BLASTX nr result

ID: Jatropha_contig00012675 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jatropha_contig00012675
         (357 letters)

Database: NCBI-nr (updated 2014/02/11) 
           35,149,712 sequences; 12,374,887,350 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002335728.1| predicted protein [Populus trichocarpa]            95   8e-18
gb|AAA84682.1| unknown protein (chloroplast) [Nicotiana tabacum]...    71   1e-10

>ref|XP_002335728.1| predicted protein [Populus trichocarpa]
          Length = 79

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 54/83 (65%), Positives = 60/83 (72%)
 Frame = +2

Query: 23  MKVDYLSIHCKTSMIPSRTKHESFDSFGSHAPFFFSITYGKIPISFLTEMNLSSLLYS*F 202
           MKVDYLSIHCKTSMIPSRTKHESFDSFGSHA     +  G   + F  + N   +L+S F
Sbjct: 1   MKVDYLSIHCKTSMIPSRTKHESFDSFGSHAQ-LVQLLMGNSHLFF--DWN-EPILFSRF 56

Query: 203 IFQKKILKLITNPRPEYSEDSSD 271
           I +    KLITNPRPEYSEDSSD
Sbjct: 57  IIRIPKPKLITNPRPEYSEDSSD 79


>gb|AAA84682.1| unknown protein (chloroplast) [Nicotiana tabacum]
           gi|224352|prf||1102209F ORF 6
          Length = 79

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 46/87 (52%), Positives = 53/87 (60%)
 Frame = +2

Query: 23  MKVDYLSIHCKTSMIPSRTKHESFDSFGSHAPFFFSITYGKIPISFLTEMNLSSLLYS*F 202
           MKVDY SI  + S+IPSRTKHESFDSFGSHA      ++      F  E N   +  S F
Sbjct: 1   MKVDYFSIPFQNSIIPSRTKHESFDSFGSHAQLLKVNSH-----IFFYECN-EPIFSSLF 54

Query: 203 IFQKKILKLITNPRPEYSEDSSDQTSN 283
           IFQK I    TN  P+YSEDSSD+  N
Sbjct: 55  IFQKDI---ETNVIPKYSEDSSDKIKN 78


Top