (85%), Positives = 180/197 (91%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           M+GASY R P+VKIRELKDDY KF L DTD+S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEYCSVEFHLR KCITDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDF--SDSGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           +SKDL SSDHTV PVD    D+  ES + RGIIIVKLRRGQELRL+AIARK IGKDHAKW
Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASIES-DGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEPDIHIN
Sbjct: 180 SPAATVTFMYEPDIHIN 196


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
           gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 319

 Score =  332 bits (852), Expect = 4e-89
 Identities = 166/197 (84%), Positives = 181/197 (91%), Gaps = 2/197 (1%)
 Frame = +1

Query: 40  MDGASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSS 219
           MDGA+YQRFPK+ IRELKDDY KF L +TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 220 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 399
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEF L AKC+TDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDV 120

Query: 400 TSKDLYSSDHTVIPVDFS--DSGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKW 573
           TS+DLYS+D TV PVDF+   S  +S+EQ+GIIIVKLRRGQEL+L+AIARK IGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 574 SPAATVTFMYEPDIHIN 624
           SPAATVTFMYEPDI IN
Sbjct: 181 SPAATVTFMYEPDIIIN 197


>gb|ESQ51010.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
          Length = 369

 Score =  332 bits (850), Expect = 6e-89
 Identities = 164/195 (84%), Positives = 182/195 (93%), Gaps = 2/195 (1%)
 Frame = +1

Query: 46  GASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 225
           GASYQRFPKVKIRELKDDY KF L +TD SMANALRRVMI+EVPT+AIDLVEI++NSSVL
Sbjct: 53  GASYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIDINSSVL 112

Query: 226 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTS 405
           NDEFIAHRLGLIPLTSERAMSMR SRDCD+CDGDGQCE+CSVEF L+AKC+TDQTLDVTS
Sbjct: 113 NDEFIAHRLGLIPLTSERAMSMRLSRDCDSCDGDGQCEFCSVEFRLQAKCVTDQTLDVTS 172

Query: 406 KDLYSSDHTVIPVDFS--DSGYESNEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWSP 579
           +DLYS+D TV PVDF+   SG +S+EQRGIIIVKLRRGQEL+L+AIARK IGKDHAKWSP
Sbjct: 173 RDLYSTDPTVTPVDFTLDSSGTDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 232

Query: 580 AATVTFMYEPDIHIN 624
           A+TVTFMYEPDI+IN
Sbjct: 233 ASTVTFMYEPDININ 247


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 320

 Score =  331 bits (849), Expect = 8e-89
 Identities = 168/195 (86%), Positives = 179/195 (91%), Gaps = 2/195 (1%)
 Frame = +1

Query: 46  GASYQRFPKVKIRELKDDYCKFVLYDTDSSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 225
           G SY R P+VKIRELKDDY KF L DTD+S+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4   GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 226 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTS 405
           NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLR KC+TDQTLDVTS
Sbjct: 64  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 406 KDLYSSDHTVIPVDFSD-SGYES-NEQRGIIIVKLRRGQELRLKAIARKWIGKDHAKWSP 579
           KDLYSSD TV PVDFSD S  +S +  RGIIIVKLRRGQEL+L+AIARK IGKDHAKWSP
Sbjct: 124 KDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183

Query: 580 AATVTFMYEPDIHIN 624
           AATVTFMYEP+IHIN
Sbjct: 184 AATVTFMYEPEIHIN 198